CsGy2G008760.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G008760.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCysteine and histidine-rich domain-containing protein
LocationChr2 : 7867492 .. 7871190 (-)
Sequence length2137
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAGGGCCCTCTTGTCCCTTGCCCTTAGGTTGCTCTCTTTTGTTATATGAATATACATGTTTCTTATCCAAAAAAACAAAAAAAATAACGTGTCCTCGACGTGTCGTGCTCTACAGCTTCAAAATTGGTGCGTGTCATATCTCGTGTCCTGTGCCCGTGCTCATACTTCTTAGACCATTGGTGGTTTCCAAGATGAATTTTGACTATGTTGGGATAAAAGTCACTGGAGGTGCAAACCTGACTTGGCCAAGTCAATCATTGGTGGCCCCTTTACTTCATGAACTTCTACAATTGCCTAATGTCAACTATGACAAAGATTGAAATATTCATGGATATATCGATATATCCATCAATGTATCCTTAAGTCGGAAGGTTCTACATCGATTAGGATTAATTGATATCTCCGATATCTTTTATAAATACACAAAACTCAAAAAAGATTCATCTATTTAATTCCAATATGAATATGAATGCTAATAACAAGATGCATTATGTAGTTTGAAAGCAAAGACAACTTAATTAGTGATTCATATAACTTTATTACTTTTTTTATTACGAGAAATATTTGTTGATAATGATATCGATGTATCCATCTGTAATCCTATGATGACTGCACATTGAGAAAGAATGATTAATTTCCTTATTACTCAATGCTGTGAGATTTCAGCTACAACCTCCAGGGATCCAAAAGTTGGTCAACCATATTGCATACATTTTCCATTTGAGGTTTCTGAAATTGAGCAATCGTAGGCTTTGGGGTGGGCAATTAACTCTGTTGCTCTCCTGTTGCAAATTGTGCTTGAAATACCCTTTTCTTCCTACCAAGCTCATGTTGGTAGTACTTGATGTTGTGTATATGATTGTACTCTTAGTTCAACTAAAAACAAGGGTTTCCCTTGTAATTAGTCTTATGATTATTAACGGTTGGAGGGCTCTTCTTGTTTAGCTGGGAGGGGTTCCCTCTACCCTGCTCTTAGGCTGTTCTTTTGGCTCTACTGGTGAATATTTAACCTTTGTTGCTTATAAAAAAATAATAAAAAACAATTATTTAGTAATAACATGTTTCTTTCCTCAACAAGTTATGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAGTAAGTTCACATCGACCTATTGGCTCTCAAGAATATCTTAGTTTGTTTTCATACAAGGATTATGTTTTTCTTTAAATATATATTTGAGAGAAGGTAAGTTGAAATATCTTTTGCAGCCTATATTTCATGATGGGATGAAAGAATGGAGCTGTTGCAAGAAAAGAAGCCACGACTTCAGCTTATTTTTAGAGATTCCAGGGTCAGATCTTTTTCATTCTTGTATTTTTAATTGGAATGCTACACTGTTTCCATGCATAATTGATATGAACTGATGTTTGTTGATTCCATTCCGACACTTTCCTAGAATATACATATTACTTTTGTACAAATAGTAGTTTTTTTCAGGGCAATTCTAAATATGAACCAAGTATTGGTATCCAGACACTCAAGACTATTTACTCTTATGTTTTAGATGCATCAATTTTGCTACGGATCGTATAATCATTTTTGTACTCAATTTCCGGCTTTGGGTCCTGTCATACCCTGATGTGCAACAGATTCACGTACTTCTTCATTACCCATCATATTCTGAAAGATGGGTGGGTGTGACTTTTTTGTGCTGTCACTTTGCTCCTCGATAATGTTTTTGCCTAAGAATTATTTGATCCTACTACATTTGGCTTCTAAGAAAACTAGTAGGATATTAAATTCTTGGGTAACTTAAACTTGTTCCATCAAAACTATTTGCATTGGCTCGTGTTGACTGTTAAGCCACACACAATGGTTTAATGACATGAATTATTCCCTGTTTATATGGTTTTTCATTTGGACTCTGGAAGGTTTGTGTTGTTTTCATAATGCTTTTTTGTGACAAGTATGACATGTTCTTCCGCATAGAATACATTCTTGTTTTTCTGATTTTCATTTCTGTAAATCTATCTACAATTTATACAAGTGAGAATACCTTTCATGTTTAAGACTTAGATGGATGATATTAAAAGCTAAGGTTGGTCTTCGAAAGCCTTTTAAGTTGAATCAAAGTTGTAGTTTTTGTTGACTTTTTTTAATAAAGATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGGTAAGCGCATCTTTTTACTTTTTTTCAATTTGTATCTTGGAGTACCGTACCTGGATTTTATGCTATATCTGCAGATGAGTTTGGTATCCTTATTTGGCAATTCTCCTGAATGTTAACATTGCAATTTAATCCAAGTTTGAATCTTAGGTACACAAATTAAAGGCAATAACAAATCTATTAATGAAACCTCAACTATACCTGGTGCAAGCAATACCGATACTCAGGCCCCTCAAAAAAAAAAAAAATTGGTATGAATGAACCTCAGATCTGCAAGAATAAGGGTTGTGGTAAAACTTTCACAGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGGTGAGATCATTTATTTACTAAACTTAAAATACACCTTTTTTTGTCGTCATGGCATTTGATTATAGATTATCAACTACTGATATTGATACTTTTTATGTTTGATTTAAAGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGGTATTTAGGTTCTTGTATTTTAGAAGGATGTGCTAACCCTTTGGAATTCTGTTTCAGTTAATTTTTTCTTATTCGATGAAATCCCTCAATCTAGACAAATTTATATATTGCATATTTCTCCACTCCATCTTCCTTCCAGAATTGATTGAACTACCAGAAGCTTTGCAAAGACAATCTATTTACTTCCGAGATAAATATCATAATAGTTTATATGGTACAGAGTTTACCATGAACTTTTATTGGACTTGTTTTGTAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCATATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTGTCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATGGACATGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTATATGTATTCATTTCATCTAATCACACAATATAGTTGTAAATTTTATACTCTTAAATGCAACTTTTATATTATCAAAATGAAGAAAAGCATATTTTGGAGTGATTTTGAGAAGTAA

