CsGy1G017200.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTATTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGATGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCAACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGTAGAAGAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGGTACGTAAAACAATTTGGTTTAAGAAATTTAAGAGTTTTATTAGTTCGTAATGCTCTTTAAAGATATTTTAATTTTTCTTACAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGGTAGGTACAAATTAAAACATATTTTTATTTTTGTATATTATCGATCAAACAGTTTCTTCATTTTTTCTTTTATTCCAATTATCTTTTAAAGATTTTAATCTTGTATATATATGAAATTATATTATAATGGTCTTTTATACTATTGATCAAATGTTTTTAACAATGCTCCTAACGAAAGACTTTGCTCTTTCTTATAGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGTAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA ATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTATTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGATGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCAACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGTAGAAGAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGTAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA ATGTTATCTGTCGTAGACATTTATACAAAAGAACCTCCTCAAATATGGCAACAATGTGGAGGGGTTGATGGTCAGGATGTTCATTTCTTCACTTGTCTTAAAAAGAAAAAGTCTCGTATTGTGAGGAAAGTTGGTCCCAATGGAGCCACATGGAGTGGTGAAAGCAAAGCAACCAAAGTGTTTTCTCACAATAATACTTTGGTTGGTGATTTTAAACGGTTTCATTATGAAAATCCTAAAATGAAGAAGGATGGTCATCATAACAATAATTACTCATGGATCATGTATGAGTACACTCTTCACCCTAATCTTGTACCTGAAGGAGTTGTACACGACTCTTTTGTACTGTGTATGCTTCGAAAGAAGATCTTGAAACAAGATAAAAGAGCATTCTCTGCAATAAAACAAACATCATCTTGTCTTGATTGGCCAAACACGACGAAAGCAACAACAACGCAATTGGAAGTACACATTGATGATCTGAATACTAAACGTAGAAGAGTGGAAGAACAAATTTGCATTGATAGGGTTGAAGACGATTGTTTCATCAATATCGAACGATTTGGTGAACAACTTTTGAACGGATACAATTTGGAAGAACCACCCCAACTTCTTCCAGAGAGTCGAGCAATGCAAATGGAACCGTGGTCGAAAGATAACACACTTCGTGAAATATGTCCAACAATGGAGACTGAAGCACCCGAACAAAATTATTTAACTGTAGATGAAGATGCATTATTATTTGCAAGGGAGCTCGAGATGTCACTTGAACAACAATGA MLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTCLKKKKSRIVRKVGPNGATWSGESKATKVFSHNNTLVGDFKRFHYENPKMKKDGHHNNNYSWIMYEYTLHPNLVPEGVVHDSFVLCMLRKKILKQDKRAFSAIKQTSSCLDWPNTTKATTTQLEVHIDDLNTKRRRVEEQICIDRVEDDCFINIERFGEQLLNGYNLEEPPQLLPESRAMQMEPWSKDNTLREICPTMETEAPEQNYLTVDEDALLFARELEMSLEQQ
BLAST of CsGy1G017200.1 vs. NCBI nr
Match: KGN65107.1 (hypothetical protein Csa_1G224380 [Cucumis sativus]) HSP 1 Score: 527.3 bits (1357), Expect = 2.9e-146 Identity = 254/259 (98.07%), Postives = 255/259 (98.46%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. NCBI nr
Match: KGN56256.1 (hypothetical protein Csa_3G110040 [Cucumis sativus]) HSP 1 Score: 303.9 bits (777), Expect = 5.2e-79 Identity = 145/164 (88.41%), Postives = 147/164 (89.63%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. NCBI nr
Match: XP_011660358.1 (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus]) HSP 1 Score: 191.0 bits (484), Expect = 4.9e-45 Identity = 91/180 (50.56%), Postives = 131/180 (72.78%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. NCBI nr
Match: XP_008443570.1 (PREDICTED: NAC domain-containing protein 105-like [Cucumis melo]) HSP 1 Score: 188.7 bits (478), Expect = 2.4e-44 Identity = 110/259 (42.47%), Postives = 153/259 (59.07%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. NCBI nr
Match: XP_022934631.1 (NAC domain-containing protein 12-like [Cucurbita moschata]) HSP 1 Score: 160.6 bits (405), Expect = 7.1e-36 Identity = 78/155 (50.32%), Postives = 106/155 (68.39%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. TrEMBL
Match: tr|A0A0A0LWA5|A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G224380 PE=4 SV=1) HSP 1 Score: 527.3 bits (1357), Expect = 1.9e-146 Identity = 254/259 (98.07%), Postives = 255/259 (98.46%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. TrEMBL
Match: tr|A0A0A0L807|A0A0A0L807_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110040 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 3.4e-79 Identity = 145/164 (88.41%), Postives = 147/164 (89.63%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. TrEMBL
Match: tr|A0A1S3B8F1|A0A1S3B8F1_CUCME (NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44 Identity = 110/259 (42.47%), Postives = 153/259 (59.07%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. TrEMBL
Match: tr|V4S8B0|V4S8B0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013622mg PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17 Identity = 57/127 (44.88%), Postives = 76/127 (59.84%), Query Frame = 0
BLAST of CsGy1G017200.1 vs. TrEMBL
Match: tr|A0A0A0LFJ5|A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 4.1e-16 Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|