Cp4.1LG14g01380.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01380.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRibosome biogenesis protein TSR3
LocationCp4.1LG14 : 3674166 .. 3678987 (-)
Sequence length1857
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGCGCCTACTAAACATAAAACCTTGTGTCTTGTTCGTCCGGCGCCGTCGTGTACTAGTTCCGCCGCATCTGTGGACGGCGATACCAAGTCAGGAAAGCCATTCTCAAAAAGGTAAGGGAAAACAAAATATTGAAGCCGCGTAATAATACCTTACTAGAGCCGCGGAGAAAAAGAGAACCCAGAAGCCCCGATTCCCACTTTACTAATCTGCTTCAGAATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGTCGCGGACAATCTTCTCGAGGCCATAAATTTGTTGGGTAACTACATATACACTTACCCTTTTCCCCCCTGATTCGTCTCTTTGTTATTGCTCATTTGCTTTATTTTTGGGGTTTTTCAGAGAGGACGAGTGTTTGCCAATCGACCCAGGTGCCTATTTTGTCTGTGATTTAGTTGTGTTTATAGAAGCCCCATTATGGTGGAGGGGCATTGAATTTAGGTGCTTGATGAGTTCCTTTGTGTTGCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGTGTGTAATGAACCCTTTTCTTAAGCTTACAAAGCTGTTTGTAATCTGAAATTGATGGAGTTTTGCTGTTGATTCAGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAACTCGCACGATTTGGCTTGTTAAAAGAAAGTACCTAATTATCTCCTTTTCTTTTATATTCATATTTTAAGCTATGTTGCTCATACTCTCCACTTCATTAATGATTATACAAAATGTCTTGTTGGATGTATTGGGTTAGTTCTATATGATCTTGCTGGGAATTTTGAAAATATGTTCGCATGTGATGATTGGTATTGATATGANGTGGCCCCTGCATGCACCATATTTTATGTGATATGATTATACAAAATGTCTTGTTGGATGTATTGGGTTAGTTCTATATGATCTTGCTGGGAATTTTGAAAATATGTTCGCATGTGATGATTGGTATTGATATGAATATGATATTTTGGAAACAGGAATGGAAGTCTATAGAAAAATAGGTTGTATTGTGATTAAATGCTGAAGGAAATCTAATGTTAGATGGTTTAGATCATAAAAGTTGCAACTTGCAAAATCAGGGACCAAATGAAATACTAAAAACAAAGGAAAAAAAGTACAGTTTTGCTTTAATTATTTCTAAGTTACTTCATCAAATGAGGTTGTATGGTTTAAAACTATATGAATAATCTGATTCATGCTCGTTTAAGGTTTTAATTCGATTTCTTTGTACATATAAAAAAATTATCTAACTTCTATTGAATTCGTGCAGGATTTGCGTGTTAACAGTGGGTTTGGAGGCATTGTCTTAAGGTACTGTGAACAATTATGTTTCCTAGTGTACTAGTTGTAGCTAGACGTTAGTATATGATAATACTGCCACAAGAAATTGCTTTCCTGAGTGTTGAGGAACTTTGAATTTGTTTACTGTCTGAATGGAGGTACTATTCTATTATTGTTGGGTGTTGTGAAGTCGTCTTTGACATTTGGTGCTATTTTCCAGTAATCTGTTTGTTTTGAATGGCTTTGTGATGGAATACTTTTGAGTGAATATCCGCTCGTGTCTACCAAGGGTGTTGTGCCGTTCCTCAAATTGGCTGGCTTGTAGGGGTGACCTCTAGACCAATCATTTGTTCCGAGGAGGAATCAAGGCTCCATTGGTTGATTGATTGATTAAATTGTGAGATCCCACGTTGGTTGGAGAGGGGAATGAAGTATTCCTTATAAGGGTGTGGAGACCTCTCCTTAGTAGACGTGTTTTAAAATCGTGAGGTTGACGACGATACGTAACGGACCAAAGCGGAGAATATTTGCTAGAGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGTTAGTCACCGGACAGTGTGCCAGTGAGGATGCTGGTCCACAAGGGGGGTGGATTGTGAGATTCCACGTTGCTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACACGTTTTAAGACCGTGAGGCCAACAGCGATACGTAACGAGTCAAAGCGAATAATATTTGCTAGCGGTGGGCTTGAGCTGTTACATGAATGAATGAAACATATATGAAAGGAAAGGATGGGAGACCATGGACCATATAAAGGCTTCCATCATAAGAGCCCAGTGCTTATAAGCAAAAAGGGGAAAATGTAGGAGGTGGCTATGAGATTCTGAGCTCTTGCAGAGGAAGTGTTCTCACTAGAGTAGAGCTATTCGTTAGTGAATGTGTGGTCTATGAACTAGCTAAGTACTTTGCTTTAGCCCTTACTCTGTTACAACCTTTGCCCATTTCATAATGTATTGACTAAATTCTGACTCAAAGGCTTGTGAACTTTTTGCTGGTATTTTGAACCTCTTTAATCTGAATATTTTTGCAGTCCAGTGGGGGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAGAGGCTTAGCCGTTGTGGATTGCTCGTGGGCACGTCTCGGTGATGTTCCATTTGTGAAGTTGCGTTGTGGTGCTCCTCGCCTATGTAAGAGATTTACATTCTGAATATGAAATTTTTGTGTAGTTCTTAACATTACTGTTATATGATTTTTAATGTTTTTCTAAACTACGATGGAGATTTCACTAAGTTTATTGAAGTGAATTTTCCTGGCAAGACTCTATTTGGTTGACTTAGGCAATGACTATAATTATTATATGATGGTTTTTTCTCCTGATTCTGATTTTCACTTTCTGCAAATATTGTAGTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTACGGTCGACCATGCGAGTTATCTTGTGTGGAAGCATTAGCCGCCGCTCTAATCATATGGTAACACGACCTCTATGTCATCTCTTCTCATGTGTTCCTGTTGGTTTCGAGATTCTTCTGAGATTTATGTCAATTACTTATCTCATGTCGTTGTATATCCTTTTGTCATAAATTTGGTGTAATAATCAGCTTACAAAAAAATCTCGTTGTAGATCTACTCATCATCTAAGATTTATAAGGGGTTGTACATCGTTTATTACAATATGCCGGTGAGATCTCACATTGGTTGGAAAATGGACGAAACATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTGAAACCTTGAGGAAGCTTAGAAGGGAAAGTCCAAAAGGACAATATTTACTAGCCGTGGGTCTGAGTTGTTACAAATGGTATCAGAGCCCGACACCGGGCGTTGTTCCAGCGAGGACGCTGGACCCTCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGAGAACGAAACATTCCTTATATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGCCTAGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGATTGCTATAGAATGGTTTTATCAGTCACTTCACTCCGACATACATAACTATGAAGAAGTTTGCTTTATGGTTTCGTTAATATCAACGCTCTTGCTTATCACGTTTCTTTCTCGATGTTTGAACTTTTCATAGCTGGAAATATGATTATCTGTTGGTTTAATTGAGCTAGCTTTCTGTCCATTTTGTTTAACTTTTTCTATTGAACTGAACCAACAGTGGAGAAGGGGAAACAGCAGATTTGTTGCTTGGTAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGGTATGTTTTATCGATTATCTAAGCATACCTAATAGAGCTTGTTTGAAATGACTTTCTAAGTGCTTAAAAACACTCGGAAATACTTTGTTAAGCACTTGAAGTGTACAAACGAGTGGAGTTCAAGGCTTGTAAATTGCTATCATTTGAGCTTTTTTCTATGTCAATGCTTGCTAATTCCTCTTCCTATCACACAGAGAACTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATTTCGGTCCAGAATGCTTGGTTATCACAACAACGACAAGTCCCGAAGGAACCTCGTGTTCTAGAAGGTATTCTTTTGAACTAAGTACATCTGTCTCATGTTTGTTTCGCGCCTTAATTTGAAAAAAAATGTGTGGAGAAATCGTTGGATATAGAAGAGAAAAACGGCACAAGTATACACATTTGCATCTCGTAGTTATGAAGGACATGTAAGTATCTAAATCTACGTCCAATAGTTATGTAGACACAATCGTAGCACTCTTGTTGAATAGATTTTCAAATATGTGTCGGTATAAAAACGATCCGAATTGACAAAAGGCAAGAGCCAACAACCGACACGCTGTTTTTGGTCGTTCTACATTTTAGAAAACCAAACCAACTTGGGCTAAACCAATGGAGGGTAATGGCTTTTCATTTGGAAGTAGAGTCGTTTTCTAGTACTTGTTAGGGTGTAACTCGAACAAATGACGGGTTGTATGTTGTAGGTGCAGAAAAGTCATCTGTGAGCGAAGACGATGAGGGTTCCGACGATTCGGAGGATGGACTTCCACCATTGGAGAAGAACCTAAATCACTTGACCTTGCAGCAAGACAGCGACGAAGAAAGCGAGTAAAACTCGATACCATAGGGACAAAACTTTGATCTAGAGACCAAACACTTTCGACAAAGTCTAGGTTTCTTCTATGTTGCTTTGCCTTTTTTACTTAATAGAAGTACTAGCTCCATTGGAGTTGTGTAATCTTTTTATCTTTTTTTCCTTGTATTTATATCCAAGCGTTTCTAATAAGTAGACCAATTGCATTCGATGTGAGACTCTCCAA

