CsGy2G002800.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy2G002800.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionSigma factor binding protein 1, chloroplastic
LocationChr2 : 1860227 .. 1862968 (-)
Sequence length417
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGGTGAAATGGAATTAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATATGGTGATGGAGACGGAGAGGAAAAGTTTGTGGATGATGAGTGACATCATGACTTTTTTAGCTATAAAATATAATTTTTGTGAGACTTTGTATTTAGTATGTGAAAGGTTATATATGAATATATAGATTTGAATTTTCTTTTGATTATTATAGAACACACATGTATGAGAATATTAGTTAAAAACAAAAAAAATGAAATGATTCCGAACATAACTTAACCTAAGTATATATTATATGCTCAACTGAATAAAATATAAATTCTCAATCCAAGAATAAAAAATGAAAGGATTTGATTAATTGGAATATTTTAGTACAGTGGTAGTGTTTATGTTGTGTTAGAACTCAATCTAAATGTTTGAATATTTGACTGGGAAATTATTCTTTGATTAGTGTCCCAATTAATTATAAAACTATTGAATTTAATTCATTAGGATTTCCTCTCAAAAACTATTAATGTATAATAATTCTTATGTAGGCATAAGACATCTCAAGAAAATTAGTACTATTCTAATTTCTTATCTACACTAGAAGAAAATAATTTTATTTTTATAATTTTGAATGGATTGTAAATGAAATTAGGTAAAAATAAATTATTGACGAAAGTGTAGAGATATAATTATTAGTTTAGGATTTTAATTTATTCATTGTGATTTATTTTTTAAATTTATATGATAATGGCCATTTAAATAGGTGAATGATTAATAACCTAGCTATTCACTAACTATAATTATGAATATTCATAATTAATACTTCTGTATTGATTAACAAAAAAAATAATTATTATTAAGATATAATATGCTAACAAACTAACTAATTATAAGTTACAACATATATACATTTTTTTAAAAAAGATGCCATATGAGTCTGTAGGTACTAAAGAGTTATTAGAAATACAAAAACAAGAATACGAATGTAATATAAATATGAAGGTATCAGACCACTAGGATGAACACTTCGGTAGAATCATCATCATTCTCACTTCATTAATAAGTAAAGATAAAGTATATAAAGCCATGAATACAAAAACAAGAGCTAGAGGGAAGTCCGAGAGAAATCCAAAGTCAATATAATTACACAAAAGCACTGATATTAAGAGCTAGAGATCGATTGGACGGTGTAGTTTAAAAATAAAAATGAGATCTGCTTGTCCAAAGTCCCGTAAGAACTTTAATATCTTTCTAAACCTCCGTGAGGAATTTTTCTTGTCCCTTAAAAATTATGCTATTTCTTTCTATCTAATTAGTAGACGAAAAGAGTGGAAGCCACCATGTTTGAAGTTTTTTCCAAGTAGTTATTTCTCCTTTTTAGCAGCAGTTCACAGATGCAAATTCTCAAGATCAACTTATTTTCTTGCTCTACTTAATTAGCATTTTTAAGCTGCGTCGGAACCAATCGTCTCTTCAATGACATCTAAGAAGATAATTTTAGCATTACATTTTAATTTGAAACAACATTATTATCAATCTTTGCTTTGTTGTGGTCCTCTAAATTTAATCTCTTTGTTGATTATTCTTTCTTTTATATCGTGCTATATTGGTAGACTTTCCTATATATACACTACAAATTGAAACCTAATTTGACAAGTACTACATTAACTTTTAAATAACCAAATGGTCAAAACATTTTCTAGGAAGTTTTTGATTAATTATACATCAATTACTTTTTTCTTTTTGGACAATATAAATTAAACAGAAAGTCATATATGATTAAAAGATTACATCTCACGAAACAAACCTAAAAAATTATTCGAAATAAGGAGTAGGAAAGAAAGATTACATCTCATGAAGTAATCACAATGTTGTTTTTCTTTCCCTCTTTGGAATGAAGACAAGATTTTAGTGGAAGTTGTTTTGAATCTAACCAAGACATAACACCAACAAACCAACAAAATTGCATTCCCCTGTTTAGGTCTCATAAACAATGTATAGTTTATTACTATTAATGGTCTAAATTATTGATCAATAAGACTTAATTATTATTATTTGGGAGATAGATTATTAGACAGTCAAACAAGTGAGAGATAAAAAGATTATTATTGTTGTTATTATAATCCACAATTATTATTATAGCAAAGCTGGTAAACTTTGTCTTTGGTCCATTAAGCTAAAATTATAAAACAATTAATCAAGAGATTATTGTGGCTTTTAATGGACATTGACTAAACCATGCAGAATTTGTGGACAAATTTTGGTAAAGAATGTGGATTTTCCACATTCAATACCAATCATATCATATAGATGCAAACTAAACTTTTTGACTCAGCTAACTACAAAAGTGTTTCTTCTTTCAATATTATTTTAGGGTTTTAGGGTTTACTGATTGCTGA

mRNA sequence

ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGAACACACATGTCTCATAAACAATCAAAGCTGGGTTTTAGGGTTTACTGATTGCTGA

Coding sequence (CDS)

