Cp4.1LG15g03650.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG15g03650.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Cystatin domain containing protein
Location	Cp4.1LG15 : 4903552 .. 4903923 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCTACCATGCTCGCTAACATCGGTCAACACGATCCCATCCTCCATGTCACAAAGGATGCAAAGGGCGATCATCGTTCTGAATGGATATCGATTCGCGCTATCGAGGACCCCTACGTTCAAGAAGTTGCTAAGTTCGTGGTGGTCGAGGTGAACAAGGAAAAGAAGGCAACTTTTCAATATAAGGGTTTGCTACGTTGTTGGGTTAAGGAGGAGATGGGAGGTATCAAATATCGCCTTATTTTGGAGGTAAAAGGAGGTGCTTCCGAAGGTAAATATGAGGCTATTGTTTGGGAGGCTTCTGGTCGTCTCATAATAAGAAAGCTGAAGCTTGTATCTTTTGTGGCTTGTAATCATGGAGTTGAATGA

mRNA sequence

ATGATTTCTACCATGCTCGCTAACATCGGTCAACACGATCCCATCCTCCATGTCACAAAGGATGCAAAGGGCGATCATCGTTCTGAATGGATATCGATTCGCGCTATCGAGGACCCCTACGTTCAAGAAGTTGCTAAGTTCGTGGTGGTCGAGGTGAACAAGGAAAAGAAGGCAACTTTTCAATATAAGGGTTTGCTACGTTGTTGGGTTAAGGAGGAGATGGGAGGTATCAAATATCGCCTTATTTTGGAGGTAAAAGGAGGTGCTTCCGAAGGTAAATATGAGGCTATTGTTTGGGAGGCTTCTGGTCGTCTCATAATAAGAAAGCTGAAGCTTGTATCTTTTGTGGCTTGTAATCATGGAGTTGAATGA

Coding sequence (CDS)

ATGATTTCTACCATGCTCGCTAACATCGGTCAACACGATCCCATCCTCCATGTCACAAAGGATGCAAAGGGCGATCATCGTTCTGAATGGATATCGATTCGCGCTATCGAGGACCCCTACGTTCAAGAAGTTGCTAAGTTCGTGGTGGTCGAGGTGAACAAGGAAAAGAAGGCAACTTTTCAATATAAGGGTTTGCTACGTTGTTGGGTTAAGGAGGAGATGGGAGGTATCAAATATCGCCTTATTTTGGAGGTAAAAGGAGGTGCTTCCGAAGGTAAATATGAGGCTATTGTTTGGGAGGCTTCTGGTCGTCTCATAATAAGAAAGCTGAAGCTTGTATCTTTTGTGGCTTGTAATCATGGAGTTGAATGA

Protein sequence

MISTMLANIGQHDPILHVTKDAKGDHRSEWISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGASEGKYEAIVWEASGRLIIRKLKLVSFVACNHGVE

Homology

[Close]

BLAST of Cp4.1LG15g03650.1 vs. Swiss-Prot
Match: CYT1_ACTDE (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I ++    VQ+VA+F V E NK+     QY+ ++R +  + + G  YRL++  K GA
Sbjct: 32  WRPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYT-QVVAGTNYRLVIAAKDGA 91

Query: 90  SEGKYEAIVWE 101
             G YEA+VW+
Sbjct: 92  VVGNYEAVVWD 101

[Close]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL
Match: A0A0A0K644_CUCSA (Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.7e-46
Identity = 96/123 (78.05%), Postives = 105/123 (85.37%), Query Frame = 1


Query: 1   MISTMLANIGQHDPILHVT-KDAKGDHRSEWISIRAIEDPYVQEVAKFVVVEVNKEKKAT 60
           MIST+LAN+GQHDPILHVT KD KGDH+SEWISIRAIEDPYVQEVAKF + E  KEK A 
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FQYKGLLRCWVKEEMGGIKYRLILEV-KGGASEGKYEAIVWEASGRLIIRKLKLVSFVAC 120
           FQYK LL CW+KEEMGGIKYRL+LEV K    EGKYEA+VWEASGRLIIRKLKL+SF+  
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

Query: 121 NHG 122
            HG
Sbjct: 121 MHG 123

[Close]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL
Match: A0A0B4ZWL9_MORAL (Cysteine proteinase inhibitor OS=Morus alba var. atropurpurea PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.1e-08
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I+ + DP+V+E+A F V E NK+ KA+ + K +++    + + G  YRL+L VK GA
Sbjct: 29  WTPIKDLSDPHVKEIANFAVSEYNKQSKASLKLKSIVK-GETQVVAGTNYRLVLAVKNGA 88

