Cp4.1LG17g03240.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g03240.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Potassium voltage-gated channel subfamily H member 7
Location	Cp4.1LG17 : 1598012 .. 1599750 (-)
Sequence length	1291

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACCTTAATCCATGGAGTTGGCAACCCACAAGCACAGCTCAATTCTTATACATCTTCTAAACACATGCATGTGAAAGAAAGCAAATCCGAAACAGCAGGAGACAAAAGAAAAAGAGAGGCCAACTACCCATCTTGCTATTTGAAACCAACAGGAACAGTCAATTACTTCTCCAAATAAACAAGGAGAAGACAATTTCTCTTGAATTTCAGCCTTTTACCCCACAAATGAGTGCTTTTCTAAAGCAAAAGAACAACAACTTGTAGTGGTGGCATGATCATGATTGTGCTTTTCCCACTCTGTTTAAGTGTACAGCAAACTGTAATCATGATCACAAAACTCCCCTCTCCATTACTTTTTGTGGCAAATCCCCAAATCTTCAGCATGCCATCTGTGTTTAATCAAATGCTTTAACGATTCTAACCTTCTTCTTCTTCCCTCACAGGGCTCCAAGTTTGGTCATGGTTTCAACGGATCAAACCGGTGAAGAGAGGCGTTTCTTTGTTGATTGTACTCCTGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAAGCTTTAACAACAAAGGGGAAGGAAGCAAGACGAGCACCATTTTCAGGTCACGTTCTGTTGAAGAAAAGAGAGATGGGGTCAAGCAAAAATGGCGTAATAATCATGAGCTACAAGATGGTAATGGAAATGGGTCTAATGGGATTCATTTAGAAATCCCAAATCTCAAGAGCAATTTAAAGAAGAAGACAAAGGAGAAGGAGGAAGAGGAGGAGACTTGTCCTACAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGTAAAGATATTGCTCATATCCAAGAATTTGATCCAAGGTATGCTTACTTTATACTCATTTCCAAAGCCCTGCTCTTCAAGTAGATATTAAATTCTAAGTTAATAATGGCCTCTTTTTCATGATTGAGCTTAAATTATGCCAAGAAATAGAGCAACATGTTGTATTTGAAAACCGTAGTTCATGATCAAGAACTGTTTCTGAGAGCTTCAAAGATGAATTTGTGCTTATTCTGTAAGTTTCTGGTTTTGCCACAGTGTATCAGGAGATGGGGAGCTTGAGGGAGTAAGAAACTCTTGTGTCTGCACGATTCAGTAACAGAAAAGAAAAAGGTATGCTTGTTTTTAGTTTCCTCCCATGAATCTTTCTTTCAATAATGAGTGCAATTTGCTGCAATGACTGAAGAGTGGTAATGACACATAGGGTTAAGTCCTTAGGATTCCTGATGCAAAAGACAATTTGTATTTGATTTTCTTGTTACTGCCCTCTTTTTAGATCTTTTAGAACCTTGAGCCTTCCAACTCGAAAGAAAAAAAATACATGTCAATTACTTTTGGCTTATACCCACGACGATTTTAACTTGTATTTACCTTTAGACGTATCTATAATAGTGAAGTTTTCTTTTAGAATAATGTGTGGGGATACCGAGAAATTGATGCTATGAGCTTCGTGGGAGTCTGCTAAACAAGATTATTAAACGATTGCACTCGAATGATTGGGATCAACCATCTTTGATAGTATGTTCATTTTAGTCGAATCAGCAAAATATTTAGATTTAACCACTTTTCATATCCTAAAACTTGTAATGAATGAAAGATGAAGATGTTGGTATATGATCAAAATTAAGTTGGATCTTTTAGATAGGATTGCTTTCATTTTTGGATCATCTGATCCCAATACT