ATGGAGAATTTCACAACCCTTCCTTCTAATTTTCATCATAAAAAAGTTAGCCAAGTTTCCAACAAAGCAACAATTGATCATCAAAACAAGCCCATCAAAGTGAAGTACATTTCTAGTCCCATGATGGTTAAAGCCAATAACGAGTCAGAATTTCGAGCCATAGTTCAAAAACTCACTGGCCAGCACTCTCCTGATCATGATGATCAATCAGTTCAAGATTTTAACCATGTTTTTTATCCACCCCCACCCTCCTCCTCCCCCGGGGTTTCTTTCGATCCTAAGGATTGTTATGGTAATTCGGCCTCTGGTGATGTACTCTTCGACCGGATTGAGGACGGTGATGAAGGGCGGTACTGGCGAGAACACACATGTCTCATAAACAATCAAAGCTGGGTTTTAGGGTTTACTGATTGCTGA

Protein sequence

MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWREHTCLINNQSWVLGFTDC
Homology
[Close]
BLAST of CsGy2G002800.1 vs. NCBI nr
Match: KGN60780.1 (hypothetical protein Csa_2G010160 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 2.8e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120
           QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR
Sbjct: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120

[Close]
BLAST of CsGy2G002800.1 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 1  MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
          MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTG
Sbjct: 1  MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTG 60

Query: 61 QHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCY 98
          QHS D   D+S Q+FNH F PP   SS   SFD KDCY
Sbjct: 61 QHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY 93

[Close]
BLAST of CsGy2G002800.1 vs. NCBI nr
Match: XP_022142960.1 (sigma factor binding protein 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 30 KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQS-----VQDFNHVFYPPPPS 89
          KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS
Sbjct: 3  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62

Query: 90 SSPGVSFDPKDCYG 99
          ++  VS DPK  YG
Sbjct: 63 TA--VSTDPKGYYG 74

[Close]
BLAST of CsGy2G002800.1 vs. NCBI nr
Match: POE52835.1 (hypothetical protein CFP56_61415 [Quercus suber])

HSP 1 Score: 63.2 bits (152), Expect = 8.2e-07
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 13 HKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDD 69
          H++  + +   T   + +P+K+KYISSPM+VKA N SEFRAIVQ+LTGQHS D  D
Sbjct: 13 HEQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTGQHSEDRSD 68

[Close]
BLAST of CsGy2G002800.1 vs. NCBI nr
Match: XP_011468362.1 (PREDICTED: uncharacterized protein LOC105352572 [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 46/121 (38.02%), Postives = 62/121 (51.24%), Query Frame = 0 

Query: 12  HHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS----PDHD 71
           +H+   Q + +        PI++KYISSPMMV+ANN SEFRAIVQ+LTGQ+S    PDH 
Sbjct: 6   NHENRQQRTERRKRSKAETPIRIKYISSPMMVQANNASEFRAIVQELTGQNSDATIPDHG 65

Query: 72  DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDG-------DEGRYWR 122
               +  N V        S   +  P D    + +GD L    +D        DE ++WR
Sbjct: 66  TDYCEQANWV--------SSHRASQPADM--KTQNGDELMKFSDDHVVAFGQFDEIKFWR 116

[Close]
BLAST of CsGy2G002800.1 vs. TAIR10
Match: AT3G56710.1 (sigma factor binding protein 1)

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 42/118 (35.59%), Postives = 57/118 (48.31%), Query Frame = 0 

Query: 14  KKVSQVSNK-----ATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDD 73
           KK S VS K           NKPIKV+YIS+PM V+    S+FR +VQ+LTGQ + D   
Sbjct: 17  KKPSPVSRKXXXXXXXXTSTNKPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQP 76

Query: 74  Q---SVQDFNHVFYPPPPSSSPGVSFD------PKDCYGNSASGDV-LFDRIEDGDEG 117
           +   S    +H   PP  + +P V           DCY    + D+ L D++  G  G
Sbjct: 77  EPIYSPSSDDHNLSPPAENLAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSG 133

