Cp4.1LG13g07020.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g07020.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger family protein
Location	Cp4.1LG13 : 4345738 .. 4348440 (+)
Sequence length	991

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTACTCATGCATTAACCCTCTCTGCACTTCACCTTCCTTTCTCTCTCTCTCTGTGTTCTTCCATTTCCATGGCGGCCTTGGAGGAGCATTACCAATCCAAACAAACCAACAATCCCACTACTCGTTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCAGCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTCGAGGATGGACCCGGCTTCGATGATGGACCGGGTTTGGATTTGCATCTCAGCCTCGCACCGTCGGCGCCATGAAAATCGAAGCCCCCAACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCATATCTTAACATAACATATCATAAACATATCAATTCACCGAATACAACGTAACAATCACATCTCATAACACAGACATATTATTTCATAATAATTTGCATATACGGGCATATGACACGTGCAAAGCTACGAGCACGTGTCTTCATATAGCACACAATTATAACCAAACAATGGTAGGGCCACTACATGGTTGGCCTTAGCCGGCGTTTTCCTTAATTCAAGTATGTTCGCTCTCGTTCCTCGAAATCACTCCAATTATCGCCGATCGTCGTTTCCTATTAAAATATCGATCCCGTTTCGTTAGTAATTTAAGAATTCCTAACTCAATCGAATTTAAATTGAGAAATTTACCCTTATACTGACCTTATTTGCCTTAAATAAGGTCAAATTAAGCTTTGGGATGGTCGGAACGATGGGGAATTGGCTAATTTTTCCTTACCGAGTCGTTTAAGTTGAGTCGAGCCATTTAAGCAGAGCTGACTGAACCGTTTAAGCCGACTGAGACTTTTGGATAAGTATATAAGGTATGTTATGGTTACGAAAATACCCCTAGGATTGATGGATGTTATCTCCCCCTAGAGCTAGCATGAGTGTTTAGATTACGTTTTTTGTGCTTTAGGTGATCCATAAGAATATCTCCCTAACAAAACACGAATTAGTAAAGCCCATGGATACCTATGGAGTCATTTTATACTCACCAATTTCCCATTTTTCTTAGGTGATCGTAGGCTGCAAGTCGAGGTAAGGAAGCGTTCAAGAGCTACGTGGTCATTGAGAAGGTCATTCTGAAGCATCAATCCGTCTATCTATTGGACATTGTATTCCAAATCCTTTATCTCATTTGTCATAAACTTGAACAACATCAACTTGTATTTGACCTGGTTGTATTTTAAAATTGTGGTATTGTTGTGTCGCCTTTAATTAGATTTAAATTTTACCATATTTTTTTTAATCTTTTATTTTATTTGCTTTAGTCTTTGTTTTCTTAGTTATAGTCCCATATTCGAAACCTCGAAAATCGAGTCGTGACATCTATACTTGAGCATATCTTTGAATATATCTTTCTGAATTAGCTTTAGCATATATGCTTAGCAATTTAGCATATATGCTTAGCAATCCTGATTATTGAAGTGTCTGTAAACTAAAGTTTCTACTCTTCCATAACTCAACATTGTGTAATAGATTACACAATTCTACGCAATCTAATCTGTATATCAGAGTGACCAATAATTAATAATTAAAGAGTTTAATTAATTAATTTTTTATCATTGAAATTTATTATATTAGAGCGATGAATAATTAGAAATTAAATAAAAAATATAGAAATGAAATAAAATTGAAATTAAAATTACAGACATTATTGAAACATATTCTAATAATTTTGCAAACACCACTTTTATTGGTCTTCTATTTCTATATTATATATGTTTTCTTTTTAAAAAAATTGTGTATATATAGCTCTACTCATGCATTAACCCTCTCTGCACTTCACCTTCCTTTCTCTCTCTCTCTGTGTTCTTCCATTTCCATGGCGGCCTTGGAGGAGCATTACCAATCCAAACAAACCAACAATCCCACTACTCGTTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCG

mRNA sequence

CTCTACTCATGCATTAACCCTCTCTGCACTTCACCTTCCTTTCTCTCTCTCTCTGTGTTCTTCCATTTCCATGGCGGCCTTGGAGGAGCATTACCAATCCAAACAAACCAACAATCCCACTACTCGTTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCAGCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTCGAGGATGGACCCGGCTTCGATGATGGACCGGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCG

Coding sequence (CDS)

ATGGCGGCCTTGGAGGAGCATTACCAATCCAAACAAACCAACAATCCCACTACTCGTTTGAAGCTCTTTGGATTTGACGTCCAAGAAGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCGCCACCGCCAGCCTTCTTTTCAACCGGGTCTCGGTCGGCTCACGGGATAGTGGATGGCCCGTCGCTGAGCCGGTTCTCCACCGTCGAGGATGGACCCGGCTTCGATGATGGACCGGATCTTGAAGACGATTCCACCCCTACTCCCTCTGCCTCCTCCGACTCCGGCGCCGCTCCCTCCTCCGGCGACCGTAAGTATGAGTGTCAGTACTGTTACAGAGAGTTCGCCAACACCCAAGCCCTCGGCGGCCACCAAAATGCCCACAAGAAAGAGCGCCAGCAGCACAAACGCGCCCAATTACAAGCCTCCCGAAACGCCACCGTTTTTAGAAACCCCATCGTTTCTGCCTTTGCTCCACCGCCTCACCTCCTCCCCTCTGCCGTCCTCACCTCATCATCTTCCTGGCCGCCGGTATATATGCCTCAGGCCCCACCCCAATTCCAGGTCTCCCACGGCTGCGTCTTCACCCCACCGCCG

Protein sequence

MAALEEHYQSKQTNNPTTRLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPAFFSTGSRSAHGIVDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPP

Homology

[Close]

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot
Match: ZFP6_ARATH (Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.7e-19
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 17  TTRLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQN 76
           T+ LKLFG ++   LE  S    S+    G+   S  RKYECQYC REFAN+QALGGHQN
Sbjct: 5   TSSLKLFGINL---LETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQN 64

Query: 77  AHKKERQQHKRAQLQASR------NATVFRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYM 135
           AHKKERQ  KRAQ+ A+R      N     NP++SAFAP PHLL       S   PP +M
Sbjct: 65  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLL-------SQPHPPPHM 118

[Close]

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot
Match: ZFP5_ARATH (Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-12
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 9   QSKQTNNPTTRLKLFGFD-VQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFAN 68
           +S   ++    +KLFGF+ +      + T   S SS +     +  +++ECQYC +EFAN
Sbjct: 12  ESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFAN 71

Query: 69  TQALGGHQNAHKKERQQHKRAQLQASRNA-----TVFRNPIVSAF 108
           +QALGGHQNAHKKER + KR QLQA R +     T  + PI ++F
Sbjct: 72  SQALGGHQNAHKKERLKKKRLQLQARRASIGYYLTNHQQPITTSF 116

[Close]

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot
Match: GIS2_ARATH (Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-08
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 20  LKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHK 79
           ++LFGF+     E+  +      ++      + +++++C YC+R F  +QALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 80  KERQQHKRAQLQASRNATVF 100
           +ERQQ KR  L +  NA  F
Sbjct: 79  RERQQTKRFNLHS--NAAAF 96

[Close]

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot
Match: GIS_ARATH (Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.5e-07
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 28  QEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKR 87
           +E+ E+D T   S  ++S     S +R++EC YC+R F  +QALGGHQNAHK+ERQ  KR
Sbjct: 67  EEEEEEDQTGDNSTDNNS----ISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot
Match: ZFP8_ARATH (Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.2e-07
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 50  SSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKRAQL 91
           ++ +R++EC YC+R F  +QALGGHQNAHK+ERQ  KR  +
Sbjct: 89  NNNNRRFECHYCFRNFPTSQALGGHQNAHKRERQHAKRGSM 129