mRNA sequence

GGGAGGGCCCTCTTGTCCCTTGCCCTTAGGTTGCTCTCTTTTGTTATATGAATATACATGTTTCTTATCCAAAAAAACAAAAAAAATAACGTGTCCTCGACGTGTCGTGCTCTACAGCTTCAAAATTGGTGCGTGTCATATCTCGTGTCCTGTGCCCGTGCTCATACTTCTTAGACCATTGGTGGTTTCCAAGATGAATTTTGACTATGTTGGGATAAAAGTCACTGGAGGTGCAAACCTGACTTGGCCAAGTCAATCATTGGTGGCCCCTTTACTTCATGAACTTCTACAATTGCCTAATGTCAACTATGACAAAGATTGAAATATTCATGGATATATCGATATATCCATCAATGTATCCTTAAGTCGGAAGGTTCTACATCGATTAGGATTAATTGATATCTCCGATATCTTTTATAAATACACAAAACTCAAAAAAGATTCATCTATTTAATTCCAATATGAATATGAATGCTAATAACAAGATGCATTATGTAGTTTGAAAGCAAAGACAACTTAATTAGTGATTCATATAACTTTATTACTTTTTTTATTACGAGAAATATTTGTTGATAATGATATCGATGTATCCATCTGTAATCCTATGATGACTGCACATTGAGAAAGAATGATTAATTTCCTTATTACTCAATGCTGTGAGATTTCAGCTACAACCTCCAGGGATCCAAAAGTTGGTCAACCATATTGCATACATTTTCCATTTGAGGTTTCTGAAATTGAGCAATCGTAGGCTTTGGGGTGGGCAATTAACTCTGTTGCTCTCCTGTTGCAAATTGTGCTTGAAATACCCTTTTCTTCCTACCAAGCTCATGTTGGTAGTACTTGATGTTGTGTATATGATTGTACTCTTAGTTCAACTAAAAACAAGGGTTTCCCTTGTAATTAGTCTTATGATTATTAACGGTTGGAGGGCTCTTCTTGTTTAGCTGGGAGGGGTTCCCTCTACCCTGCTCTTAGGCTGTTCTTTTGGCTCTACTGGTGAATATTTAACCTTTGTTGCTTATAAAAAAATAATAAAAAACAATTATTTAGTAATAACATGTTTCTTTCCTCAACAAGTTATGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAACTAAACAACATAGCCATATAAGAATTGATTGAACTACCAGAAGCTTTGCAAAGACAATCTATTTACTTCCGAGATAAATATCATAATAGTTTATATGGTACAGAGTTTACCATGAACTTTTATTGGACTTGTTTTGTAGTGCAACTTTGTGTTTCTATGAAGATGTTGGAAGGTGGACTGGTTGGTCATATCTGATTCCGACATTCATTTCCTTCTGGCTTATAAATAGGAGAAACAACTTTGGAGATCTCAGTAACTTCATCAGCATATATACTAAATGCATGAAGCTTCATTTCGATGTTTGTATGTTTATGATAAACTATGTTATATATTTTTTGTCCTGCGATATAACATTATTAATATTTTGAAACTGTCCTCGACGTGTTCTTCCGTATAAATGCTCATCTTGTGGTCTCAATGATGGACATGCACCTTATAAATTGAATTCCCCTTCCATCTGATGGCAAACTAGAGCCATATTGTTGCCCCATCAGTTTAATTGAATGGTATATGTATTCATTTCATCTAATCACACAATATAGTTGTAAATTTTATACTCTTAAATGCAACTTTTATATTATCAAAATGAAGAAAAGCATATTTTGGAGTGATTTTGAGAAGTAA

