Cp4.1LG18g00240.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g00240.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ATP-dependent DNA helicase pcrA
Location	Cp4.1LG18 : 391583 .. 392970 (+)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGTGGCTAGAAATGAAGGTGACTTGGTGGCGAAGTTCTATTTTGCAAAGAGGATGCTCGTGTGGGAGATTTTGAGAAATGGGTTGAAAGAAAAAGTTGAAATTGAATGGTCAAATATTATAGGAATCCAAGCTTTCATGGAAGAAAACAAACGAGGAATCTTGGAAGTCGAGGTAATTACTCCTAAGAACGTAGTAGACCTTCGCAATATTTTTTTTGCACATATCGAAAATGTCAAAACTAAGATTGTACTTCAAAATCAGTATATATTGTACTCTTTGAGCTTTTCTTTCGAGTTTCCACACCTTTGTAAGGAATATTTCATTCCCCTCTCCAATTAACGTGGGATCTCACAATCCGCCCCTCTTGGGAGCCGAACGTCTTCGTTGGCATACCACACAATGTCCGACTCTAATACATTTGTAACCGCTCAAGCCCACCATTAGCATATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCTTCTCAAGATTTTTAAAACGCGTCTATTAGGAAAGGTTTCCACACCTTTATAAAGAATGCTTCGCTCCCCTCTCCAACCGATGTGGTATCTCACAATCAACTATTTGGGGGGCCAGCATCCTCATGGCACTTCGCCCGATGTCTGGCTATGATACCATTTGTAACAACCCAAGCCCACTAGCTAGCAGATATTGTCCTCTTTGGTATTTTCGTTAAGGGAGAGATTTTCACATCTTTATAAGAAATACTTGGTTCCTCTCTCCAACTAACGTGCGATCTCACAATCACGTCTACCATTGACTTGCCATCTGAAATTATTTTTTAGTTTTAAGAGATTCATCCCAAGTAACAAATATATTTTTATTATCGGTCATCTTACAACCACGATCAAGACACCATGTAAACTCTACGACATTGACTCGAGCACTACAAATAATTACTCCAATTTTCATAGTTATCTGATTATGAGACGGGTTGTTTACGGTTTACCCCGTGTTTTCCTTTTTGGGGTTTTTCAGCTGCACAAGCCACCAAAATTCTACAAAGAGATCGAACCCGAGCCACGGAAACACACGCAATGGACCGATGGATTGGATTTTACAGATGGTCAAGCTTATGTAAACAGGTTTAGTTCGTTTTGGTGATCGCATGAGATGAATTAATGATCAAGAGATCTATAAAGTTAACATATTTATGTTGTTGTCCTAAACTTTTAGGAGGCATTGCATTGTGTTTCCTCCAAGAGTGTTGGACAAACACTATCAGAAACTAAAAGATAAGGATGAGCGTTTGTTCGAGTTGAGCCGAAGGCCATTTCCCACATTCAATTCGCCCTATTTCCCCTCGGAAGCTGTTTTCAATCAAATTTCTCCTATTCAATTTGAAGAAATATACTGTGAGTAA

mRNA sequence

GTAGTGGCTAGAAATGAAGGTGACTTGGTGGCGAAGTTCTATTTTGCAAAGAGGATGCTCGTGTGGGAGATTTTGAGAAATGGGTTGAAAGAAAAAGTTGAAATTGAATGGTCAAATATTATAGGAATCCAAGCTTTCATGGAAGAAAACAAACGAGGAATCTTGGAAGTCGAGCTGCACAAGCCACCAAAATTCTACAAAGAGATCGAACCCGAGCCACGGAAACACACGCAATGGACCGATGGATTGGATTTTACAGATGGTCAAGCTTATGTAAACAGGAGGCATTGCATTGTGTTTCCTCCAAGAGTGTTGGACAAACACTATCAGAAACTAAAAGATAAGGATGAGCGTTTGTTCGAGTTGAGCCGAAGGCCATTTCCCACATTCAATTCGCCCTATTTCCCCTCGGAAGCTGTTTTCAATCAAATTTCTCCTATTCAATTTGAAGAAATATACTGTGAGTAA

Coding sequence (CDS)