mRNA sequence

TGAGCGCCTACTAAACATAAAACCTTGTGTCTTGTTCGTCCGGCGCCGTCGTGTACTAGTTCCGCCGCATCTGTGGACGGCGATACCAAGTCAGGAAAGCCATTCTCAAAAAGGTAAGGGAAAACAAAATATTGAAGCCGCGTAATAATACCTTACTAGAGCCGCGGAGAAAAAGAGAACCCAGAAGCCCCGATTCCCACTTTACTAATCTGCTTCAGAATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGTCGCGGACAATCTTCTCGAGGCCATAAATTTGTTGGAGAGGACGAGTGTTTGCCAATCGACCCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAACTCGCACGATTTGGCTTGTTAAAAGAAAGTACCTAATTATCTCCTTTTCTTTTATATTCATATTTTAAGCTATGTTGCTCATACTCTCCACTTCATTAATGATTATACAAAATGTCTTGTTGGATGTATTGGGTTAGTTCTATATGATCTTGCTGGGAATTTTGAAAATATGTTCGCATGTGATGATTGGTATTGATATGANGTGGCCCCTGCATGCACCATATTTTATGTGATATGATTATACAAAATGTCTTGTTGGATGTATTGGGTTAGTTCTATATGATCTTGCTGGGAATTTTGAAAATATGTTCGCATGTGATGATTGGTATTGATATGAATATGATATTTTGGAAACAGGAATGGAAGTCTATAGAAAAATAGGTTGTATTGTGATTAAATGCTGAAGGAAATCTAATGTTAGATGGTTTAGATCATAAAAGTTGCAACTTGCAAAATCAGGGACCAAATGAAATACTAAAAACAAAGGAAAAAAAGTACAGTTTTGCTTTAATTATTTCTAAGTTACTTCATCAAATGAGGTTGTATGGTTTAAAACTATATGAATAATCTGATTCATGCTCGTTTAAGGTTTTAATTCGATTTCTTTGTACATATAAAAAAATTATCTAACTTCTATTGAATTCGTGCAGGATTTGCGTGTTAACAGTGGGTTTGGAGGCATTGTCTTAAGTCCAGTGGGGGTGAATTGTGTCTCTAAAGAAGATCATAGTCTTCTTAAACAAAGAGGCTTAGCCGTTGTGGATTGCTCGTGGGCACGTCTCGGTGATGTTCCATTTGTGAAGTTGCGTTGTGGTGCTCCTCGCCTATTACCTTGGCTAGTAGCAGCAAACCCAGTAAATTACGGTCGACCATGCGAGTTATCTTGTGTGGAAGCATTAGCCGCCGCTCTAATCATATGTGGAGAAGGGGAAACAGCAGATTTGTTGCTTGGTAAGTTCAAGTGGGGCCATGCTTTTCTTTCCGTTAATAGAGAACTTCTAAAACAATACTCAGCATGCGAGAATAGTGCTGATATTATTTCGGTCCAGAATGCTTGGTTATCACAACAACGACAAGTCCCGAAGGAACCTCGTGTTCTAGAAGGTGCAGAAAAGTCATCTGTGAGCGAAGACGATGAGGGTTCCGACGATTCGGAGGATGGACTTCCACCATTGGAGAAGAACCTAAATCACTTGACCTTGCAGCAAGACAGCGACGAAGAAAGCGAGTAAAACTCGATACCATAGGGACAAAACTTTGATCTAGAGACCAAACACTTTCGACAAAGTCTAGGTTTCTTCTATGTTGCTTTGCCTTTTTTACTTAATAGAAGTACTAGCTCCATTGGAGTTGTGTAATCTTTTTATCTTTTTTTCCTTGTATTTATATCCAAGCGTTTCTAATAAGTAGACCAATTGCATTCGATGTGAGACTCTCCAA