mRNA sequence

ATGAAAACCTTAATCCATGGAGTTGGCAACCCACAAGCACAGCTCAATTCTTATACATCTTCTAAACACATGCATGTGAAAGAAAGCAAATCCGAAACAGCAGGAGACAAAAGAAAAAGAGAGGCCAACTACCCATCTTGCTATTTGAAACCAACAGGAACATGGTGGCATGATCATGATTGTGCTTTTCCCACTCTGTTTAAGTGTACAGCAAACTGGCTCCAAGTTTGGTCATGGTTTCAACGGATCAAACCGGTGAAGAGAGGCGTTTCTTTGTTGATTGTACTCCTGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAAGCTTTAACAACAAAGGGGAAGGAAGCAAGACGAGCACCATTTTCAGGTCACGTTCTGTTGAAGAAAAGAGAGATGGGGTCAAGCAAAAATGGCGTAATAATCATGAGCTACAAGATGGTAATGGAAATGGGTCTAATGGGATTCATTTAGAAATCCCAAATCTCAAGAGCAATTTAAAGAAGAAGACAAAGGAGAAGGAGGAAGAGGAGGAGACTTGTCCTACAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGTAAAGATATTGCTCATATCCAAGAATTTGATCCAAGTGTATCAGGAGATGGGGAGCTTGAGGGAGTAAGAAACTCTTGTGTCTGCACGATTCAGTAACAGAAAAGAAAAAGGTATGCTTGTTTTTAGTTTCCTCCCATGAATCTTTCTTTCAATAATGAGTGCAATTTGCTGCAATGACTGAAGAGTGGTAATGACACATAGGGTTAAGTCCTTAGGATTCCTGATGCAAAAGACAATTTGTATTTGATTTTCTTGTTACTGCCCTCTTTTTAGATCTTTTAGAACCTTGAGCCTTCCAACTCGAAAGAAAAAAAATACATGTCAATTACTTTTGGCTTATACCCACGACGATTTTAACTTGTATTTACCTTTAGACGTATCTATAATAGTGAAGTTTTCTTTTAGAATAATGTGTGGGGATACCGAGAAATTGATGCTATGAGCTTCGTGGGAGTCTGCTAAACAAGATTATTAAACGATTGCACTCGAATGATTGGGATCAACCATCTTTGATAGTATGTTCATTTTAGTCGAATCAGCAAAATATTTAGATTTAACCACTTTTCATATCCTAAAACTTGTAATGAATGAAAGATGAAGATGTTGGTATATGATCAAAATTAAGTTGGATCTTTTAGATAGGATTGCTTTCATTTTTGGATCATCTGATCCCAATACT

Coding sequence (CDS)

ATGAAAACCTTAATCCATGGAGTTGGCAACCCACAAGCACAGCTCAATTCTTATACATCTTCTAAACACATGCATGTGAAAGAAAGCAAATCCGAAACAGCAGGAGACAAAAGAAAAAGAGAGGCCAACTACCCATCTTGCTATTTGAAACCAACAGGAACATGGTGGCATGATCATGATTGTGCTTTTCCCACTCTGTTTAAGTGTACAGCAAACTGGCTCCAAGTTTGGTCATGGTTTCAACGGATCAAACCGGTGAAGAGAGGCGTTTCTTTGTTGATTGTACTCCTGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAAGCTTTAACAACAAAGGGGAAGGAAGCAAGACGAGCACCATTTTCAGGTCACGTTCTGTTGAAGAAAAGAGAGATGGGGTCAAGCAAAAATGGCGTAATAATCATGAGCTACAAGATGGTAATGGAAATGGGTCTAATGGGATTCATTTAGAAATCCCAAATCTCAAGAGCAATTTAAAGAAGAAGACAAAGGAGAAGGAGGAAGAGGAGGAGACTTGTCCTACAGAAACAAGGAAAGTGAACTGGCCTGATGCCCATGGTAAAGATATTGCTCATATCCAAGAATTTGATCCAAGTGTATCAGGAGATGGGGAGCTTGAGGGAGTAAGAAACTCTTGTGTCTGCACGATTCAGTAA

Protein sequence

MKTLIHGVGNPQAQLNSYTSSKHMHVKESKSETAGDKRKREANYPSCYLKPTGTWWHDHDCAFPTLFKCTANWLQVWSWFQRIKPVKRGVSLLIVLLASAARSRCTAVVCSCYAPSGSFNNKGEGSKTSTIFRSRSVEEKRDGVKQKWRNNHELQDGNGNGSNGIHLEIPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGKDIAHIQEFDPSVSGDGELEGVRNSCVCTIQ

