CsGy1G019770.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G019770.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUnknown Protein
LocationChr1 : 18636969 .. 18637495 (-)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCACATTTGGCCAGCCTCGCAGCTATTGGTGGCGTATGTGTAATACTTCACTTCGCTAGCCCACGAAGTCACCGCATCCAATGGCCTCCATGCCGATCCACTCCCCCAAAATATGTTCTCTCCCAGCTTGAAATCGTCTTCAGGGAAAGAATGTTGCAGTTTACAATCCCCTTTCCTCTGCCCTGCCCACCACCTTGCGTACTTCTCCAACTGAAAATTCCATGCCAATGGCAGCTCAAACTTGGCCGCTCGAACCAGATTGTGCGCAAATAGAAACTCTATGGACTCGCTAATGCAGCCCCAACACAGTTGCTTCGATACCCTGTAGATGGTTTCGTTGTCCACTTGATTTTGCTTGTTTGTTTGAACTTGCACACCAGGTGTTTGAGAAAAGTTGTGAGAGAGAACTCGGGGCATAAAGACGGTAAGTAGGACTAGAAACACAGGTAGTTGCAGCTGCTTATTCATTATGATTATTGTTGTTGATGCAGAGGCTATGGCTGGTGATTATTGTTGCTTGA

mRNA sequence

ATGGCCGCACATTTGGCCAGCCTCGCAGCTATTGGTGGCGTATGTGTAATACTTCACTTCGCTAGCCCACGAAGTCACCGCATCCAATGGCCTCCATGCCGATCCACTCCCCCAAAATATGTTCTCTCCCAGCTTGAAATCGTCTTCAGGGAAAGAATGTTGCAGTTTACAATCCCCTTTCCTCTGCCCTGCCCACCACCTTGCGTACTTCTCCAACTGAAAATTCCATGCCAATGGCAGCTCAAACTTGGCCGCTCGAACCAGATTAGGCTATGGCTGGTGATTATTGTTGCTTGA

Coding sequence (CDS)

ATGGCCGCACATTTGGCCAGCCTCGCAGCTATTGGTGGCGTATGTGTAATACTTCACTTCGCTAGCCCACGAAGTCACCGCATCCAATGGCCTCCATGCCGATCCACTCCCCCAAAATATGTTCTCTCCCAGCTTGAAATCGTCTTCAGGGAAAGAATGTTGCAGTTTACAATCCCCTTTCCTCTGCCCTGCCCACCACCTTGCGTACTTCTCCAACTGAAAATTCCATGCCAATGGCAGCTCAAACTTGGCCGCTCGAACCAGATTAGGCTATGGCTGGTGATTATTGTTGCTTGA

Protein sequence

MAAHLASLAAIGGVCVILHFASPRSHRIQWPPCRSTPPKYVLSQLEIVFRERMLQFTIPFPLPCPPPCVLLQLKIPCQWQLKLGRSNQIRLWLVIIVA
Homology
[Close]
BLAST of CsGy1G019770.1 vs. NCBI nr
Match: EYU34277.1 (hypothetical protein MIMGU_mgv1a016857mg [Erythranthe guttata])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 1  MAAHLASLAAIGGVCVILHFASPRSHRIQWPPCRSTPPKYVLSQLEIVFRERMLQFTIPX 60
          MA HL   AAI  V +IL    P +  I   P  S  P Y+L++LEIVFRER+ Q  +  
Sbjct: 1  MATHLPINAAITPVRIILLLFRPSTDSIHGGPRGSAAPVYILAELEIVFRERVCQLAVLL 60

Query: 61 XXXXXXXXVLLQLKIPCQWQLKLGRSNQI 90
                  V+ QL+IP +WQL   R +Q+
Sbjct: 61 PLPGPPPGVVSQLRIPHEWQLHFSRPDQV 89

[Close]
BLAST of CsGy1G019770.1 vs. TrEMBL
Match: tr|A0A022R0P3|A0A022R0P3_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016857mg PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.6e-07
Identity = 36/89 (40.45%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 1  MAAHLASLAAIGGVCVILHFASPRSHRIQWPPCRSTPPKYVLSQLEIVFRERMLQFTIPX 60
          MA HL   AAI  V +IL    P +  I   P  S  P Y+L++LEIVFRER+ Q  +  
Sbjct: 1  MATHLPINAAITPVRIILLLFRPSTDSIHGGPRGSAAPVYILAELEIVFRERVCQLAVLL 60

Query: 61 XXXXXXXXVLLQLKIPCQWQLKLGRSNQI 90
                  V+ QL+IP +WQL   R +Q+
Sbjct: 61 PLPGPPPGVVSQLRIPHEWQLHFSRPDQV 89

The following BLAST results are available for this feature:
BLAST of CsGy1G019770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
EYU34277.11.3e-0640.45hypothetical protein MIMGU_mgv1a016857mg [Erythranthe guttata][more]
BLAST of CsGy1G019770.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G019770.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G019770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A022R0P3|A0A022R0P3_ERYGU8.6e-0740.45Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016857mg PE... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G019770CsGy1G019770gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G019770.1.CDS.2CsGy1G019770.1.CDS.2CDS
CsGy1G019770.1.CDS.1CsGy1G019770.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G019770.1.exon.2CsGy1G019770.1.exon.2exon
CsGy1G019770.1.exon.1CsGy1G019770.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G019770.1CsGy1G019770.1-proteinpolypeptide