GTAGTGGCTAGAAATGAAGGTGACTTGGTGGCGAAGTTCTATTTTGCAAAGAGGATGCTCGTGTGGGAGATTTTGAGAAATGGGTTGAAAGAAAAAGTTGAAATTGAATGGTCAAATATTATAGGAATCCAAGCTTTCATGGAAGAAAACAAACGAGGAATCTTGGAAGTCGAGCTGCACAAGCCACCAAAATTCTACAAAGAGATCGAACCCGAGCCACGGAAACACACGCAATGGACCGATGGATTGGATTTTACAGATGGTCAAGCTTATGTAAACAGGAGGCATTGCATTGTGTTTCCTCCAAGAGTGTTGGACAAACACTATCAGAAACTAAAAGATAAGGATGAGCGTTTGTTCGAGTTGAGCCGAAGGCCATTTCCCACATTCAATTCGCCCTATTTCCCCTCGGAAGCTGTTTTCAATCAAATTTCTCCTATTCAATTTGAAGAAATATACTGTGAGTAA

Protein sequence

VVARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHKPPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFELSRRPFPTFNSPYFPSEAVFNQISPIQFEEIYCE

Homology

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL
Match: A0A0A0M1F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.5e-68
Identity = 127/154 (82.47%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 1   VVARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELH 60
           +VA+NEGDLVAKFYFAKR LVWEILRNGLK+K+EIEWSNIIGIQAF+EE+K GILEVEL+
Sbjct: 122 LVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELN 181

Query: 61  KPPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLF 120
            PPKFYKEIEPEPRKHTQWTDG DFT+GQAYVNRRHCIVFPP+VLDKHY+KLKDKD+ LF
Sbjct: 182 HPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLF 241

Query: 121 ELSRRPFPTFNSPYFPSEAVF-NQISP-IQFEEI 153
           ELSRRPFPT +  YF SE  F NQIS  IQFE+I
Sbjct: 242 ELSRRPFPTLHFSYFSSEVAFNNQISSIIQFEDI 275

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL
Match: A0A067H2D5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-43
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 2   VARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHK 61
           V R+EGDLVAK Y+AK+ LVWE L   LK K+EI+W++IIGI+A  EEN+ GILE+EL +
Sbjct: 148 VTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEENEPGILELELKQ 207

Query: 62  PPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFE 121
           PP F+ EI+P+PRKHT W    DFT GQA V R+H + FPP VLD+H++KL   D RLFE
Sbjct: 208 PPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHFEKLLQCDSRLFE 267

Query: 122 LSRRPFPTFNSPYFPSEAVF 142
           LSR+PFPT +SPYF    +F
Sbjct: 268 LSRKPFPTLDSPYFHQSCIF 287

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL
Match: V4T5S9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-43
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 2   VARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHK 61
           V R+EGDLVAK Y+AK+ LVWE L   LK K+EI+W++IIGI+A  EEN+ GILE+EL +
Sbjct: 148 VTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATTEENEPGILELELKQ 207

Query: 62  PPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFE 121
           PP F+ EI+P+PRKHT W    DFT GQA V R+H + FPP VLD+H++KL   D RLFE
Sbjct: 208 PPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHFEKLLQCDSRLFE 267

Query: 122 LSRRPFPTFNSPYFPSEAVF 142
           LSR+PFPT +SPYF    +F
Sbjct: 268 LSRKPFPTLDSPYFHQSCIF 287

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL
Match: B9I6Z7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01040g PE=4 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 3.2e-42
Identity = 80/136 (58.82%), Postives = 106/136 (77.94%), Query Frame = 1


Query: 3   ARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHKP 62
           +RNEGDLVAK YFAK+ LVWE+L+ GLK K+EI+W++IIGI A M+EN+ GIL++EL++P
Sbjct: 142 SRNEGDLVAKCYFAKKKLVWELLKGGLKNKIEIQWNDIIGINALMQENQLGILQIELNQP 201

Query: 63  PKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFEL 122
           P F++E +P+PRKHT W    DFT GQA + RRH + FP   LDKHY+KL   + RLFEL
Sbjct: 202 PTFHEETDPQPRKHTIWKPASDFTGGQASICRRHFLTFPAGYLDKHYEKLLLNEPRLFEL 261