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL
Match: A0A0A0KRQ5_CUCSA (Multicellular trichome development C2H2 zinc finger transcription factor OS=Cucumis sativus GN=Gl-3 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.0e-73
Identity = 160/216 (74.07%), Postives = 175/216 (81.02%), Query Frame = 1


Query: 1   MAALEEHYQSKQTNN--PTTRLKLFGFDVQEDLE-DDSTPTPSASSDSGAA-PSSGDRKY 60
           MAALE HYQ+KQ NN   TTRLKLFGFDVQEDL+ DDSTPT   SSDSGAA PSSGDRKY
Sbjct: 1   MAALENHYQTKQNNNNPATTRLKLFGFDVQEDLDQDDSTPT---SSDSGAAVPSSGDRKY 60

Query: 61  ECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPS 120
           ECQYCYREFAN+QALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLPS
Sbjct: 61  ECQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLPS 120

Query: 121 AVLTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPAFFSTGSRSAHG 180
           A +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+HG
Sbjct: 121 AAVTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSHG 180

Query: 181 IVDGP-SLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
           +VD P SLSRFS V+ G  FDDGP L+   +  P+A
Sbjct: 181 MVDAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAA 212

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL
Match: A0A068TWM2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032659001 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.1e-45
Identity = 127/228 (55.70%), Postives = 142/228 (62.28%), Query Frame = 1


Query: 1   MAALEEHYQSKQTNNPTTRLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQY 60
           MA LE  YQSK +NN   RLKLFGF+V ++ E DST TPS S DSG  P+S  RKYECQY
Sbjct: 1   MAELE--YQSKPSNNG--RLKLFGFNVTDEEEVDSTKTPSGSPDSGGFPASDGRKYECQY 60

Query: 61  CYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLP--- 120
           C REFAN+QALGGHQNAHKKERQQ KRAQ+QASRNA V   RNPIVSAFAPPPHLL    
Sbjct: 61  CCREFANSQALGGHQNAHKKERQQLKRAQMQASRNAAVSYMRNPIVSAFAPPPHLLAPAG 120

Query: 121 ----SAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPAFFSTGSRSAHGIV----- 180
                A   +S SW  VY+P+A P F VSHGCVF   P        GS S  G V     
Sbjct: 121 SVVVPAAAPASPSW--VYVPRAAPPFHVSHGCVF---PASTTGRGVGSASYAGSVGDSSL 180

Query: 181 ---------------DGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
                          DGPSLSRFS  +DGPGFD+   L+   +  P+A
Sbjct: 181 TSVGPQQVKAHNGRHDGPSLSRFSRADDGPGFDEAFGLDLHLSLAPAA 219

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL
Match: A5BMV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-44
Identity = 116/220 (52.73%), Postives = 140/220 (63.64%), Query Frame = 1


Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +SG  P++GDRKYECQYC R
Sbjct: 3   EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 62

Query: 65  EFANTQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFAN+QALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 63  EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 122

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPA--------------FFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF       A                S   
Sbjct: 123 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 182

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
             AHG VD PSLSRFS  + GP FDD   L+   +  P+A
Sbjct: 183 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAA 220

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL
Match: A0A161Y2Z5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023643 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 116/217 (53.46%), Postives = 137/217 (63.13%), Query Frame = 1


Query: 5   EEHYQSKQTNNPTTRLKLFGFDVQEDLEDD----STPTPSASSDSGAAPSSGDRKYECQY 64
           E  ++  + NN    LKLFGF+V E  EDD    ST TPSASS+SG  P++  RKYECQY
Sbjct: 3   EVQFEQSEQNNTNRHLKLFGFNVTELEEDDEADSSTKTPSASSESGGFPTTDGRKYECQY 62

Query: 65  CYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLPSA- 124
           C REFAN+QALGGHQNAHKKERQQ KRAQ+QA+RNA V   RNPI+SAF+PP HLL  A 
Sbjct: 63  CCREFANSQALGGHQNAHKKERQQLKRAQMQATRNAAVSYMRNPIISAFSPPHHLLSQAG 122

