Cp4.1LG17g08390.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g08390.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Non-specific lipid-transfer protein
Location	Cp4.1LG17 : 5304583 .. 5305889 (-)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTCTTAAAGTAACCATAGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGACGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCCAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTGTTCCAAGTATGAAAATCTATACACAAAAATTGAATTTTTGTTTTTATTGCGATATAATATCTAGATAATATATTCTTTTATAATATTTAATTAGTTTTTTGTATCCTATTTATGAATATCAACGAGAACACACCTTCAATTTTAATCCTATTTATTGTTAATTAGCGTTGTTTGTGTTGTTAATTTTCAGGATTAGTTGATTATGAGACGGGAGCTGGCAGCATTCTACTATAAACTTGGAGAAATTAGTATTTATTATTATGTAATCAAATAAAATAAAAGTAGCTGGAATGGAATCTAATCTCGTGGAATTTTAGATTCCTTTTATGTCTTCATATCATGTGCTCTGAGTGTACCTTTGTTTCTTCTTATATTCATATAAAAATATGTTATCCTATTATTTCCTTTTCAACTTTTCAATTATTTTCGTATACGGGTTTGACAGATATTGTCTCAGGTCCGTAGAAAACTAAGGTCGATACAGTTAGACAAACATGACTCTCCATAATGGTATAATATTGTCGACTTTGAGCATAGGCTTTCCAAAAGATCTCGTCCCAATGGAGAGAGTATTTTTTATTTATAAACTCATGATCATTCCCTAAATTAACCGATGTGGGACTTTCATCATCCAACAGATACAAATAGTATCGGAGCCAGACATCGAGTGGTGTTCTAGCAAGAACACTGGACCTCGAAAAAGGGTGGATTGTGAAATCCCACATCGGTTGAAGAAGAAAACGAAACATTTCTTATAAGAGTGTGGAAAGCTCTCGTTAGCATTCAAAAATTAAAAGAAAATGGTAGAAAATGTGGAAGACAAAAAGGCAAGAGATTAAATTATTTTTTGTTTGGAATAATGATTTTGATGGAATATTTGAGCTGAAACTGAAACATTACCTGTCAGATTTGGAACACACCAACAGTTCACATGGATCCAACGACCCACATGCATCTGTTCGGACAAAAAAAGCAGGTTGA

mRNA sequence

ATGGCATCTCTTAAAGTAACCATAGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGACGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCCAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTATTTGGAACACACCAACAGTTCACATGGATCCAACGACCCACATGCATCTGTTCGGACAAAAAAAGCAGGTTGA

Coding sequence (CDS)

ATGGCATCTCTTAAAGTAACCATAGCGTTCATGATGCTATTGCTTCTTCAAGAATCAGAGGCAGCAATCTCATGCAATGACGTGACAAAGGACTTGACGCCATGCGTGAGCTACCTCATGAGCGGCAGTGGGAAGCCGCCAAGCGCATGCTGCGATGGTGCCAAAGCGCTGTCATTGGCAGCCACAAGCAGTGATGACAAGAAGGCTGCATGCCAATGCATCAAATCAGTTGCTGGTAATGTGAAATACAACGCTAAATTGGCTGAAGATCTTCCTGGAAATTGCGGCATTACACTGCCTTTTAGCATCTCCGCTGGAATTGACTATTTGGAACACACCAACAGTTCACATGGATCCAACGACCCACATGCATCTGTTCGGACAAAAAAAGCAGGTTGA

Protein sequence

MASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDYLEHTNSSHGSNDPHASVRTKKAG

Homology

[Close]

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 19  SEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACQCIKSVA 78
           SE+AISC+ V +DL PCVSYL SGSG PP  CCDG K+L+ A T+S DKKAACQCIKSVA
Sbjct: 22  SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81

Query: 79  GNVKYNAKLAEDLPGNCGITLPFSISAGID 109
            +V    +LA+ L  NCG +LP   S  +D
Sbjct: 82  NSVTVKPELAQALASNCGASLPVDASPTVD 111

[Close]

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 1


Query: 2   ASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           AS  V +A +  +LL  ++AAISC  V+  L+PC+SY      KPP+ACC G K L+ AA
Sbjct: 6   ASQLVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +D
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVD 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.3e-20
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1


Query: 2   ASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +LL  ++AAISC  V+  L+PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +D
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVD 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 1


Query: 2   ASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +L+  ++AAISC  V+  L+PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
            S+ DK+AAC+CIKS AG +  NA  A  +P  CG+++P++ISA +D
Sbjct: 66  QSTADKQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVD 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 1