Query: 123 SRRPFPTFNSPYFPSE 139
           S++ FPT  +PYF S+
Sbjct: 262 SKQSFPTLKNPYFRSK 277

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL
Match: A0A022RAG3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.8e-41
Identity = 78/132 (59.09%), Postives = 99/132 (75.00%), Query Frame = 1


Query: 4   RNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHKPP 63
           R+EGDL AK Y+AKR LVWE+L   LK K+EI+WS+IIGI+A + +N+ G LE+EL+ PP
Sbjct: 144 RHEGDLTAKLYYAKRKLVWEVLDGALKSKIEIQWSDIIGIRAILPDNEHGTLEIELNNPP 203

Query: 64  KFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFELS 123
            +Y+EI P+PRKHT W    DFT GQA + RRH + FP  +LDKHY+KL   DERLF LS
Sbjct: 204 LYYREINPQPRKHTLWQQSSDFTGGQAPIWRRHYVKFPAGILDKHYEKLLQCDERLFALS 263

Query: 124 RRPFPTFNSPYF 136
           ++PFPT  S YF
Sbjct: 264 QKPFPTCESAYF 275

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TAIR10
Match: AT2G24100.1 (AT2G24100.1 unknown protein)

HSP 1 Score: 147.9 bits (372), Expect = 5.2e-36
Identity = 68/135 (50.37%), Postives = 95/135 (70.37%), Query Frame = 1


Query: 3   ARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHKP 62
           +R EGDLVAK YFAK  LVWE+L  GLK K+EI+WS+I+ ++A + E++ G L + L + 
Sbjct: 128 SRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANLPEDEPGTLTIVLARR 187

Query: 63  PKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFEL 122
           P F++E  P+PRKHT W    DFTDGQA +NR+H +  PP +++KH++KL   D RLF L
Sbjct: 188 PLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPPGIMNKHFEKLVQCDHRLFCL 247

Query: 123 SRRPFPTFNSPYFPS 138
           SR+P     +P+F S
Sbjct: 248 SRQPEINLAAPFFDS 262

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TAIR10
Match: AT4G30780.1 (AT4G30780.1 unknown protein)

HSP 1 Score: 144.4 bits (363), Expect = 5.7e-35
Identity = 69/144 (47.92%), Postives = 97/144 (67.36%), Query Frame = 1


Query: 3   ARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHKP 62
           +R EGDLVAK YFAK  LVWE+L  GLK K+EI+WS+I+ ++A   E+  G L + L + 
Sbjct: 155 SRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALKANCPEDGPGTLTLVLARQ 214

Query: 63  PKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFEL 122
           P F++E  P+PRKHT W    DFTDGQA +NR+H +     +++KH++KL   D RLF L
Sbjct: 215 PLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCAQGIMNKHFEKLVQCDHRLFHL 274

Query: 123 SRRPFPTFNSPYFPS-EAVFNQIS 146
           SR+P    +SPYF + +++F   S
Sbjct: 275 SRQPEIAIDSPYFDARQSIFEDPS 298

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TAIR10
Match: AT3G05770.1 (AT3G05770.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-24
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 1


Query: 2   VARNEGDLVAKFYFAKRMLVWEIL-------RNGLKEKVEIEWSNIIGI-QAFMEENKRG 61
           VA+N  D+VAKFYFAK+ L+WE L          LK K+EI+W+++    ++    ++ G
Sbjct: 89  VAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRLKSKIEIQWNDVSSFEESINSRDETG 148

Query: 62  ILEVELHKPPKFYKEIEPEPRKHTQWTD-GLDFTDGQAYVNRRHCIVFPPRVLDKHYQKL 121
           IL++EL K P F+ E  P+  KHTQW     DFT  QA   RRH + FPP VL K+ +KL
Sbjct: 149 ILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTGDQASYYRRHTLHFPPGVLQKNLEKL 208

Query: 122 KDKDERLFELSRRPFPTFNSPYF 136
              D    +L + PFP   S YF
Sbjct: 209 L-TDSFWSKLYKVPFPVHESLYF 230

[Close]

BLAST of Cp4.1LG18g00240.1 vs. TAIR10
Match: AT1G54300.1 (AT1G54300.1 unknown protein)

HSP 1 Score: 107.5 bits (267), Expect = 7.7e-24
Identity = 62/146 (42.47%), Postives = 83/146 (56.85%), Query Frame = 1