Coding sequence (CDS)

ATGAGTCACAACAAGCCTAGACGCTTCAAAAATCATCATCCGCGTCGCGGACAATCTTCTCGAGGCCATAAATTTGTTGGAGAGGACGAGTGTTTGCCAATCGACCCAGACAATGAAGAGGAGCTAGCAGTACCAAAAATTCAGCTTGCCATGTGGGATTTTGGGCAGTGTGATGCAAAAAGGTGCACAGGACGCAAACTCGCACGATTTGGCTTGTTAAAAGAAAGTACCTAA

Protein sequence

MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKLARFGLLKEST
Homology
[Close]
BLAST of Cp4.1LG14g01380.1 vs. Swiss-Prot
Match: TSR3_YEAST (Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-08
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 4  NKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCT 63
          NK    KN  P+RG  + GH        + +  DN E++  P ++LAMWDF  CD KRC+
Sbjct: 6  NKMHEPKNGRPQRG--ANGHSSRQNHRRMEMKYDNSEKMKFP-VKLAMWDFDHCDPKRCS 65

Query: 64 GRKLARFGLLK 75
          G+KL R GL+K
Sbjct: 66 GKKLERLGLIK 73

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match: A0A0A0KXU5_CUCSA (Probable ribosome biogenesis protein Csa_4G031030 OS=Cucumis sativus GN=Csa_4G031030 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.3e-32
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
           MSHNK RRFKNHHPRRGQS+RGHKF+GEDECLP+DP NEEE   P I LAMWDFGQCDAK
Sbjct: 94  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 153

Query: 61  RCTGRKLARFGLLKE 76
           RCTGRKLARFGLLKE
Sbjct: 154 RCTGRKLARFGLLKE 168

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match: A0A061DIB2_THECC (Probable ribosome biogenesis protein TCM_001191 OS=Theobroma cacao GN=TCM_001191 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-24
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          M HNKPRRFK HH  RGQSSR H+F  ED+ LP D   EE+  VPKIQLAMWDFGQCDAK
Sbjct: 1  MGHNKPRRFKTHHSHRGQSSRTHQFQREDDSLPPDQPPEEDPNVPKIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFG+LK+
Sbjct: 61 RCTGRKLARFGMLKD 75