Query: 125 --VLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPAF----------FSTGSRSAHGI 184
             +L SS SW  VY+P+A   F+VSHGCVF       A            S G +     
Sbjct: 123 PMMLPSSPSW--VYVPRAAAPFEVSHGCVFPSSRGAGALQYASGAGDQSSSVGPQQVRAC 182

Query: 185 VDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSASSD 203
            DGPSLSRFS  + GP FDD   L+   +  PS+S D
Sbjct: 183 HDGPSLSRFSRADGGPSFDDAFGLDLHLSLAPSSSLD 217

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL
Match: W9RHN4_9ROSA (Zinc finger protein 6 OS=Morus notabilis GN=L484_015446 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.1e-41
Identity = 123/238 (51.68%), Postives = 136/238 (57.14%), Query Frame = 1


Query: 13  TNNP-TTRLKLFGFDVQED-----LEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFA 72
           TNNP TTRLKLFGF VQED     + D +  TPS S +SG    +GDRKYECQYC REFA
Sbjct: 20  TNNPSTTRLKLFGFSVQEDDDQPTVVDSAKTTPSGSPESGGFAGAGDRKYECQYCCREFA 79

Query: 73  NTQALGGHQNAHKKERQQHKRAQLQASRNATVF--RNPIVSAFAPPPHLLPSA------- 132
           N+QALGGHQNAHKKERQQ KRAQLQASRNA V   RNPI+SAFAPPPHLL  A       
Sbjct: 80  NSQALGGHQNAHKKERQQLKRAQLQASRNAAVSYARNPIISAFAPPPHLLAPAGSVVVPA 139

Query: 133 VLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPAFFSTGSRS---------------- 192
              +S SW  VY+P+A P F VSHGCVF PP         G RS                
Sbjct: 140 AAPASPSW--VYVPRAAPPFHVSHGCVF-PPASAGVSGGGGGRSGGAGAGGFSYSGNVGD 199

Query: 193 -------------------AHG-IVDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
                              AH  +VDGPSLSRFS    GP FDD   L+   +  P+A
Sbjct: 200 YNHNHHSALTMGSQVQQGRAHSRVVDGPSLSRFSKGNGGPSFDDSLGLDLHLSLAPAA 254

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10
Match: AT1G68360.1 (AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 9.9e-31
Identity = 103/236 (43.64%), Postives = 122/236 (51.69%), Query Frame = 1


Query: 5   EEHYQSKQTNNPTTRLKLFGFDV--QEDLEDDSTPT------------PSASS------- 64
           E  + SK T   T+RLKLFGF V  +ED  D S  T            P+ SS       
Sbjct: 3   ELDFSSKTT---TSRLKLFGFSVDGEEDFSDQSVKTNLSSVSPERGEFPAGSSGRSGGGV 62

Query: 65  -DSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATV---- 124
              G     G+RKYECQYC REF N+QALGGHQNAHKKERQQ KRAQLQA+RNA      
Sbjct: 63  RSRGGGGGGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAANFSN 122

Query: 125 -------FRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYMPQ-APPQFQVSHGCV------ 184
                   RNPIVSAFAPPPHLL S+ +      P +Y+P+ +P Q  VSHGCV      
Sbjct: 123 AGSASQFLRNPIVSAFAPPPHLLSSSAVPQPMGGPWMYLPRVSPSQLHVSHGCVIQDGSG 182

Query: 185 --------FTPPPPPPAFFSTGSRSAHGIVDG--PSLSRFSTVEDGPGFDDGPDLE 191
                   +        F   G++  H    G  PS++ FS  E G  FDDG  L+
Sbjct: 183 GAGAGGFSYEYGARDSGFGVVGAQMRHVQAHGPRPSVNGFSR-EVGTTFDDGLGLD 234

