Cp4.1LG18g00310.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g00310.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L39
LocationCp4.1LG18 : 547354 .. 548985 (+)
Sequence length640
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTCGCATTTTGAATCGACACGTAGTGGGCCCATTTATTCGATGCCCAAACTCGATGAATACTCATGAACCCTAATTCATTATAATCTTGCTTCTCCTCCTCCTCTTTGCCGTTGATTATCTCCGCTTCTTTATCGGTAAAACTTCAATTTCTTGAAATTCTCATTACTTCATTTATGCAATCTTGTTCTTTGGGATTTTATATCAGCGAAACAACGCTGAAATCCAATATTACGATCATAGGGGTCCACGGATTGTCAGTCGTTATGTTCGATATTGTTCGCCTTACAATTTCTATACGTTTTTGTAACTTGTGTGTGTCATGCCTTTTATTGTCGATTTATAGAATGAATTTGGAATTATTATGCTAGCGAGAAAACAGTTTTTGATTGTTTAGAGATCGAGTTTGTCGGCCATTAATCTGAATATTGTGGAGCTGATGCGCTGTTTGTCATTTGTGTATTATTTGAAGTCTGGAATTATCGGTGTAGGGAGTGAAGTACTATTGATTTAGGATGTATATACTTCCTCACTGCAGTTTTCTTTGTTTTTGTTTTTGTTTTTGTTTTGTTAATTTGAGTGGAACAAATAGAACAGTTCTATGAGTAGAATAAAGTGACTCAATTCGACTGTATGAATCCTTAATTTTGTAAGGTACATACTAGTTCTGAGTTTATTGCTCGATTGGTAATTTCCGATATCTTTCAGTTCTTTTCTTCATAAACAGTGTTTCTGAATCAATGATTTTGGCGTGCAGTTTACAAATTTTAACTATATCATCGTTCATTTGATTATCATCGTTCAGTTTACGAATTTCCCTTTTTCAGTCTGGACTTCAATGTTGAATTATTCATTCTCTTTATGTTTTTTCATTTGGTTTATGTATTGATGGTGGTTCTTCCTTTATCAGGCAATTTGTCGCGGTTGTTGGTCGAATCCAGAATTTCGAAGATGGTAACTATTTCTTCTTTGAAGTGATATTCATGTGTTCCTTCTGATGATGTATTTAATTACATATTCAATTTAGTTTTGTTTTGGGAGATTGTGTTTTATGATGTGAGTTTTCTTTAATGTTTGCAGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTCTTTAGCTCTTTTCTTCCTTTTTTTTCATATTATCTCATTTCTGTTCTTCTCAGTTTTGAATTTAACATCATATGTTGATGTATACTTCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTTTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAACTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGTTAATCTTTAGATTTACTTCACTGTTCAATTTATATCTCCAGTAATTTCAATTATCAAGTTAATTTCAGTGTTGGTGCTTTTTCTTCTTACCTTAGTGTGGAGTTTTATTCTGGTCTGAATTGTTCAATGATTCATGTGGATGATACGAGTTTGGTGTCCT

mRNA sequence

AGCCTCGCATTTTGAATCGACACGTAGTGGGCCCATTTATTCGATGCCCAAACTCGATGAATACTCATGAACCCTAATTCATTATAATCTTGCTTCTCCTCCTCCTCTTTGCCGTTGATTATCTCCGCTTCTTTATCGGCAATTTGTCGCGGTTGTTGGTCGAATCCAGAATTTCGAAGATGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGAGGTGTTTCTCTTGTGATTTGCTCTTCATCCTGTTTGGAATCTTTTTTTAACTGTTATGTTAGTTGTGGAGAAGACAAAGGATATAGAGCTAGAGTTTTGAACTTTTTCCTCTTAATTTAAGAACTTATTGAAGAGAAACTCACGTTAATCTTTAGATTTACTTCACTGTTCAATTTATATCTCCAGTAATTTCAATTATCAAGTTAATTTCAGTGTTGGTGCTTTTTCTTCTTACCTTAGTGTGGAGTTTTATTCTGGTCTGAATTGTTCAATGATTCATGTGGATGATACGAGTTTGGTGTCCT

Coding sequence (CDS)

ATGCCGTCTCACAAGACCTTCATAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATACGGTTGAGGACTGACAACACCATCAGGTACAATGCTAAGCGAAGGCACTGGCGCCGCACGAAGCTCGGATTTTGA