[Close]
BLAST of CsGy2G002800.1 vs. TrEMBL
Match: tr|A0A0A0LFF9|A0A0A0LFF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60
           MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG
Sbjct: 1   MENFTTLPSNFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTG 60

Query: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120
           QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR
Sbjct: 61  QHSPDHDDQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWR 120

[Close]
BLAST of CsGy2G002800.1 vs. TrEMBL
Match: tr|A0A2P4H9C4|A0A2P4H9C4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_61415 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 13 HKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDD 69
          H++  + +   T   + +P+K+KYISSPM+VKA N SEFRAIVQ+LTGQHS D  D
Sbjct: 13 HEQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTGQHSEDRSD 68

[Close]
BLAST of CsGy2G002800.1 vs. TrEMBL
Match: tr|A0A059B5P7|A0A059B5P7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04261 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 10 NFHHKKVSQVSNKATIDHQNKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHS 64
          NFH    SQ   K TI  + KP+K++YISSP+MVKA+N SEFRAIVQ+LTG+ S
Sbjct: 5  NFHQIAKSQ---KPTIMARKKPLKIRYISSPVMVKASNASEFRAIVQELTGKDS 55

[Close]
BLAST of CsGy2G002800.1 vs. TrEMBL
Match: tr|A0A2P5YUH6|A0A2P5YUH6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01323 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 31 PIKVKYISSPMMVKANNESEFRAIVQKLTGQHS 64
          PIKVKYISSPMMVKA+N  EFRAIVQ+LTGQHS
Sbjct: 19 PIKVKYISSPMMVKASNAEEFRAIVQELTGQHS 51

[Close]
BLAST of CsGy2G002800.1 vs. TrEMBL
Match: tr|A0A0D2U3H7|A0A0D2U3H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G186400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 31 PIKVKYISSPMMVKANNESEFRAIVQKLTGQHS 64
          P+KVKYISSPMMVKA+N  EFRAIVQ+LTGQHS
Sbjct: 19 PVKVKYISSPMMVKASNAEEFRAIVQELTGQHS 51

The following BLAST results are available for this feature:
BLAST of CsGy2G002800.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60780.12.8e-63100.00hypothetical protein Csa_2G010160 [Cucumis sativus][more]
XP_022938305.11.0e-2063.27sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
XP_022142960.11.4e-1464.86sigma factor binding protein 1, chloroplastic-like [Momordica charantia][more]
POE52835.18.2e-0755.36hypothetical protein CFP56_61415 [Quercus suber][more]
XP_011468362.11.4e-0638.02PREDICTED: uncharacterized protein LOC105352572 [Fragaria vesca subsp. vesca][more]
BLAST of CsGy2G002800.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56710.12.1e-0435.59sigma factor binding protein 1[more]
BLAST of CsGy2G002800.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G002800.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFF9|A0A0A0LFF9_CUCSA1.8e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1[more]
tr|A0A2P4H9C4|A0A2P4H9C4_QUESU5.4e-0755.36Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_61415 PE=4 SV=1[more]
tr|A0A059B5P7|A0A059B5P7_EUCGR3.5e-0661.11Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04261 PE=4 SV... [more]
tr|A0A2P5YUH6|A0A2P5YUH6_GOSBA3.5e-0687.88Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA01323 PE=4 SV... [more]
tr|A0A0D2U3H7|A0A0D2U3H7_GOSRA4.6e-0684.85Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G186400 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0051091positive regulation of sequence-specific DNA binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR039335SIB1/2
IPR008889VQ
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy2G002800CsGy2G002800gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy2G002800.1CsGy2G002800.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G002800.1.CDS.5CsGy2G002800.1.CDS.5CDS
CsGy2G002800.1.CDS.4CsGy2G002800.1.CDS.4CDS
CsGy2G002800.1.CDS.3CsGy2G002800.1.CDS.3CDS
CsGy2G002800.1.CDS.2CsGy2G002800.1.CDS.2CDS
CsGy2G002800.1.CDS.1CsGy2G002800.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy2G002800.1.exon.5CsGy2G002800.1.exon.5exon
CsGy2G002800.1.exon.4CsGy2G002800.1.exon.4exon
CsGy2G002800.1.exon.3CsGy2G002800.1.exon.3exon
CsGy2G002800.1.exon.2CsGy2G002800.1.exon.2exon
CsGy2G002800.1.exon.1CsGy2G002800.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 37..65
e-value: 3.9E-9
score: 35.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..93
NoneNo IPR availablePANTHERPTHR33624:SF2SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 13..69
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624FAMILY NOT NAMEDcoord: 13..69