Cp4.1LG20g08920.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g08920.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG20 : 7015405 .. 7016312 (-)
Sequence length	342

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTAGTTATTCTTGATGAGTGTCCAACATCAACAGCTACCAGAGAATGTTCGTTAGACCAAGAAATTAAGTATACATCCAAGTTGCCTGTTAGGATAGCCACCGTAGGAAAATATGTTATGATAGGTCCCATTCATGAAACTGTATGTGATTGCATGTTACCTTGATAAAGGGTCGCTTATTGAATATTTTAGTCATATGTTACTCTCATTTTTTTTTCAGGTAGAGGCAAGACACCCCTGTACAGCTGACGACGACATCGCAACTCGAGACCATGACACATGCGTAGTTATAGGTTAGTTGGAAAAGAATTGTTGAATGGTTTTTGTATTAAAATGCATAATTGTACGAATACGTATAGGTATGAATGTTCATGGAAATTCAAATGGATTTTACTTTTGTATTAAACTATGTGTGAAACCCTTACTTTTTGGATTAAAAAATTCCTTTTAAGAAAACTTGTAGACTTAGGTTATTGAGTAAACTGAATTAAACTTGTGCCTATAAATCCCCACATCTTTGAGTCCTCTTCTTCCCTTTTCTTCTTCTTCTTCCTCTTCGTCTGCCCGCCATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACGTGATTTGTTCTTGTGTGGAGGAATTGAGTGATGAATTTGGTGTGGAGTGTTCTTAAGCTTTGGTTTTTAAGGATTGATCCTCAAAGCTTTGTTGGTTTTTATGTTTTATGTTGAAGTTGTTGA

mRNA sequence

ATGACGGTAGAGGCAAGACACCCCTGTACAGCTGACGACGACATCGCAACTCGAGACCATGACACATGCGTAGTTATAGTCCTCTTCTTCCCTTTTCTTCTTCTTCTTCCTCTTCGTCTGCCCGCCATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACTTGTTGA

Coding sequence (CDS)

ATGACGGTAGAGGCAAGACACCCCTGTACAGCTGACGACGACATCGCAACTCGAGACCATGACACATGCGTAGTTATAGTCCTCTTCTTCCCTTTTCTTCTTCTTCTTCCTCTTCGTCTGCCCGCCATGGCTGCAGCTCCTTCCACGGGCTTAAAGGCGAACATCTCTAGCCTTCCTCCGAGACGGGGTCGAATCAAGGCTCGTATTTTTGAGAGCCTTGTCAATTCAGTAGCCTTGATACTCTTCAAAGTCATTCGATACCTCGTCAGCGATGCTCGAATCCGCGCTGTTCCGCTGCCTCCTCCTCTTCGTTACGATGGAGGCTCCGTCGTCACTTGTTGA

Protein sequence

MTVEARHPCTADDDIATRDHDTCVVIVLFFPFLLLLPLRLPAMAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVALILFKVIRYLVSDARIRAVPLPPPLRYDGGSVVTC

Homology

[Close]

BLAST of Cp4.1LG20g08920.1 vs. TrEMBL
Match: A0A0A0LS06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 43  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVAL-------ILFKVIRYLVSDARIR 102
           MAAA ST  K  I +LPP+RGRIKA+I ESLVNS AL       IL + IR LV+ AR  
Sbjct: 1   MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 103 AVP-----LPPPLRYDGGS 110
             P      PPPL + G S
Sbjct: 61  DAPPPYPAPPPPLIFHGVS 79

[Close]

BLAST of Cp4.1LG20g08920.1 vs. NCBI nr
Match: gi|700209619|gb|KGN64715.1| (hypothetical protein Csa_1G077160 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-06
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 43  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSVAL-------ILFKVIRYLVSDARIR 102
           MAAA ST  K  I +LPP+RGRIKA+I ESLVNS AL       IL + IR LV+ AR  
Sbjct: 1   MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 103 AVP-----LPPPLRYDGGS 110
             P      PPPL + G S
Sbjct: 61  DAPPPYPAPPPPLIFHGVS 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g08920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g08920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS06_CUCSA	3.5e-06	51.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077160 PE=4 SV=1	[more]

BLAST of Cp4.1LG20g08920.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g08920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209619\|gb\|KGN64715.1\|	5.0e-06	51.90	hypothetical protein Csa_1G077160 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG20g08920	Cp4.1LG20g08920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08920.1:cds:001	Cp4.1LG20g08920.1:cds:001	CDS
Cp4.1LG20g08920.1:cds:002	Cp4.1LG20g08920.1:cds:002	CDS
Cp4.1LG20g08920.1:cds:003	Cp4.1LG20g08920.1:cds:003	CDS
Cp4.1LG20g08920.1:cds:004	Cp4.1LG20g08920.1:cds:004	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g08920.1	Cp4.1LG20g08920.1-protein	polypeptide