Coding sequence (CDS)

ATGTTTCTTTCCTCAACAAGTTATGTTGTCTTGTTCCTTTGCTGCGTAATGTGTACTTTACTAATTGTCTTTTTCCCTTTACTTGCCATGCGGCCACGGGCTTGGTTGAAATTTGTGGTCTCCATTGTTCCCAGGGAATGCAAGACCGGAAAACATACAACTGAAAAGCCAGTTTTGACCAAGCCAACCACTGGTGTTAAGAAGCCAAGTCCTCCTTCTTCCATGACAAATACATTAGGGAAAGAGTTATGTGCTAGGTGTCAGCAAGGTTTCTTCTGTTCAGACCATGAGATGGAGAATCATGACACTGCCTGCAGTTACCACCCCGGACCTCCTGTTTTTCATGATCGGATGAGAGGGTGGCAATGCTGCAACATTCACGTTAAGGAATTTGACGAGTTCATGGACATTGCTCCCTGCTCTCGTGGTTGGCACAATGCCGGTCCAGCATAA

Protein sequence

MFLSSTSYVVLFLCCVMCTLLIVFFPLLAMRPRAWLKFVVSIVPRECKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHEMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNAGPA
Homology
[Close]
BLAST of CsGy2G008760.1 vs. NCBI nr
Match: XP_004138923.1 (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus] >XP_011649051.1 PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus] >XP_011649052.1 PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 104/156 (66.67%), Postives = 104/156 (66.67%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH---------- 106
           CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH          
Sbjct: 64  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKS 123

Query: 107 ------------------------------------------EMENHDTACSYHPGPPVF 151
                                                     EMENHDTACSYHPGPPVF
Sbjct: 124 INETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVF 183

[Close]
BLAST of CsGy2G008760.1 vs. NCBI nr
Match: XP_011649054.1 (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3 [Cucumis sativus] >KGN61397.1 hypothetical protein Csa_2G110230 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 104/156 (66.67%), Postives = 104/156 (66.67%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH---------- 106
           CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH          
Sbjct: 23  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKS 82

Query: 107 ------------------------------------------EMENHDTACSYHPGPPVF 151
                                                     EMENHDTACSYHPGPPVF
Sbjct: 83  INETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVF 142

[Close]
BLAST of CsGy2G008760.1 vs. NCBI nr
Match: XP_011649053.1 (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 104/156 (66.67%), Postives = 104/156 (66.67%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH---------- 106
           CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH          
Sbjct: 63  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKS 122

Query: 107 ------------------------------------------EMENHDTACSYHPGPPVF 151
                                                     EMENHDTACSYHPGPPVF
Sbjct: 123 INETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVF 182