Query: 1   VVARNEGDLVAKFYFAKRMLVWEILRN-------GLKEKVEIEWSNIIGI-QAFMEENKR 60
           VVA+N  D+VAKFYFAK+ L+WE L          LK K+EI+W+++    ++    ++ 
Sbjct: 15  VVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDVSSFEESISSRDET 74

Query: 61  GILEVELHKPPKFYKEIEPEPRKHTQWTD-GLDFTDGQAYVNRRHCIVFPPRVLDKHYQK 120
           GIL++EL K P F+ E  P+  KHTQW     DFT   A   RRH + FPP VL K+ +K
Sbjct: 75  GILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTLHFPPGVLQKNLEK 134

Query: 121 LKDKDERLFELSRRPFPTFNSPYFPS 138
           L   D    +L   PFP   S YF S
Sbjct: 135 LV-TDSFWSKLYEVPFPVHESRYFDS 159

[Close]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr
Match: gi|700210915|gb|KGN66011.1| (hypothetical protein Csa_1G561420 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 127/154 (82.47%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 1   VVARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELH 60
           +VA+NEGDLVAKFYFAKR LVWEILRNGLK+K+EIEWSNIIGIQAF+EE+K GILEVEL+
Sbjct: 122 LVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELN 181

Query: 61  KPPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLF 120
            PPKFYKEIEPEPRKHTQWTDG DFT+GQAYVNRRHCIVFPP+VLDKHY+KLKDKD+ LF
Sbjct: 182 HPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLF 241

Query: 121 ELSRRPFPTFNSPYFPSEAVF-NQISP-IQFEEI 153
           ELSRRPFPT +  YF SE  F NQIS  IQFE+I
Sbjct: 242 ELSRRPFPTLHFSYFSSEVAFNNQISSIIQFEDI 275

[Close]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr
Match: gi|659099332|ref|XP_008450546.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-67
Identity = 126/154 (81.82%), Postives = 140/154 (90.91%), Query Frame = 1


Query: 1   VVARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELH 60
           +VA+NEGDLVAKFYFAKR LVWEILRNGLK+K+EIEWSNIIGIQAF+EE+K GILEVEL+
Sbjct: 122 LVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELN 181

Query: 61  KPPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLF 120
            PPKFYKEIEPEPRKHTQWTDG DFT+GQAYVNRRHCIVFPP+VLDKHY+KLKDKD+ LF
Sbjct: 182 HPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYVNRRHCIVFPPKVLDKHYEKLKDKDKHLF 241

Query: 121 ELSRRPFPTFNSPYFPSEAVF-NQISP-IQFEEI 153
           ELS+RPFPT +  YF SE  F NQIS  IQFE+I
Sbjct: 242 ELSQRPFPTLHFSYFSSEVAFSNQISSIIQFEDI 275

[Close]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr
Match: gi|659099334|ref|XP_008450547.1| (PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 2.9e-65
Identity = 125/154 (81.17%), Postives = 139/154 (90.26%), Query Frame = 1


Query: 1   VVARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELH 60
           +VA+NEGDLVAKFYFAKR LVWEILRNGLK+K+EIEWSNIIGIQAF+EE+K GILEVEL+
Sbjct: 122 LVAKNEGDLVAKFYFAKRQLVWEILRNGLKQKIEIEWSNIIGIQAFLEEDKPGILEVELN 181

Query: 61  KPPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLF 120
            PPKFYKEIEPEPRKHTQWTDG DFT+GQAYVN RHCIVFPP+VLDKHY+KLKDKD+ LF
Sbjct: 182 HPPKFYKEIEPEPRKHTQWTDGSDFTEGQAYVN-RHCIVFPPKVLDKHYEKLKDKDKHLF 241

Query: 121 ELSRRPFPTFNSPYFPSEAVF-NQISP-IQFEEI 153
           ELS+RPFPT +  YF SE  F NQIS  IQFE+I
Sbjct: 242 ELSQRPFPTLHFSYFSSEVAFSNQISSIIQFEDI 274

[Close]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr
Match: gi|641862999|gb|KDO81686.1| (hypothetical protein CISIN_1g009123mg [Citrus sinensis])