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match: V4SR12_9ROSI (Probable ribosome biogenesis protein CICLE_v10027591mg OS=Citrus clementina GN=CICLE_v10027591mg PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-24
Identity = 57/77 (74.03%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          M HNKPRRFKNHH  RGQSSR H+   EDE LP D   E++  VPK+QLAMWDFGQCDAK
Sbjct: 1  MGHNKPRRFKNHHSHRGQSSRCHQPDREDESLPPDQAPEDDPQVPKVQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKEST 78
          RCTGRKLARF LLKE T
Sbjct: 61 RCTGRKLARFNLLKERT 77

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match: A0A0D2QN91_GOSRA (Probable ribosome biogenesis protein B456_003G045400 OS=Gossypium raimondii GN=B456_003G045400 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-23
Identity = 54/71 (76.06%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          M HNKPRRFK H+  RGQSSR H+F  EDE LP D   EEE  VPK+QLAMWDFGQCDAK
Sbjct: 1  MGHNKPRRFKTHNSHRGQSSRNHQFQREDESLPHDQPPEEEPNVPKVQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFG 72
          RCTGRKLARFG
Sbjct: 61 RCTGRKLARFG 71

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match: F6H4N4_VITVI (Probable ribosome biogenesis protein VIT_07s0031g01200 OS=Vitis vinifera GN=VIT_07s0031g01200 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-22
Identity = 54/76 (71.05%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          M HNK RRFK H   RGQSSR  + + E + LP D   EEEL+VPK+QLAMWDFGQCDAK
Sbjct: 1  MGHNKARRFKGHQSHRGQSSRFQEPLREYDSLPTDQAEEEELSVPKVQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKES 77
          RCTGRKL+RFGLLKES
Sbjct: 61 RCTGRKLSRFGLLKES 76

[Close]
BLAST of Cp4.1LG14g01380.1 vs. TAIR10
Match: AT5G10070.2 (AT5G10070.2 RNase L inhibitor protein-related)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-19
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 10 KNHHPRRGQSSRGH--KFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAKRCTGRKL 69
          K++  + G SSRG       EDE LP+D + E+E  VPK+QLAMWDFGQCDAKRCTGRKL
Sbjct: 5  KHNRSKGGNSSRGRTDNLAREDESLPLDQEPEDEAPVPKVQLAMWDFGQCDAKRCTGRKL 64

Query: 70 ARFGLLKE 76
          ARF LLKE
Sbjct: 65 ARFNLLKE 72

[Close]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match: gi|700198074|gb|KGN53232.1| (hypothetical protein Csa_4G031030 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-31
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1   MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
           MSHNK RRFKNHHPRRGQS+RGHKF+GEDECLP+DP NEEE   P I LAMWDFGQCDAK
Sbjct: 94  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 153

Query: 61  RCTGRKLARFGLLKE 76
           RCTGRKLARFGLLKE
Sbjct: 154 RCTGRKLARFGLLKE 168

[Close]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match: gi|659107630|ref|XP_008453773.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+GEDE LP+DP NEEE   P IQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match: gi|659107628|ref|XP_008453772.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          MSHNKPRRFKNHHPRRGQS+RGHKF+GEDE LP+DP NEEE   P IQLAMWDFGQCDAK
Sbjct: 1  MSHNKPRRFKNHHPRRGQSTRGHKFIGEDEFLPVDPANEEEPTRPNIQLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match: gi|778690471|ref|XP_011653127.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          MSHNK RRFKNHHPRRGQS+RGHKF+GEDECLP+DP NEEE   P I LAMWDFGQCDAK
Sbjct: 1  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

[Close]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match: gi|778690469|ref|XP_011653126.1| (PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 

Query: 1  MSHNKPRRFKNHHPRRGQSSRGHKFVGEDECLPIDPDNEEELAVPKIQLAMWDFGQCDAK 60
          MSHNK RRFKNHHPRRGQS+RGHKF+GEDECLP+DP NEEE   P I LAMWDFGQCDAK
Sbjct: 1  MSHNKTRRFKNHHPRRGQSTRGHKFIGEDECLPVDPANEEEPTRPNIHLAMWDFGQCDAK 60