[Close]
BLAST of CsGy2G008760.1 vs. NCBI nr
Match: XP_008441929.2 (PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1, partial [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-46
Identity = 96/157 (61.15%), Postives = 99/157 (63.06%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPP-SSMTNTLGKELCARCQQGFFCSDH--------- 106
           CKTGKHTTEKPVLTKPTT VKK SPP SSMTNTLGKE CARCQQGFFCSDH         
Sbjct: 76  CKTGKHTTEKPVLTKPTTAVKKLSPPLSSMTNTLGKESCARCQQGFFCSDHGTQIKGTNK 135

Query: 107 -------------------------------------------EMENHDTACSYHPGPPV 151
                                                      EMENH+TACSYHPGPPV
Sbjct: 136 SINETSTIPGASNTDTQAPPQKKRIGINEPQICKNKGCGKTFTEMENHETACSYHPGPPV 195

[Close]
BLAST of CsGy2G008760.1 vs. NCBI nr
Match: XP_023533461.1 (cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.8 bits (473), Expect = 5.3e-44
Identity = 109/232 (46.98%), Postives = 124/232 (53.45%), Query Frame = 0 

Query: 3   LSSTSYVVLFLCCVMCTLLIV-------------------FF--PLLAMRPRAWL----- 62
           LSST+YV+ FLCCV C LLI+                   FF  PL     + W      
Sbjct: 2   LSSTNYVIFFLCCVSCILLILSLSVYMLLGHGLGSYLCFPFFQGPLFHDGMKEWSCCKKR 61

Query: 63  --KFVVSIVPRECKTGKHTTEKPVLTKPTTGVKKPSPP--SSMTNTLGKELCARCQQGFF 122
              F + +    CKTGKHTTEKPVLTKPTT VKKPSP   SSMTNTLGKE CARC+QGFF
Sbjct: 62  SHDFSLFLEIPGCKTGKHTTEKPVLTKPTTSVKKPSPAPVSSMTNTLGKESCARCRQGFF 121

Query: 123 CSDH------------------------------------------------------EM 151
           CSDH                                                      EM
Sbjct: 122 CSDHGSQVQGNNKSINQASNVPPASNIDSQVSPAPAKKTVGINEPQICKNKGCGKTFTEM 181

[Close]
BLAST of CsGy2G008760.1 vs. TAIR10
Match: AT5G51700.1 (protein binding;zinc ion binding)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 67/157 (42.68%), Postives = 83/157 (52.87%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSM-TNTLGKELCARCQQGFFCSDH--------- 106
           CKTGKHTTEKPVL K        +P SS   N   K+ C+RC+QGFFCSDH         
Sbjct: 66  CKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIK 125

Query: 107 --------------------------------------------EMENHDTACSYHPGPP 150
                                                       E +NH+TACS+HPGP 
Sbjct: 126 QTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPA 185

[Close]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match: sp|Q9SE33|RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana OX=3702 GN=RAR1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-31
Identity = 67/157 (42.68%), Postives = 83/157 (52.87%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSM-TNTLGKELCARCQQGFFCSDH--------- 106
           CKTGKHTTEKPVL K        +P SS   N   K+ C+RC+QGFFCSDH         
Sbjct: 66  CKTGKHTTEKPVLAKSVPKHPVAAPTSSPDANAATKDSCSRCRQGFFCSDHGSQPKEQIK 125

Query: 107 --------------------------------------------EMENHDTACSYHPGPP 150
                                                       E +NH+TACS+HPGP 
Sbjct: 126 QTLNTPGQAEEEKIEPLAPPVQKAVIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPA 185

[Close]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match: sp|Q6EPW7|RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAR1 PE=1 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-31
Identity = 65/154 (42.21%), Postives = 79/154 (51.30%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH---------- 106
           CKTGKHTTEKP+     T   K  P  +   ++G + C+RC+QGFFCSDH          
Sbjct: 80  CKTGKHTTEKPITKAVPTKPSKAVPVQTSKQSVGADTCSRCRQGFFCSDHGSQPKAQIPT 139

Query: 107 ----------------------------------------EMENHDTACSYHPGPPVFHD 151
                                                   E +NHD AC YHPGP VF D
Sbjct: 140 ATSDTNMVPVEKPAVPPPKKKIDLNEPRVCKNKGCGKTYKEKDNHDEACDYHPGPAVFRD 199