HSP 1 Score: 182.2 bits (461), Expect = 7.0e-43
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 2   VARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHK 61
           V R+EGDLVAK Y+AK+ LVWE L   LK K+EI+W++IIGI+A  EEN+ GILE+EL +
Sbjct: 148 VTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEENEPGILELELKQ 207

Query: 62  PPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFE 121
           PP F+ EI+P+PRKHT W    DFT GQA V R+H + FPP VLD+H++KL   D RLFE
Sbjct: 208 PPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHFEKLLQCDSRLFE 267

Query: 122 LSRRPFPTFNSPYFPSEAVF 142
           LSR+PFPT +SPYF    +F
Sbjct: 268 LSRKPFPTLDSPYFHQSCIF 287

[Close]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr
Match: gi|985440506|ref|XP_006472191.2| (PREDICTED: uncharacterized protein LOC102619867 [Citrus sinensis])

HSP 1 Score: 182.2 bits (461), Expect = 7.0e-43
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 1


Query: 2   VARNEGDLVAKFYFAKRMLVWEILRNGLKEKVEIEWSNIIGIQAFMEENKRGILEVELHK 61
           V R+EGDLVAK Y+AK+ LVWE L   LK K+EI+W++IIGI+A  EEN+ GILE+EL +
Sbjct: 147 VTRHEGDLVAKSYYAKKKLVWEFLEKSLKRKIEIQWADIIGIRATAEENEPGILELELKQ 206

Query: 62  PPKFYKEIEPEPRKHTQWTDGLDFTDGQAYVNRRHCIVFPPRVLDKHYQKLKDKDERLFE 121
           PP F+ EI+P+PRKHT W    DFT GQA V R+H + FPP VLD+H++KL   D RLFE
Sbjct: 207 PPTFHHEIDPQPRKHTNWRLTEDFTGGQAPVFRKHYLKFPPGVLDRHFEKLLQCDSRLFE 266

Query: 122 LSRRPFPTFNSPYFPSEAVF 142
           LSR+PFPT +SPYF    +F
Sbjct: 267 LSRKPFPTLDSPYFHQSCIF 286

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g00240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG18g00240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M1F5_CUCSA	7.5e-68	82.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G561420 PE=4 SV=1	[more]
A0A067H2D5_CITSI	4.9e-43	60.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009123mg PE=4 SV=1	[more]
V4T5S9_9ROSI	4.9e-43	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003523mg PE=4 SV=1	[more]
B9I6Z7_POPTR	3.2e-42	58.82	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s01040g PE=4 SV=2	[more]
A0A022RAG3_ERYGU	7.8e-41	59.09	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005144mg PE=4 SV=1	[more]

BLAST of Cp4.1LG18g00240.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24100.1	5.2e-36	50.37	unknown protein	[more]
AT4G30780.1	5.7e-35	47.92	unknown protein	[more]
AT3G05770.1	3.5e-24	42.66	unknown protein	[more]
AT1G54300.1	7.7e-24	42.47	unknown protein	[more]

BLAST of Cp4.1LG18g00240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210915\|gb\|KGN66011.1\|	1.1e-67	82.47	hypothetical protein Csa_1G561420 [Cucumis sativus]	[more]
gi\|659099332\|ref\|XP_008450546.1\|	3.1e-67	81.82	PREDICTED: uncharacterized protein LOC103492114 isoform X1 [Cucumis melo]	[more]
gi\|659099334\|ref\|XP_008450547.1\|	2.9e-65	81.17	PREDICTED: uncharacterized protein LOC103492114 isoform X2 [Cucumis melo]	[more]
gi\|641862999\|gb\|KDO81686.1\|	7.0e-43	60.00	hypothetical protein CISIN_1g009123mg [Citrus sinensis]	[more]
gi\|985440506\|ref\|XP_006472191.2\|	7.0e-43	60.00	PREDICTED: uncharacterized protein LOC102619867 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG18g00240	Cp4.1LG18g00240	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00240.1:cds:001	Cp4.1LG18g00240.1:cds:001	CDS
Cp4.1LG18g00240.1:cds:002	Cp4.1LG18g00240.1:cds:002	CDS
Cp4.1LG18g00240.1:cds:003	Cp4.1LG18g00240.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG18g00240.1	Cp4.1LG18g00240.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33494	FAMILY NOT NAMED	coord: 2..137 score: 2.1