CsGy1G020710.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G020710.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 19374702 .. 19375511 (-)
Sequence length405
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGTCAAGAACAAATTCTATAGCTTCATCTTCGAAGCCATGGGAACGAGAGACAAAGGAAACAATCTCGTCAAGAGCTTCCAGTTTGATGCTGTACAACCCTCTGATTTTAGCTTTCCTCTGTACCTTTTTCCTCAAAGTTAATGTGTCCATTCTTCTGTGAGACAATCTGCAATTCTGCACAATAATTGTGAAGGAATGATGATGGGGTTGGAAAATGGAGGGTTGATTCACGACGAAATTCTTTTTTGGCTCTACTAGATACAATTGTAATCAGTCCAACAAGAAAACGCAGTTAAAGGTTTTCAGTTAAAGGAAGAAAAAGAACAAATGAATAGGAAGAAGAAGAAAAGACTACTACGGATCCGAACCTTGTGGCTCCCTGATTTTGAGTGGTCCAAGGGCAAGAGGCCGCTCTTGCAGTAGCTGTTCGTGTTGACTAAGTTCTTGTCCCGCTAGTTCTTGTTCCTGTAGCTCTCAGTTCTTGTTGGAGAAGTACTTGTGTCCTTGCGGGAATGAGAAAGGTCTCTTGACTTGATCAAAGATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

mRNA sequence

ATGGAGATTGTCAAGAACAAATTCTATAGCTTCATCTTCGAAGCCATGGGAACGAGAGACAAAGGAAACAATCTCGTCAAGAGCTTCCAGTTTGATGCTGTACAACCCTCTGATTTTAGCTTTCCTCTGTACCTTTTTCCTCAAAATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Coding sequence (CDS)

ATGGAGATTGTCAAGAACAAATTCTATAGCTTCATCTTCGAAGCCATGGGAACGAGAGACAAAGGAAACAATCTCGTCAAGAGCTTCCAGTTTGATGCTGTACAACCCTCTGATTTTAGCTTTCCTCTGTACCTTTTTCCTCAAAATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Protein sequence

MEIVKNKFYSFIFEAMGTRDKGNNLVKSFQFDAVQPSDFSFPLYLFPQNFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFCSFF
Homology
[Close]
BLAST of CsGy1G020710.1 vs. NCBI nr
Match: KGN65522.1 (hypothetical protein Csa_1G434700 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 48  QNFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR 107
           ++FQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR
Sbjct: 37  KDFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR 96

Query: 108 VSAVGEVAVPVSVAEAQPILLSFCSFF 135
           VSAVGEVAVPVSVAEAQPILLSFCSFF
Sbjct: 97  VSAVGEVAVPVSVAEAQPILLSFCSFF 123

[Close]
BLAST of CsGy1G020710.1 vs. TrEMBL
Match: tr|A0A0A0LXJ3|A0A0A0LXJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 48  QNFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR 107
           ++FQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR
Sbjct: 37  KDFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIR 96

Query: 108 VSAVGEVAVPVSVAEAQPILLSFCSFF 135
           VSAVGEVAVPVSVAEAQPILLSFCSFF
Sbjct: 97  VSAVGEVAVPVSVAEAQPILLSFCSFF 123

The following BLAST results are available for this feature:
BLAST of CsGy1G020710.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65522.11.0e-3897.70hypothetical protein Csa_1G434700 [Cucumis sativus][more]
BLAST of CsGy1G020710.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G020710.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G020710.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXJ3|A0A0A0LXJ3_CUCSA6.8e-3997.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G020710CsGy1G020710gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G020710.1.CDS.2CsGy1G020710.1.CDS.2CDS
CsGy1G020710.1.CDS.1CsGy1G020710.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G020710.1.exon.2CsGy1G020710.1.exon.2exon
CsGy1G020710.1.exon.1CsGy1G020710.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G020710.1CsGy1G020710.1-proteinpolypeptide