Query: 90  SEGKYEAIVWE 101
           +  +YEA+VWE
Sbjct: 89  TAERYEAVVWE 98

[Close]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL
Match: W9R7F6_9ROSA (Cysteine proteinase inhibitor OS=Morus notabilis GN=L484_004273 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I+ + DP+V+E+A F V E NK+ KA+ + K +++    + + G  YRL++ V  GA
Sbjct: 29  WTPIKDLSDPHVKEIANFAVSEYNKQSKASLKLKSIVK-GETQVVAGTNYRLVVAVTNGA 88

Query: 90  SEGKYEAIVWE 101
           +  +YEA+VWE
Sbjct: 89  AAERYEAVVWE 98

[Close]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL
Match: A0A0D2VC84_GOSRA (Cysteine proteinase inhibitor OS=Gossypium raimondii GN=B456_010G187500 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I+ I+DP+V E+AKF V E NK+ K + +   +++    + + GI Y+L+L+ K G+
Sbjct: 33  WTPIKDIKDPHVMEIAKFAVDEYNKQSKVSLKLDEVVK-GETQVVSGINYKLVLKAKDGS 92

Query: 90  SEGKYEAIVWE 101
           +   YEA+VWE
Sbjct: 93  AVNTYEAVVWE 102

[Close]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL
Match: A0A0A0LTF5_CUCSA (Cysteine proteinase inhibitor OS=Cucumis sativus GN=Csa_1G183580 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 23  KGDHRSEWISIRAIEDPYVQEVAKFVVVEVNKEKKAT-FQYKGLLRCWVKEEMGGIKYRL 82
           KG     W  I  ++DP+V+E+ KF V E NK+ K    ++K ++     + + G  YRL
Sbjct: 22  KGSMLGGWSKIPDLKDPHVEEIGKFAVAEYNKQSKGVAIEFKSVVS-GETQVVAGTNYRL 81

Query: 83  ILEVKGGASEGKYEAIVWE 101
           +++ K G S  KYEAIVWE
Sbjct: 82  LIDAKRGESMSKYEAIVWE 99

[Close]

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr
Match: gi|700188534|gb|KGN43767.1| (Cystatin domain containing protein [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-46
Identity = 96/123 (78.05%), Postives = 105/123 (85.37%), Query Frame = 1


Query: 1   MISTMLANIGQHDPILHVT-KDAKGDHRSEWISIRAIEDPYVQEVAKFVVVEVNKEKKAT 60
           MIST+LAN+GQHDPILHVT KD KGDH+SEWISIRAIEDPYVQEVAKF + E  KEK A 
Sbjct: 1   MISTLLANVGQHDPILHVTSKDTKGDHQSEWISIRAIEDPYVQEVAKFAMREFEKEKMAR 60

Query: 61  FQYKGLLRCWVKEEMGGIKYRLILEV-KGGASEGKYEAIVWEASGRLIIRKLKLVSFVAC 120
           FQYK LL CW+KEEMGGIKYRL+LEV K    EGKYEA+VWEASGRLIIRKLKL+SF+  
Sbjct: 61  FQYKRLLSCWIKEEMGGIKYRLVLEVIKEEKLEGKYEAVVWEASGRLIIRKLKLISFMPS 120

Query: 121 NHG 122
            HG
Sbjct: 121 MHG 123

[Close]

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr
Match: gi|746657137|gb|AJD79055.1| (CPI-4 [Morus alba var. atropurpurea])

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I+ + DP+V+E+A F V E NK+ KA+ + K +++    + + G  YRL+L VK GA
Sbjct: 29  WTPIKDLSDPHVKEIANFAVSEYNKQSKASLKLKSIVK-GETQVVAGTNYRLVLAVKNGA 88

Query: 90  SEGKYEAIVWE 101
           +  +YEA+VWE
Sbjct: 89  TAERYEAVVWE 98

[Close]

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr
Match: gi|703092669|ref|XP_010094696.1| (Cysteine proteinase inhibitor 5 [Morus notabilis])

