CsGy1G030280.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G030280.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 28531172 .. 28531447 (-)
Sequence length	204

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGCTCTCCAGTAAAAGGAGGAAGAGAAAATTGGGAACGTTGTTCGATGAGCTGTTCGTATGGAAGTAAATTGCCTTGTCAGGTTGGTTTTGGTGGTTAGAAGGTCTTCTTAAGTTCATCGGGGTTTTATCTGAAGGGATTGATTGGTGGGATAAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATGATATTGTTGTGCTGCTTGGCAAGTTCTGTCTCTGA

mRNA sequence

ATGGCCGAGCTCTCCAGTTGGTTTTGGTGGTTAGAAGGTCTTCTTAAGTTCATCGGGGTTTTATCTGAAGGGATTGATTGGTGGGATAAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATGATATTGTTGTGCTGCTTGGCAAGTTCTGTCTCTGA

Coding sequence (CDS)

ATGGCCGAGCTCTCCAGTTGGTTTTGGTGGTTAGAAGGTCTTCTTAAGTTCATCGGGGTTTTATCTGAAGGGATTGATTGGTGGGATAAGATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGAAGGCAGGTGATGATATTGTTGTGCTGCTTGGCAAGTTCTGTCTCTGA

Protein sequence

MAELSSWFWWLEGLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVVLLGKFCL

Homology

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BLAST of CsGy1G030280.1 vs. NCBI nr
Match: KGN66549.1 (hypothetical protein Csa_1G629060 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 5.0e-26
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MAELSSWFWWLEGLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV 60
          MAELS      +GLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV
Sbjct: 1  MAELS------KGLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV 60

Query: 61 LLGKFCL 68
          LLGKFCL
Sbjct: 61 LLGKFCL 61

[Close]

BLAST of CsGy1G030280.1 vs. TrEMBL
Match: tr|A0A0A0LZW1|A0A0A0LZW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 60/67 (89.55%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MAELSSWFWWLEGLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV 60
          MAELS      +GLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV
Sbjct: 1  MAELS------KGLLKFIGVLSEGIDWWDKMVYSVIYLTVESSCRNCFYYHPKAGDDIVV 60

Query: 61 LLGKFCL 68
          LLGKFCL
Sbjct: 61 LLGKFCL 61

The following BLAST results are available for this feature:

BLAST of CsGy1G030280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66549.1	5.0e-26	89.55	hypothetical protein Csa_1G629060 [Cucumis sativus]	[more]

BLAST of CsGy1G030280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G030280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G030280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LZW1\|A0A0A0LZW1_CUCSA	3.3e-26	89.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G030280	CsGy1G030280	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G030280.1.CDS.2	CsGy1G030280.1.CDS.2	CDS
CsGy1G030280.1.CDS.1	CsGy1G030280.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G030280.1.exon.2	CsGy1G030280.1.exon.2	exon
CsGy1G030280.1.exon.1	CsGy1G030280.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G030280.1	CsGy1G030280.1-protein	polypeptide