Homology

[Close]

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL
Match: A0A061ELW3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_020382 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-28
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1


Query: 103 SRCTAVVCSCYAPSGSFNNKGEG----SKTSTIFRSRSVEEKRDGVKQKWRNNHEL-QDG 162
           +RCTA+VCSCY PS +F++KG+     S  S+  + RS  EK+DGV ++  N+    QD 
Sbjct: 2   NRCTALVCSCYVPSRNFDSKGDQENSRSSGSSNIKKRSAVEKKDGVMEEVGNDESQGQDR 61

Query: 163 NGNGS-----------NGIHLE-IPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGK 222
             NGS           NG H+E IP  KSNLKK T   +E +    TE RKV+WPDAHGK
Sbjct: 62  ISNGSGGSNSGCSGTYNGPHIELIPTRKSNLKKPTTVDQENQ--LKTERRKVSWPDAHGK 121

Query: 223 DIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           DIAH+QEF+PSVS DGELEGVRNSCVC IQ
Sbjct: 122 DIAHVQEFEPSVSDDGELEGVRNSCVCAIQ 149

[Close]

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL
Match: V4SA72_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006054mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.8e-20
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 1


Query: 90  VSLLIVLLASAARSRCTAVVCSCYAPSGSFNNK-GEGSKTSTIFRSR-SVEEKR-DGVKQ 149
           V ++ VLLA+ A+++CTA+VCSCY PS SF+++  E    S I + R   E KR DGV +
Sbjct: 9   VLVVFVLLAATAQNKCTALVCSCYVPSRSFSSRSSEERDRSNISKKRLCAENKRGDGVTE 68

Query: 150 KWRNNHELQDGNGNGS------NGIHLEI--PNLKSNLKKKTK---EKEEEEETCPTETR 209
           K  +N+ + +  G         N +  +I   NLKS LKK T    E E +E    TE R
Sbjct: 69  KLHSNNNIDETQGQDKSIDGCCNRLDHDIKPTNLKSTLKKTTMTELEAENQEFKKTTEKR 128

Query: 210 K-VNWPDAHGKDIAHIQEFDPS-VSGDGELEGVRNSCVCTIQ 236
           K V WPDA+GKDIAH+ EF+PS  S DGEL  +R SCVCTIQ
Sbjct: 129 KVVTWPDANGKDIAHVHEFEPSTTSEDGELGEIRRSCVCTIQ 170

[Close]

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL
Match: A0A0D2R8L3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G034900 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 152 HELQDGNG-----NGSNGIHLE-IPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGK 211
           HE++  NG     +G+NG H+E IP LKSNLKK T   EE +    T+ RKV+WPDAHGK
Sbjct: 14  HEIRVTNGGNCSSSGTNGPHMELIPTLKSNLKKATATDEENQ--LKTQRRKVSWPDAHGK 73

Query: 212 DIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           DIAH+QEF+PSVS DGEL GVRNSCVC IQ
Sbjct: 74  DIAHVQEFEPSVSDDGELGGVRNSCVCAIQ 101

[Close]

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL
Match: A0A0D2S7U8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G220200 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 150 NNHELQ-----DGNGNGSNGIHLEI-PNLKSNLKKKTK----EKEEEEETCPTETRKVNW 209
           NN ELQ       NG+G+NG H+E  P LKSNLKK T     + + E E   TE RKV+W
Sbjct: 10  NNDELQLSIDKISNGSGTNGSHIEPNPTLKSNLKKTTTAAADDNDGEGELMKTERRKVSW 69

Query: 210 PDAHGKDIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           PDAHGKDIAH++EF+PSVS DGELEGVR SCVC IQ
Sbjct: 70  PDAHGKDIAHVREFEPSVSDDGELEGVRRSCVCVIQ 105

[Close]

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL
Match: A0A0B0N6V3_GOSAR (Potassium voltage-gated channel subfamily H member 7 OS=Gossypium arboreum GN=F383_08208 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.8e-18
Identity = 59/97 (60.82%), Postives = 67/97 (69.07%), Query Frame = 1