HSP 1 Score: 62.8 bits (151), Expect = 4.9e-07
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGGIKYRLILEVKGGA 89
           W  I+ + DP+V+E+A F V E NK+ KA+ + K +++    + + G  YRL++ V  GA
Sbjct: 29  WTPIKDLSDPHVKEIANFAVSEYNKQSKASLKLKSIVK-GETQVVAGTNYRLVVAVTNGA 88

Query: 90  SEGKYEAIVWE 101
           +  +YEA+VWE
Sbjct: 89  AAERYEAVVWE 98

[Close]

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr
Match: gi|659127356|ref|XP_008463660.1| (PREDICTED: cysteine proteinase inhibitor 5 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 6.4e-07
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 30  WISIRAIEDPYVQEVAKFVVVEVNKEKKAT-FQYKGLLRCWVKEEMGGIKYRLILEVKGG 89
           W  I  ++DP+V+E+AKF V + N++ K    ++KG+      + + G  YRL+++ K G
Sbjct: 32  WSKISDVKDPHVEEIAKFAVAQYNEQSKGVAIEFKGV-ESGETQVVAGTNYRLVIDAKRG 91

Query: 90  ASEGKYEAIVWE 101
            S GKYEA+VWE
Sbjct: 92  ESIGKYEALVWE 102

[Close]

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr
Match: gi|823138315|ref|XP_012469025.1| (PREDICTED: cysteine proteinase inhibitor 5-like, partial [Gossypium raimondii])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 1


Query: 18  VTKDAKGDHRSE-WISIRAIEDPYVQEVAKFVVVEVNKEKKATFQYKGLLRCWVKEEMGG 77
           +  DA+ D   E W SI+ I+DP+V E+ +F V E N + K + + + +++    + + G
Sbjct: 5   ILSDARKDALIEGWTSIKNIKDPHVTEITEFAVDEHNTQLKGSLKLEEVVK-GETQVISG 64

Query: 78  IKYRLILEVKGGASEGKYEAIVWEASGRLIIRKLKLVSF 116
           I Y+L+L+ K G ++  YEA+VWE   +  ++  KL SF
Sbjct: 65  INYKLVLQAKDGTADNSYEAVVWE---KAWLKFRKLTSF 99

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g03650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1_ACTDE	2.9e-07	38.03	Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1	[more]

BLAST of Cp4.1LG15g03650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K644_CUCSA	3.7e-46	78.05	Cystatin domain containing protein OS=Cucumis sativus GN=Csa_7G066240 PE=4 SV=1	[more]
A0A0B4ZWL9_MORAL	3.1e-08	42.25	Cysteine proteinase inhibitor OS=Morus alba var. atropurpurea PE=2 SV=1	[more]
W9R7F6_9ROSA	3.4e-07	39.44	Cysteine proteinase inhibitor OS=Morus notabilis GN=L484_004273 PE=3 SV=1	[more]
A0A0D2VC84_GOSRA	1.0e-06	39.44	Cysteine proteinase inhibitor OS=Gossypium raimondii GN=B456_010G187500 PE=3 SV=...	[more]
A0A0A0LTF5_CUCSA	1.0e-06	39.24	Cysteine proteinase inhibitor OS=Cucumis sativus GN=Csa_1G183580 PE=3 SV=1	[more]

BLAST of Cp4.1LG15g03650.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g03650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188534\|gb\|KGN43767.1\|	5.4e-46	78.05	Cystatin domain containing protein [Cucumis sativus]	[more]
gi\|746657137\|gb\|AJD79055.1\|	4.4e-08	42.25	CPI-4 [Morus alba var. atropurpurea]	[more]
gi\|703092669\|ref\|XP_010094696.1\|	4.9e-07	39.44	Cysteine proteinase inhibitor 5 [Morus notabilis]	[more]
gi\|659127356\|ref\|XP_008463660.1\|	6.4e-07	40.28	PREDICTED: cysteine proteinase inhibitor 5 [Cucumis melo]	[more]
gi\|823138315\|ref\|XP_012469025.1\|	1.1e-06	34.34	PREDICTED: cysteine proteinase inhibitor 5-like, partial [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR020381	Proteinase inhibitor I25, cystatin, conserved region

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g03650	Cp4.1LG15g03650	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g03650.1:cds:001	Cp4.1LG15g03650.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g03650.1	Cp4.1LG15g03650.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020381	Proteinase inhibitor I25, cystatin, conserved region	PFAM	PF16845	SQAPI	coord: 33..102 score: 3.7
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 34..101 score: 1.
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 28..115 score: 3.4