Protein sequence

MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Homology
[Close]
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match: B9SC04_RICCO (Ribosomal protein L39e, putative OS=Ricinus communis GN=RCOM_0701310 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match: A0A061GJN5_THECC (Ribosomal protein L39 family protein OS=Theobroma cacao GN=TCM_036934 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match: A0A0K9NM13_ZOSMR (60S ribosomal protein L39 OS=Zostera marina GN=ZOSMA_82G00750 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-21
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFVIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match: A0A166B2T5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011035 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-21
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match: A0A0F7G6M3_9ROSI (RPL39 OS=Betula luminifera GN=RPL39 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.0e-21
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein)

HSP 1 Score: 100.1 bits (248), Expect = 4.1e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 

Query: 8  IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          +IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

[Close]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match: gi|645227824|ref|XP_008220702.1| (PREDICTED: 60S ribosomal protein L39-1 [Prunus mume])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match: gi|225430396|ref|XP_002285383.1| (PREDICTED: 60S ribosomal protein L39 [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match: gi|296082089|emb|CBI21094.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1   MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
           MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 62  MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 112

[Close]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match: gi|223537230|gb|EEF38862.1| (ribosomal protein L39e, putative [Ricinus communis])

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-21
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFIIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 17 MPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67

[Close]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match: gi|901792874|gb|KMZ57025.1| (60S ribosomal protein L39 [Zostera marina])

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-21
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFVIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g00310.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL391_ARATH2.2e-2294.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2[more]
RL391_ORYSJ6.5e-2294.1260S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2[more]
RL392_ORYSJ6.5e-2294.1260S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2[more]
RL393_ORYSJ6.5e-2294.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1[more]
RL39_MAIZE6.5e-2294.1260S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1[more]
BLAST of Cp4.1LG18g00310.1 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SC04_RICCO2.3e-2198.04Ribosomal protein L39e, putative OS=Ricinus communis GN=RCOM_0701310 PE=3 SV=1[more]
A0A061GJN5_THECC2.3e-2198.04Ribosomal protein L39 family protein OS=Theobroma cacao GN=TCM_036934 PE=3 SV=1[more]
A0A0K9NM13_ZOSMR2.9e-2196.0860S ribosomal protein L39 OS=Zostera marina GN=ZOSMA_82G00750 PE=3 SV=1[more]
A0A166B2T5_DAUCA5.0e-2196.08Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011035 PE=4 SV=1[more]
A0A0F7G6M3_9ROSI5.0e-2196.08RPL39 OS=Betula luminifera GN=RPL39 PE=2 SV=1[more]
BLAST of Cp4.1LG18g00310.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G31985.11.3e-2394.12 Ribosomal protein L39 family protein[more]
AT3G02190.14.1e-2290.20 Ribosomal protein L39 family protein[more]
AT2G25210.12.5e-1995.45 Ribosomal protein L39 family protein[more]
BLAST of Cp4.1LG18g00310.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|645227824|ref|XP_008220702.1|2.5e-2198.04PREDICTED: 60S ribosomal protein L39-1 [Prunus mume][more]
gi|225430396|ref|XP_002285383.1|3.2e-2198.04PREDICTED: 60S ribosomal protein L39 [Vitis vinifera][more]
gi|296082089|emb|CBI21094.3|3.2e-2198.04unnamed protein product [Vitis vinifera][more]
gi|223537230|gb|EEF38862.1|3.2e-2198.04ribosomal protein L39e, putative [Ricinus communis][more]
gi|901792874|gb|KMZ57025.1|4.2e-2196.0860S ribosomal protein L39 [Zostera marina][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023626Ribosomal_L39e_dom_sf
IPR020083Ribosomal_L39_CS
IPR000077Ribosomal_L39
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG18g00310Cp4.1LG18g00310gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG18g00310.1Cp4.1LG18g00310.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g00310.1:five_prime_utr:001Cp4.1LG18g00310.1:five_prime_utr:001five_prime_UTR
Cp4.1LG18g00310.1:five_prime_utr:002Cp4.1LG18g00310.1:five_prime_utr:002five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g00310.1:cds:001Cp4.1LG18g00310.1:cds:001CDS
Cp4.1LG18g00310.1:cds:002Cp4.1LG18g00310.1:cds:002CDS
Cp4.1LG18g00310.1:cds:003Cp4.1LG18g00310.1:cds:003CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g00310.1:three_prime_utr:001Cp4.1LG18g00310.1:three_prime_utr:001three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39eHAMAPMF_00629Ribosomal_L39ecoord: 1..51
score: 12
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 2..51
score: 3.2
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..49
score: 6.7
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 30..46
scor
IPR023626Ribosomal protein L39e domainGENE3DG3DSA:1.10.1620.10coord: 2..51
score: 1.6
IPR023626Ribosomal protein L39e domainunknownSSF48662Ribosomal protein L39ecoord: 3..50
score: 1.27
NoneNo IPR availablePRODOMPD007914coord: 1..37
score: 2.