Query: 150 NNH-ELQ-----DGNGNGSNGIHLEI-PNLKSNLKKKTK----EKEEEEETCPTETRKVN 209
           NNH ELQ       NG G+N  H+E  P LKSNLKK T     + + E E   TE RKV+
Sbjct: 9   NNHDELQLSIDKISNGGGTNVSHIEPNPTLKSNLKKTTTAAADDNDGEGELMKTERRKVS 68

Query: 210 WPDAHGKDIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           WPDAHGKDIAH++EF+PSVS DGELEGVR SCVC IQ
Sbjct: 69  WPDAHGKDIAHVREFEPSVSDDGELEGVRRSCVCVIQ 105

[Close]

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr
Match: gi|590657008|ref|XP_007034436.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 81/150 (54.00%), Postives = 99/150 (66.00%), Query Frame = 1


Query: 103 SRCTAVVCSCYAPSGSFNNKGEG----SKTSTIFRSRSVEEKRDGVKQKWRNNHEL-QDG 162
           +RCTA+VCSCY PS +F++KG+     S  S+  + RS  EK+DGV ++  N+    QD 
Sbjct: 2   NRCTALVCSCYVPSRNFDSKGDQENSRSSGSSNIKKRSAVEKKDGVMEEVGNDESQGQDR 61

Query: 163 NGNGS-----------NGIHLE-IPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGK 222
             NGS           NG H+E IP  KSNLKK T   +E +    TE RKV+WPDAHGK
Sbjct: 62  ISNGSGGSNSGCSGTYNGPHIELIPTRKSNLKKPTTVDQENQ--LKTERRKVSWPDAHGK 121

Query: 223 DIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           DIAH+QEF+PSVS DGELEGVRNSCVC IQ
Sbjct: 122 DIAHVQEFEPSVSDDGELEGVRNSCVCAIQ 149

[Close]

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr
Match: gi|568873327|ref|XP_006489794.1| (PREDICTED: uncharacterized protein LOC102630808 [Citrus sinensis])

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 77/162 (47.53%), Postives = 102/162 (62.96%), Query Frame = 1


Query: 90  VSLLIVLLASAARSRCTAVVCSCYAPSGSFNNK-GEGSKTSTIFRSRSVEEKR--DGVKQ 149
           V ++ VLLA+ A+++CTA+VCSCY PS SF+++ GE S    I + R   E +  DGV +
Sbjct: 9   VLVVFVLLAATAQNKCTALVCSCYVPSRSFSSRSGEDSDRGNISKRRLCAENKRGDGVTE 68

Query: 150 KWRNNHELQDGNGNGS------NGIHLEIP--NLKSNLKKKTK---EKEEEEETCPTETR 209
           K  +N+ + +  G         NG+  +I   NLKSNLKK T    E E +E    TE R
Sbjct: 69  KLHSNNNIDETQGQDKSIDGCWNGLDHDIKPTNLKSNLKKTTTTEFEAENQEFKKTTEKR 128

Query: 210 KV-NWPDAHGKDIAHIQEFDPS-VSGDGELEGVRNSCVCTIQ 236
           KV  WPDA+GKDIAH+ EF+PS  S DGEL  +R+SCVCTIQ
Sbjct: 129 KVVTWPDANGKDIAHVHEFEPSTTSEDGELGEIRSSCVCTIQ 170

[Close]

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr
Match: gi|567854983|ref|XP_006420611.1| (hypothetical protein CICLE_v10006054mg [Citrus clementina])

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 76/162 (46.91%), Postives = 99/162 (61.11%), Query Frame = 1


Query: 90  VSLLIVLLASAARSRCTAVVCSCYAPSGSFNNK-GEGSKTSTIFRSR-SVEEKR-DGVKQ 149
           V ++ VLLA+ A+++CTA+VCSCY PS SF+++  E    S I + R   E KR DGV +
Sbjct: 9   VLVVFVLLAATAQNKCTALVCSCYVPSRSFSSRSSEERDRSNISKKRLCAENKRGDGVTE 68

Query: 150 KWRNNHELQDGNGNGS------NGIHLEI--PNLKSNLKKKTK---EKEEEEETCPTETR 209
           K  +N+ + +  G         N +  +I   NLKS LKK T    E E +E    TE R
Sbjct: 69  KLHSNNNIDETQGQDKSIDGCCNRLDHDIKPTNLKSTLKKTTMTELEAENQEFKKTTEKR 128