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10
Match: AT1G67030.1 (AT1G67030.1 zinc finger protein 6)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-20
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 17  TTRLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQN 76
           T+ LKLFG ++   LE  S    S+    G+   S  RKYECQYC REFAN+QALGGHQN
Sbjct: 5   TSSLKLFGINL---LETTSVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQN 64

Query: 77  AHKKERQQHKRAQLQASR------NATVFRNPIVSAFAPPPHLLPSAVLTSSSSWPPVYM 135
           AHKKERQ  KRAQ+ A+R      N     NP++SAFAP PHLL       S   PP +M
Sbjct: 65  AHKKERQLLKRAQMLATRGLPRHHNFHPHTNPLLSAFAPLPHLL-------SQPHPPPHM 118

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10
Match: AT1G10480.1 (AT1G10480.1 zinc finger protein 5)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-13
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 9   QSKQTNNPTTRLKLFGFD-VQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFAN 68
           +S   ++    +KLFGF+ +      + T   S SS +     +  +++ECQYC +EFAN
Sbjct: 12  ESSSGSSSDKTIKLFGFELISGSRTPEITTAESVSSSTNTTSLTVMKRHECQYCGKEFAN 71

Query: 69  TQALGGHQNAHKKERQQHKRAQLQASRNA-----TVFRNPIVSAF 108
           +QALGGHQNAHKKER + KR QLQA R +     T  + PI ++F
Sbjct: 72  SQALGGHQNAHKKERLKKKRLQLQARRASIGYYLTNHQQPITTSF 116

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10
Match: AT5G06650.1 (AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-10
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 20  LKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHK 79
           ++LFGF+     E+  +      ++      + +++++C YC+R F  +QALGGHQNAHK
Sbjct: 19  IRLFGFEFGASHEESESKDNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHK 78

Query: 80  KERQQHKRAQLQASRNATVF 100
           +ERQQ KR  L +  NA  F
Sbjct: 79  RERQQTKRFNLHS--NAAAF 96

[Close]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10
Match: AT3G58070.1 (AT3G58070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.1e-08
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 28  QEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYREFANTQALGGHQNAHKKERQQHKR 87
           +E+ E+D T   S  ++S     S +R++EC YC+R F  +QALGGHQNAHK+ERQ  KR
Sbjct: 67  EEEEEEDQTGDNSTDNNS----ISHNRRFECHYCFRNFPTSQALGGHQNAHKRERQLAKR 122

[Close]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr
Match: gi|821595291|ref|NP_001295848.1| (zinc finger protein 6-like [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 1.3e-72
Identity = 160/216 (74.07%), Postives = 175/216 (81.02%), Query Frame = 1


Query: 1   MAALEEHYQSKQTNN--PTTRLKLFGFDVQEDLE-DDSTPTPSASSDSGAA-PSSGDRKY 60
           MAALE HYQ+KQ NN   TTRLKLFGFDVQEDL+ DDSTPT   SSDSGAA PSSGDRKY
Sbjct: 1   MAALENHYQTKQNNNNPATTRLKLFGFDVQEDLDQDDSTPT---SSDSGAAVPSSGDRKY 60

Query: 61  ECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLPS 120
           ECQYCYREFAN+QALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLPS
Sbjct: 61  ECQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLPS 120

Query: 121 AVLTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPAFFSTGSRSAHG 180
           A +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+HG
Sbjct: 121 AAVTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSHG 180

Query: 181 IVDGP-SLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
           +VD P SLSRFS V+ G  FDDGP L+   +  P+A
Sbjct: 181 MVDAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAA 212

[Close]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr
Match: gi|659072978|ref|XP_008467196.1| (PREDICTED: zinc finger protein 6-like [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 1.7e-72
Identity = 160/217 (73.73%), Postives = 175/217 (80.65%), Query Frame = 1


Query: 1   MAALEEHYQSKQTNN---PTTRLKLFGFDVQEDLE-DDSTPTPSASSDSGAA-PSSGDRK 60
           MAALE HYQ+KQ NN    TTRLKLFGFDVQEDL+ DDSTPT   SSDSGAA PSSGDRK
Sbjct: 1   MAALENHYQTKQNNNNNPATTRLKLFGFDVQEDLDQDDSTPT---SSDSGAAVPSSGDRK 60