[Close]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match: sp|A9YUB1|CHRD1_PIG (Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa OX=9823 GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-12
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 100 NHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 148
           N D AC+YHPG PVFHD ++GW CC     +F +F+ IA C++G HN+
Sbjct: 19  NSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRHNS 66

[Close]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match: sp|Q7T3F7|CHRD1_DANRE (Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio OX=7955 GN=chordc1 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.2e-12
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 99  ENHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHN 147
           +N D AC+YHPG PVFHD ++GW CC     +F +F+ IA C++G HN
Sbjct: 18  KNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGPHN 65

[Close]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match: sp|Q29RL2|CHRD1_BOVIN (Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus OX=9913 GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-11
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0 

Query: 100 NHDTACSYHPGPPVFHDRMRGWQCCNIHVKEFDEFMDIAPCSRGWHNA 148
           N D AC+YHPG PVFHD ++GW CC     +F +F+ I  C++G HN+
Sbjct: 19  NSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNS 66

[Close]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match: tr|A0A0A0LKX0|A0A0A0LKX0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G110230 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 104/156 (66.67%), Postives = 104/156 (66.67%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH---------- 106
           CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDH          
Sbjct: 23  CKTGKHTTEKPVLTKPTTGVKKPSPPSSMTNTLGKELCARCQQGFFCSDHGTQIKGNNKS 82

Query: 107 ------------------------------------------EMENHDTACSYHPGPPVF 151
                                                     EMENHDTACSYHPGPPVF
Sbjct: 83  INETSTIPGASNTDTQAPQKKKKIGMNEPQICKNKGCGKTFTEMENHDTACSYHPGPPVF 142

[Close]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match: tr|A0A1S3B5A5|A0A1S3B5A5_CUCME (LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1 OS=Cucumis melo OX=3656 GN=LOC103485924 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-46
Identity = 96/157 (61.15%), Postives = 99/157 (63.06%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPP-SSMTNTLGKELCARCQQGFFCSDH--------- 106
           CKTGKHTTEKPVLTKPTT VKK SPP SSMTNTLGKE CARCQQGFFCSDH         
Sbjct: 76  CKTGKHTTEKPVLTKPTTAVKKLSPPLSSMTNTLGKESCARCQQGFFCSDHGTQIKGTNK 135

Query: 107 -------------------------------------------EMENHDTACSYHPGPPV 151
                                                      EMENH+TACSYHPGPPV
Sbjct: 136 SINETSTIPGASNTDTQAPPQKKRIGINEPQICKNKGCGKTFTEMENHETACSYHPGPPV 195

[Close]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match: tr|A0A2C9VR41|A0A2C9VR41_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149000 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/152 (50.66%), Postives = 87/152 (57.24%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPP---SSMTNTLGKELCARCQQGFFCSDH------- 106
           CKTGKHTTEKPVL K T   KKP PP   ++ TN   KE C RC+QGFFCSDH       
Sbjct: 64  CKTGKHTTEKPVLAKVTASPKKPIPPPTAATTTNLSSKESCPRCKQGFFCSDHGSQAKQA 123

Query: 107 --------------------------------------EMENHDTACSYHPGPPVFHDRM 151
                                                 E +NH+TACSYHPGP +FHDR+
Sbjct: 124 PLARSNVGTQGSSAPPKKVIDINEPQTCRNQGCGKTFKEKDNHETACSYHPGPAIFHDRL 183

[Close]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match: tr|A0A2C9VQY1|A0A2C9VQY1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149000 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 77/152 (50.66%), Postives = 87/152 (57.24%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTKPTTGVKKPSPP---SSMTNTLGKELCARCQQGFFCSDH------- 106
           CKTGKHTTEKPVL K T   KKP PP   ++ TN   KE C RC+QGFFCSDH       
Sbjct: 63  CKTGKHTTEKPVLAKVTASPKKPIPPPTAATTTNLSSKESCPRCKQGFFCSDHGSQAKQA 122

Query: 107 --------------------------------------EMENHDTACSYHPGPPVFHDRM 151
                                                 E +NH+TACSYHPGP +FHDR+
Sbjct: 123 PLARSNVGTQGSSAPPKKVIDINEPQTCRNQGCGKTFKEKDNHETACSYHPGPAIFHDRL 182