Query: 61 RCTGRKLARFGLLKE 76
          RCTGRKLARFGLLK+
Sbjct: 61 RCTGRKLARFGLLKD 75

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01380.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TSR3_YEAST2.1e-0843.66Ribosome biogenesis protein TSR3 OS=Saccharomyces cerevisiae (strain ATCC 204508... [more]
BLAST of Cp4.1LG14g01380.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXU5_CUCSA7.3e-3286.67Probable ribosome biogenesis protein Csa_4G031030 OS=Cucumis sativus GN=Csa_4G03... [more]
A0A061DIB2_THECC1.9e-2474.67Probable ribosome biogenesis protein TCM_001191 OS=Theobroma cacao GN=TCM_001191... [more]
V4SR12_9ROSI5.6e-2474.03Probable ribosome biogenesis protein CICLE_v10027591mg OS=Citrus clementina GN=C... [more]
A0A0D2QN91_GOSRA8.1e-2376.06Probable ribosome biogenesis protein B456_003G045400 OS=Gossypium raimondii GN=B... [more]
F6H4N4_VITVI4.0e-2271.05Probable ribosome biogenesis protein VIT_07s0031g01200 OS=Vitis vinifera GN=VIT_... [more]
BLAST of Cp4.1LG14g01380.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10070.22.8e-1964.71 RNase L inhibitor protein-related[more]
BLAST of Cp4.1LG14g01380.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198074|gb|KGN53232.1|1.0e-3186.67hypothetical protein Csa_4G031030 [Cucumis sativus][more]
gi|659107630|ref|XP_008453773.1|1.4e-3186.67PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis melo][more]
gi|659107628|ref|XP_008453772.1|1.4e-3186.67PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis melo][more]
gi|778690471|ref|XP_011653127.1|2.3e-3185.33PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X2 [Cucumis sativus][more]
gi|778690469|ref|XP_011653126.1|2.3e-3185.33PREDICTED: ribosome biogenesis protein TSR3 homolog isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR022968Rbsm_biogenesis
IPR007209RNaseL-inhib_metal-bd_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG14g01380Cp4.1LG14g01380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG14g01380.1Cp4.1LG14g01380.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG14g01380.1:five_prime_utr:001Cp4.1LG14g01380.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG14g01380.1:cds:001Cp4.1LG14g01380.1:cds:001CDS
Cp4.1LG14g01380.1:cds:002Cp4.1LG14g01380.1:cds:002CDS
Cp4.1LG14g01380.1:cds:003Cp4.1LG14g01380.1:cds:003CDS
Cp4.1LG14g01380.1:cds:004Cp4.1LG14g01380.1:cds:004CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG14g01380.1:three_prime_utr:001Cp4.1LG14g01380.1:three_prime_utr:001three_prime_UTR
Cp4.1LG14g01380.1:three_prime_utr:002Cp4.1LG14g01380.1:three_prime_utr:002three_prime_UTR
Cp4.1LG14g01380.1:three_prime_utr:003Cp4.1LG14g01380.1:three_prime_utr:003three_prime_UTR
Cp4.1LG14g01380.1:three_prime_utr:004Cp4.1LG14g01380.1:three_prime_utr:004three_prime_UTR
Cp4.1LG14g01380.1:three_prime_utr:005Cp4.1LG14g01380.1:three_prime_utr:005three_prime_UTR
Cp4.1LG14g01380.1:three_prime_utr:006Cp4.1LG14g01380.1:three_prime_utr:006three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007209RNase L inhibitor RLI, possible metal-binding domainPFAMPF04068RLIcoord: 48..74
score: 3.1
IPR022968Ribosome biogenesis proteinPANTHERPTHR20426FAMILY NOT NAMEDcoord: 32..75
score: 5.7
NoneNo IPR availablePANTHERPTHR20426:SF0RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOGcoord: 32..75
score: 5.7