Query: 61  YECQYCYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATVFRNPIVSAFAPPPHLLP 120
           YECQYCYREFAN+QALGGHQNAHKKERQQ KRAQLQASRNA VFRNPIV+AFAPPPHLLP
Sbjct: 61  YECQYCYREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVFRNPIVAAFAPPPHLLP 120

Query: 121 SAVLTSSSSWPPVYMPQAPPQFQVSHGCVFT------------PPPPPPAFFSTGSRSAH 180
           SA +T+SSSW PVY+P+APPQFQVSHGCVFT            PPP PP FF+ GSRS+H
Sbjct: 121 SAAVTASSSW-PVYIPRAPPQFQVSHGCVFTPSSSYGGGGDAPPPPSPPDFFTMGSRSSH 180

Query: 181 GIVDGP-SLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
           G+VD P SLSRFS V+ G  FDDGP L+   +  P+A
Sbjct: 181 GMVDAPMSLSRFSKVDGGTAFDDGPGLDLHLSLAPAA 213

[Close]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr
Match: gi|661896068|emb|CDP00646.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 127/228 (55.70%), Postives = 142/228 (62.28%), Query Frame = 1


Query: 1   MAALEEHYQSKQTNNPTTRLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQY 60
           MA LE  YQSK +NN   RLKLFGF+V ++ E DST TPS S DSG  P+S  RKYECQY
Sbjct: 1   MAELE--YQSKPSNNG--RLKLFGFNVTDEEEVDSTKTPSGSPDSGGFPASDGRKYECQY 60

Query: 61  CYREFANTQALGGHQNAHKKERQQHKRAQLQASRNATV--FRNPIVSAFAPPPHLLP--- 120
           C REFAN+QALGGHQNAHKKERQQ KRAQ+QASRNA V   RNPIVSAFAPPPHLL    
Sbjct: 61  CCREFANSQALGGHQNAHKKERQQLKRAQMQASRNAAVSYMRNPIVSAFAPPPHLLAPAG 120

Query: 121 ----SAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPAFFSTGSRSAHGIV----- 180
                A   +S SW  VY+P+A P F VSHGCVF   P        GS S  G V     
Sbjct: 121 SVVVPAAAPASPSW--VYVPRAAPPFHVSHGCVF---PASTTGRGVGSASYAGSVGDSSL 180

Query: 181 ---------------DGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
                          DGPSLSRFS  +DGPGFD+   L+   +  P+A
Sbjct: 181 TSVGPQQVKAHNGRHDGPSLSRFSRADDGPGFDEAFGLDLHLSLAPAA 219

[Close]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr
Match: gi|731370284|ref|XP_002283623.2| (PREDICTED: zinc finger protein 6 [Vitis vinifera])

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 116/220 (52.73%), Postives = 140/220 (63.64%), Query Frame = 1


Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +SG  P++GDRKYECQYC R
Sbjct: 42  EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 101

Query: 65  EFANTQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFAN+QALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 102 EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 161

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPA--------------FFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF       A                S   
Sbjct: 162 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 221

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
             AHG VD PSLSRFS  + GP FDD   L+   +  P+A
Sbjct: 222 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAA 259

[Close]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr
Match: gi|147769067|emb|CAN72502.1| (hypothetical protein VITISV_027276 [Vitis vinifera])

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 116/220 (52.73%), Postives = 140/220 (63.64%), Query Frame = 1


Query: 5   EEHYQSKQTNNPTT-RLKLFGFDVQEDLEDDSTPTPSASSDSGAAPSSGDRKYECQYCYR 64
           E  YQ+K T+ PT  RLK+FGF+V ED + +S+ TPS S +SG  P++GDRKYECQYC R
Sbjct: 3   EIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCR 62