Query: 2   ASLKVTIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAA 61
           A+  V +A +  +LL  ++AAISC  V+  L+PC+SY      KPP ACC G K L+ AA
Sbjct: 6   ATQLVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAA 65

Query: 62  TSSDDKKAACQCIKSVAGNVK-YNAKLAEDLPGNCGITLPFSISAGID 109
            S+ DK+AAC+C+KS+A ++K  N      +PG CG+++PF IS   D
Sbjct: 66  QSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTD 113

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL
Match: A0A0A0K657_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430200 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.9e-37
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1


Query: 8   IAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           +   + LLLQ S+A ISC+DVTKDL PCVSYLMSGSGKPPSACCDGAKALS AATSS DK
Sbjct: 14  VLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADK 73

Query: 68  KAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KAAC+CIKS A NV YN KLA+DLP NCGI+LPFSISAGID
Sbjct: 74  KAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGID 114

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL
Match: I1MJG4_SOYBN (Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_15G265900 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 9   TLVLLILLLASTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 68

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 69  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL
Match: A0A0B2QNS7_GLYSO (Non-specific lipid-transfer protein OS=Glycine soja GN=glysoja_026558 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 33  TLVLLILLLATTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 92

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 93  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 134

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL
Match: C6SXS2_SOYBN (Non-specific lipid-transfer protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 33  TLVLLILLLATTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 92

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 93  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 134

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL
Match: I1KTU5_SOYBN (Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_08G161700 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 33  TLVLLILLLATTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 92

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 93  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 134

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10
Match: AT2G18370.1 (AT2G18370.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 6.0e-25
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 19  SEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACQCIKSVA 78
           SE+AISC+ V +DL PCVSYL SGSG PP  CCDG K+L+ A T+S DKKAACQCIKSVA
Sbjct: 22  SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVA 81

Query: 79  GNVKYNAKLAEDLPGNCGITLPFSISAGID 109
            +V    +LA+ L  NCG +LP   S  +D
Sbjct: 82  NSVTVKPELAQALASNCGASLPVDASPTVD 111

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10
Match: AT5G01870.1 (AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-18
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 1


Query: 19  SEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAACQCIKSVA 78
           SEAAISCN V  +L PCV Y++ G G  P +CC+G + LS  ATS+ DK+  C+CIKSV 
Sbjct: 20  SEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVV 79

Query: 79  GNVKYNA---KLAEDLPGNCGITLPFSI 104
           G V Y++   K A  LPG CG+ LP+ I
Sbjct: 80  GRVSYSSIYLKKAAALPGKCGVKLPYKI 106

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10
Match: AT5G59320.1 (AT5G59320.1 lipid transfer protein 3)

HSP 1 Score: 77.0 bits (188), Expect = 9.5e-15
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T   + + ++   +AAISC  V   L PC +YL  G   PPS CC G K L+  A ++ D
Sbjct: 9   TCLVLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSMAKTTPD 68

Query: 67  KKAACQCIKSVAGNVK-YNAKLAEDLPGNCGITLPFSIS 105
           ++ AC+CI+S A ++   N  LA  LPG CG+++P+ IS
Sbjct: 69  RQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPIS 106

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 1


Query: 8   IAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           +A  ++L L   EAA+SCN V  DL PC+SY+  G G  P+ CC+G   L   A +S D+
Sbjct: 6   LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVDR 65

Query: 68  KAACQCIKSVAGNVKYNAKL---AEDLPGNCGITLPFSISAGID 109
           +  C+CIKS  G +  + +    A +LP  CG+ LP+  S   D
Sbjct: 66  QGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTD 108

[Close]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10
Match: AT5G59310.1 (AT5G59310.1 lipid transfer protein 4)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-13
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T   + + ++   +AAI+C  V   L+PC+ YL  G   PP  CC G K L+  A ++ D
Sbjct: 9   TCFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPP-PCCAGVKKLNGMAQTTPD 68

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSIS 105
           ++ AC+C++S A  V  N  LA  LPG CG+++P+ IS
Sbjct: 69  RQQACRCLQSAAKGV--NPSLASGLPGKCGVSIPYPIS 103

[Close]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr
Match: gi|449436232|ref|XP_004135897.1| (PREDICTED: non-specific lipid-transfer protein 8-like [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-36
Identity = 80/101 (79.21%), Postives = 87/101 (86.14%), Query Frame = 1


Query: 8   IAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           +   + LLLQ S+A ISC+DVTKDL PCVSYLMSGSGKPPSACCDGAKALS AATSS DK
Sbjct: 14  VLLFVFLLLQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDGAKALSSAATSSADK 73

Query: 68  KAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KAAC+CIKS A NV YN KLA+DLP NCGI+LPFSISAGID
Sbjct: 74  KAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGID 114