Query: 210 K-VNWPDAHGKDIAHIQEFDPS-VSGDGELEGVRNSCVCTIQ 236
           K V WPDA+GKDIAH+ EF+PS  S DGEL  +R SCVCTIQ
Sbjct: 129 KVVTWPDANGKDIAHVHEFEPSTTSEDGELGEIRRSCVCTIQ 170

[Close]

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr
Match: gi|763760963|gb|KJB28217.1| (hypothetical protein B456_005G034900 [Gossypium raimondii])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 152 HELQDGNG-----NGSNGIHLE-IPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGK 211
           HE++  NG     +G+NG H+E IP LKSNLKK T   EE +    T+ RKV+WPDAHGK
Sbjct: 14  HEIRVTNGGNCSSSGTNGPHMELIPTLKSNLKKATATDEENQ--LKTQRRKVSWPDAHGK 73

Query: 212 DIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           DIAH+QEF+PSVS DGEL GVRNSCVC IQ
Sbjct: 74  DIAHVQEFEPSVSDDGELGGVRNSCVCAIQ 101

[Close]

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr
Match: gi|823177723|ref|XP_012486882.1| (PREDICTED: uncharacterized protein LOC105800351 isoform X1 [Gossypium raimondii])

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 59/96 (61.46%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 150 NNHELQ-----DGNGNGSNGIHLEI-PNLKSNLKKKTK----EKEEEEETCPTETRKVNW 209
           NN ELQ       NG+G+NG H+E  P LKSNLKK T     + + E E   TE RKV+W
Sbjct: 10  NNDELQLSIDKISNGSGTNGSHIEPNPTLKSNLKKTTTAAADDNDGEGELMKTERRKVSW 69

Query: 210 PDAHGKDIAHIQEFDPSVSGDGELEGVRNSCVCTIQ 236
           PDAHGKDIAH++EF+PSVS DGELEGVR SCVC IQ
Sbjct: 70  PDAHGKDIAHVREFEPSVSDDGELEGVRRSCVCVIQ 105

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g03240.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g03240.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061ELW3_THECC	2.3e-28	54.00	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_020382 PE=4 SV=1	[more]
V4SA72_9ROSI	8.8e-20	46.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006054mg PE=4 SV=1	[more]
A0A0D2R8L3_GOSRA	1.1e-19	63.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G034900 PE=4 SV=1	[more]
A0A0D2S7U8_GOSRA	1.5e-19	61.46	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G220200 PE=4 SV=1	[more]
A0A0B0N6V3_GOSAR	4.8e-18	60.82	Potassium voltage-gated channel subfamily H member 7 OS=Gossypium arboreum GN=F3...	[more]

BLAST of Cp4.1LG17g03240.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g03240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590657008\|ref\|XP_007034436.1\|	3.3e-28	54.00	Uncharacterized protein isoform 1 [Theobroma cacao]	[more]
gi\|568873327\|ref\|XP_006489794.1\|	3.6e-22	47.53	PREDICTED: uncharacterized protein LOC102630808 [Citrus sinensis]	[more]
gi\|567854983\|ref\|XP_006420611.1\|	1.3e-19	46.91	hypothetical protein CICLE_v10006054mg [Citrus clementina]	[more]
gi\|763760963\|gb\|KJB28217.1\|	1.6e-19	63.33	hypothetical protein B456_005G034900 [Gossypium raimondii]	[more]
gi\|823177723\|ref\|XP_012486882.1\|	2.2e-19	61.46	PREDICTED: uncharacterized protein LOC105800351 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG17g03240	Cp4.1LG17g03240	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g03240.1:cds:001	Cp4.1LG17g03240.1:cds:001	CDS
Cp4.1LG17g03240.1:cds:002	Cp4.1LG17g03240.1:cds:002	CDS
Cp4.1LG17g03240.1:cds:003	Cp4.1LG17g03240.1:cds:003	CDS
Cp4.1LG17g03240.1:cds:004	Cp4.1LG17g03240.1:cds:004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g03240.1:three_prime_utr:001	Cp4.1LG17g03240.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG17g03240.1	Cp4.1LG17g03240.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 169..189 scor