Query: 65  EFANTQALGGHQNAHKKERQQHKRAQLQASRNA--TVFRNPIVSAFAPPPHLL------- 124
           EFAN+QALGGHQNAHKKERQQ KRAQ+QA+RNA  +  RNP++SAFAPPPHLL       
Sbjct: 63  EFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVV 122

Query: 125 -PSAVLTSSSSWPPVYMPQAPPQFQVSHGCVFTPPPPPPA--------------FFSTGS 184
            P+     S+SW  VY+P+ PP F VSHGCVF       A                S   
Sbjct: 123 VPAGAAPQSASW--VYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQ 182

Query: 185 RSAHGIVDGPSLSRFSTVEDGPGFDDGPDLEDDSTPTPSA 200
             AHG VD PSLSRFS  + GP FDD   L+   +  P+A
Sbjct: 183 SRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAA 220

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g07020.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP6_ARATH	3.7e-19	50.81	Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1	[more]
ZFP5_ARATH	7.4e-12	41.90	Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1	[more]
GIS2_ARATH	1.7e-08	38.75	Zinc finger protein GIS2 OS=Arabidopsis thaliana GN=GIS2 PE=2 SV=1	[more]
GIS_ARATH	5.5e-07	50.00	Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1	[more]
ZFP8_ARATH	7.2e-07	56.10	Zinc finger protein 8 OS=Arabidopsis thaliana GN=ZFP8 PE=2 SV=1	[more]

BLAST of Cp4.1LG13g07020.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRQ5_CUCSA	9.0e-73	74.07	Multicellular trichome development C2H2 zinc finger transcription factor OS=Cucu...	[more]
A0A068TWM2_COFCA	2.1e-45	55.70	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032659001 PE=4 SV=1	[more]
A5BMV3_VITVI	2.3e-44	52.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03780 PE=4 SV=...	[more]
A0A161Y2Z5_DAUCA	1.3e-42	53.46	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023643 PE=4 SV=1	[more]
W9RHN4_9ROSA	3.1e-41	51.68	Zinc finger protein 6 OS=Morus notabilis GN=L484_015446 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g07020.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68360.1	9.9e-31	43.64	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G67030.1	2.1e-20	50.81	zinc finger protein 6	[more]
AT1G10480.1	4.2e-13	41.90	zinc finger protein 5	[more]
AT5G06650.1	9.6e-10	38.75	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G58070.1	3.1e-08	50.00	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Cp4.1LG13g07020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|821595291\|ref\|NP_001295848.1\|	1.3e-72	74.07	zinc finger protein 6-like [Cucumis sativus]	[more]
gi\|659072978\|ref\|XP_008467196.1\|	1.7e-72	73.73	PREDICTED: zinc finger protein 6-like [Cucumis melo]	[more]
gi\|661896068\|emb\|CDP00646.1\|	3.0e-45	55.70	unnamed protein product [Coffea canephora]	[more]
gi\|731370284\|ref\|XP_002283623.2\|	3.3e-44	52.73	PREDICTED: zinc finger protein 6 [Vitis vinifera]	[more]
gi\|147769067\|emb\|CAN72502.1\|	3.3e-44	52.73	hypothetical protein VITISV_027276 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015880	Zinc finger, C2H2-like
IPR013087	Znf_C2H2_type
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG13g07020	Cp4.1LG13g07020	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07020.1:five_prime_utr:001	Cp4.1LG13g07020.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07020.1:cds:002	Cp4.1LG13g07020.1:cds:002	CDS
Cp4.1LG13g07020.1:cds:001	Cp4.1LG13g07020.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG13g07020.1	Cp4.1LG13g07020.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 214..238 score: 8.7E-6coord: 56..80 score: 8.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 216..236 score: -coord: 58..78 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 56..83 score: 11.593coord: 214..241 score: 11
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 209..240 score: 1.7E-4coord: 51..82 score: 1.
IPR015880	Zinc finger, C2H2-like	SMART	SM00355	c2h2final6	coord: 56..78 score: 3.1coord: 214..236 score:
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 209..236 score: 1.47E-7coord: 54..78 score: 1.4