[Close]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match: tr|B9ICX8|B9ICX8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G132300v3 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 77/140 (55.00%), Postives = 89/140 (63.57%), Query Frame = 0 

Query: 47  CKTGKHTTEKPVLTK--PTTGVKKP-SPPSS--MTNTLGKELCARCQQGFFCSDH----- 106
           CKTGKHTTEKPVL K  PT   K P SPP++   TN+  KE C RC+QGFFCSDH     
Sbjct: 64  CKTGKHTTEKPVLAKATPTPTPKNPFSPPTAAPATNSSSKESCPRCKQGFFCSDHAKSCA 123

Query: 107 --------------------------EMENHDTACSYHPGPPVFHDRMRGWQCCNIHVKE 151
                                     E +NH+TAC+YHPGP VFHDRMRGW+CC+IHVKE
Sbjct: 124 SAPAKKVVDINQPQTCKNQGCGQTFKEKDNHETACNYHPGPAVFHDRMRGWKCCDIHVKE 183

The following BLAST results are available for this feature:
BLAST of CsGy2G008760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138923.11.8e-5266.67PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1... [more]
XP_011649054.11.8e-5266.67PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X3... [more]
XP_011649053.11.8e-5266.67PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X2... [more]
XP_008441929.27.5e-4661.15PREDICTED: LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing pr... [more]
XP_023533461.15.3e-4446.98cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Cucurbita... [more]
BLAST of CsGy2G008760.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G51700.11.2e-3242.68protein binding;zinc ion binding[more]
BLAST of CsGy2G008760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SE33|RAR1_ARATH2.1e-3142.68Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thalia... [more]
sp|Q6EPW7|RAR1_ORYSJ2.7e-3142.21Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp... [more]
sp|A9YUB1|CHRD1_PIG6.3e-1252.08Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa OX=9823 GN... [more]
sp|Q7T3F7|CHRD1_DANRE8.2e-1252.08Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio OX=7955 G... [more]
sp|Q29RL2|CHRD1_BOVIN1.8e-1150.00Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus OX=9913 GN... [more]
BLAST of CsGy2G008760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKX0|A0A0A0LKX0_CUCSA1.2e-5266.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G110230 PE=4 SV=1[more]
tr|A0A1S3B5A5|A0A1S3B5A5_CUCME4.9e-4661.15LOW QUALITY PROTEIN: cysteine and histidine-rich domain-containing protein RAR1 ... [more]
tr|A0A2C9VR41|A0A2C9VR41_MANES6.1e-3650.66Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149000 PE=4 SV=... [more]
tr|A0A2C9VQY1|A0A2C9VQY1_MANES6.1e-3650.66Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G149000 PE=4 SV=... [more]
tr|B9ICX8|B9ICX8_POPTR3.0e-3555.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_015G132300v3 PE=... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007051CHORD_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098542 defense response to other organism
cellular_component GO:0044424 intracellular part
molecular_function GO:0005515 protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G008760CsGy2G008760gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G008760.1CsGy2G008760.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G008760.1.five_prime_UTR.1CsGy2G008760.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G008760.1.exon.5CsGy2G008760.1.exon.5exon
CsGy2G008760.1.exon.4CsGy2G008760.1.exon.4exon
CsGy2G008760.1.exon.3CsGy2G008760.1.exon.3exon
CsGy2G008760.1.exon.2CsGy2G008760.1.exon.2exon
CsGy2G008760.1.exon.1CsGy2G008760.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G008760.1.CDS.4CsGy2G008760.1.CDS.4CDS
CsGy2G008760.1.CDS.3CsGy2G008760.1.CDS.3CDS
CsGy2G008760.1.CDS.2CsGy2G008760.1.CDS.2CDS
CsGy2G008760.1.CDS.1CsGy2G008760.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G008760.1.three_prime_UTR.2CsGy2G008760.1.three_prime_UTR.2three_prime_UTR
CsGy2G008760.1.three_prime_UTR.1CsGy2G008760.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007051CHORD domainPFAMPF04968CHORDcoord: 96..145
e-value: 1.8E-17
score: 63.6
IPR007051CHORD domainPROSITEPS51401CHORDcoord: 84..145
score: 23.265