[Close]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr
Match: gi|659122587|ref|XP_008461223.1| (PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-36
Identity = 81/101 (80.20%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 8   IAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDK 67
           I   + LLL  S+A ISC+DVTKDL PCVSYL+SGSGKPPSACCDGAKALS AATS  DK
Sbjct: 10  ILLFVFLLLGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATSGADK 69

Query: 68  KAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KAACQCIKS A NV YNAKLA+DLP NCGITLPFSISAGID
Sbjct: 70  KAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGID 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr
Match: gi|955366595|ref|XP_003546844.2| (PREDICTED: non-specific lipid-transfer protein 8-like [Glycine max])

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 9   TLVLLILLLASTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 68

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 69  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 110

[Close]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr
Match: gi|351725739|ref|NP_001236847.1| (uncharacterized protein LOC100306055 [Glycine max])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 33  TLVLLILLLATTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 92

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 93  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 134

[Close]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr
Match: gi|734376555|gb|KHN21357.1| (Non-specific lipid-transfer protein 8 [Glycine soja])

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-29
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 1


Query: 7   TIAFMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDGAKALSLAATSSDD 66
           T+  ++LLL   SEAAISC+DV KDL PCVSYL+SGSG+PP+ACC GAKAL+ AAT+S+D
Sbjct: 33  TLVLLILLLATTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSED 92

Query: 67  KKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGID 109
           KKAAC CIKS + ++  N++LA+ LPGNCGITLP +IS   D
Sbjct: 93  KKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNAD 134

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g08390.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NLTP8_ARATH	1.1e-23	60.00	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1	[more]
NLT41_HORVU	1.9e-20	47.66	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1	[more]
NLT43_HORVU	9.3e-20	46.73	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1	[more]
NLT42_HORVU	1.6e-19	45.79	Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1	[more]
NLTP3_HORVU	1.0e-18	44.44	Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g08390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K657_CUCSA	9.9e-37	79.21	Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430200 PE=3 SV=1	[more]
I1MJG4_SOYBN	1.5e-29	64.71	Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_15G265900 PE=3 SV=1	[more]
A0A0B2QNS7_GLYSO	2.0e-29	64.71	Non-specific lipid-transfer protein OS=Glycine soja GN=glysoja_026558 PE=3 SV=1	[more]
C6SXS2_SOYBN	2.0e-29	64.71	Non-specific lipid-transfer protein OS=Glycine max PE=2 SV=1	[more]
I1KTU5_SOYBN	2.0e-29	64.71	Non-specific lipid-transfer protein OS=Glycine max GN=GLYMA_08G161700 PE=3 SV=1	[more]

BLAST of Cp4.1LG17g08390.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18370.1	6.0e-25	60.00	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G01870.1	3.2e-18	52.27	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT5G59320.1	9.5e-15	40.40	lipid transfer protein 3	[more]
AT3G08770.2	1.2e-14	39.42	lipid transfer protein 6	[more]
AT5G59310.1	1.1e-13	38.78	lipid transfer protein 4	[more]

BLAST of Cp4.1LG17g08390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449436232\|ref\|XP_004135897.1\|	1.4e-36	79.21	PREDICTED: non-specific lipid-transfer protein 8-like [Cucumis sativus]	[more]
gi\|659122587\|ref\|XP_008461223.1\|	3.2e-36	80.20	PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo]	[more]
gi\|955366595\|ref\|XP_003546844.2\|	2.2e-29	64.71	PREDICTED: non-specific lipid-transfer protein 8-like [Glycine max]	[more]
gi\|351725739\|ref\|NP_001236847.1\|	2.9e-29	64.71	uncharacterized protein LOC100306055 [Glycine max]	[more]
gi\|734376555\|gb\|KHN21357.1\|	2.9e-29	64.71	Non-specific lipid-transfer protein 8 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008289	lipid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006869	lipid transport

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store
IPR000528	Plant_LTP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008289	lipid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g08390	Cp4.1LG17g08390	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g08390.1:cds:001	Cp4.1LG17g08390.1:cds:001	CDS
Cp4.1LG17g08390.1:cds:002	Cp4.1LG17g08390.1:cds:002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g08390.1	Cp4.1LG17g08390.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 45..59 score: 1.4E-18coord: 24..40 score: 1.4E-18coord: 100..111 score: 1.4E-18coord: 82..99 score: 1.4E-18coord: 66..81 score: 1.4
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 25..101 score: 1.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 25..109 score: 4.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 22..108 score: 2.65
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 22..108 score: 4.2
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 1..108 score: 2.6
None	No IPR available	PANTHER	PTHR33076:SF4	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 1..108 score: 2.6