CsGy0G000520.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy0G000520.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr0 : 8098414 .. 8099267 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCAAGTGTGAAGCATCATTGAGCTTAGTTATCCTTGGTGTTTACAAGAAATAATTTTGAGAATCCTCCCAAAAGGCCTCAAAATGGAGGACCAAAGAATTTTACCAATTCTTCTCGTTTCATGTTTCCTCTTTCTCTTTCTCTCTCCTGGTATGCTTCTCTCTCTTATTTCTTCTATCATTGGGTTTTTATTATTATATTCGTTACTCTTATCTCTTCTCTGCTCAACATTTCTTTCTCTCAAAGGATTTGGAGTAGAAACGATGAGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGTGATTCTTCAAAATTTTGTTGTCCTTCTACTTTCAATTTCGGTTTATTTTAATTTAAAAACTTTCATTTTGGATAATCGTTTTAAGTTGTATCTCATTCTTTTACCATGTAAGGATCAAAATGAAGGTTTTGAAAGTTGAAAAAACTAAAATGAAAACAGATTATTAAAATTAGTACAAAGATGAAAATGAAGGGGTGAAATTGTGTGTTTTTATATTTGACAGGAAATGAGTGGAGGAAAATGGAGAGACGTGATGGTTGATCAATTACTTGAAGACTATCATGGTCCAGGACCTAATAAACCAAGGTCTATCACTGCTCCTAATTCTGCAACACCTTAATTAATTATCAACATCATATATATAAGACGTGTATATTGTAAAATTCGTATGCATGTACTCTGAAACTACTAGTGTGTAACCTTTTTTCTTTGTCTTTATATTTCAAGTGTGATAATAATCCATGCATGCATGGACCTAAGTAGTATTGGTTTGTAATTTTCAACCCTTCTCTTTTAAATTAGTGTAATCTATATGCAT

mRNA sequence

ATGAATCTCAAGTGTGAAGCATCATTGAGCTTAGTTATCCTTGGATTTGGAGTAGAAACGATGAGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATGAGTGGAGGAAAATGGAGAGACGTGATGGTTGATCAATTACTTGAAGACTATCATGGTCCAGGACCTAATAAACCAAGGTCTATCACTGCTCCTAATTCTGCAACACCTTAATTAATTATCAACATCATATATATAAGACGTGTATATTGTAAAATTCGTATGCATGTACTCTGAAACTACTAGTGTGTAACCTTTTTTCTTTGTCTTTATATTTCAAGTGTGATAATAATCCATGCATGCATGGACCTAAGTAGTATTGGTTTGTAATTTTCAACCCTTCTCTTTTAAATTAGTGTAATCTATATGCAT

Coding sequence (CDS)

ATGAATCTCAAGTGTGAAGCATCATTGAGCTTAGTTATCCTTGGATTTGGAGTAGAAACGATGAGAACTATGGAACAGGCAGCCTCACTTACTCCACATGAAAAGGAAATGAGTGGAGGAAAATGGAGAGACGTGATGGTTGATCAATTACTTGAAGACTATCATGGTCCAGGACCTAATAAACCAAGGTCTATCACTGCTCCTAATTCTGCAACACCTTAA

Protein sequence

MNLKCEASLSLVILGFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP

Homology

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BLAST of CsGy0G000520.1 vs. NCBI nr
Match: KGN52469.1 (hypothetical protein Csa_5G636610 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 15 GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP 74
          GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP
Sbjct: 23 GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP 81

[Close]

BLAST of CsGy0G000520.1 vs. TrEMBL
Match: tr|A0A0A0KU89|A0A0A0KU89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 15 GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP 74
          GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP
Sbjct: 23 GFGVETMRTMEQAASLTPHEKEMSGGKWRDVMVDQLLEDYHGPGPNKPRSITAPNSATP 81

The following BLAST results are available for this feature:

BLAST of CsGy0G000520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52469.1	2.4e-26	100.00	hypothetical protein Csa_5G636610 [Cucumis sativus]	[more]

BLAST of CsGy0G000520.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy0G000520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy0G000520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KU89\|A0A0A0KU89_CUCSA	1.6e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636610 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy0G000520	CsGy0G000520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy0G000520.1	CsGy0G000520.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy0G000520.1.CDS.3	CsGy0G000520.1.CDS.3	CDS
CsGy0G000520.1.CDS.2	CsGy0G000520.1.CDS.2	CDS
CsGy0G000520.1.CDS.1	CsGy0G000520.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy0G000520.1.exon.3	CsGy0G000520.1.exon.3	exon
CsGy0G000520.1.exon.2	CsGy0G000520.1.exon.2	exon
CsGy0G000520.1.exon.1	CsGy0G000520.1.exon.1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy0G000520.1.three_prime_UTR.1	CsGy0G000520.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..73