Cp4.1LG12g05800.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCATACGACTCCCCAAGGAACTTGAGAACTGAAAGATGGAAGACGAGCTCAACGGCGTCGTTCCATGTTCTTCCCTCGCCGTCGAATCCACCATTCGCGTCGGAACGGTGAACTTCACGAACAATTTCTTGAACTATGATTCGTTTTCTGTAACTTCTCCATCTGAATCTCTTTCCCCTGCTCATGTTCAGGCCGGCGCTCTATGGGGCTTGTGTATGGGTCCGTACAATTCTCGTAAAAATGGTAATCTGAAGCACAAATTTCGACAATATATTTTATTCCTTTGATTCTTATTGCAATTTCTCTTCTTCATTTCATTCGTTTTCTCTCTTACAGGCCTCAGTGGCGTCGACCATGCTGCTTTCGTGGTATCATATACTTGCTATTTTGTTTTGATTTCCGATTATTTGGATGAGATGGTAGCATTGTGGCGTTTGTCCGATTTGAAAGTGTCTTTGTGGTCTATTTTTCAGGCGAAGTCTGTTGGAAAGAACGGCTTTCAATGTGGTAATGGTTGATTGTCTTAGCGTTTTGGCCTTTACAGATTGTTGAGCTGTGTTTGTGGCTGATTCTTTTTTGCTTGGTTTTGTTTGTTAGACGAACACGACTCTCCACAATCGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGTTTCCCCAAAATGCCTCGTACCAATGGAGAGAGTATTCTTTGTTTATAAACCCATGATCATTCGCTAAATTAGTCGACGTGGGACTTCCATCATCCAACATTGTTCTGGTCAAAGAAGTAGCTAAAGATATTGGGTTATAGGACTTGTTGCTGTAACTTTTACTCTGACACTCTGTGGGATTCAAAGATACAGAAGGAAGAATGATTGGGTTAGTTACACTCATGAAATGATTCGTTTTCACCATTTTCCTTTGTTTGAATGTGATCCACCGTGAAGGTTGTCATGTAACGGGCATGCGGCCATAGGCAACATGTCTTGGACAAGCATGACCGTGACACCTAACTACATTCCCAGAACTTTGACTCGATTTCTATTGAATGCTTTGTGTATCTAGATCCTACAAGTTATCTAATATATATATATATATATACACACACAACTTATGATAAGCACATATGGATTTGTATTATACCTGCACCCTAATTATGGCATGAGCCACATTTTTGCAGCTACTTTCAAAATATTTATTTGGGTATCTCTTAAATTTTAACAGGATTTTGAGTGAAGGTTGTCTAGGATGACCAGGAATGGCTCAATTCTTACCACCTGAGTATTTTTTGAGGGAAAAAAATGGGTGAGTGGATATATAAACGACACTAGCAAGGATTTGGATGATATCATTTAACCGGAGAGGAACAATCTCCCCTTTTTACAGTTTATCATGTTATATGTGTCTTAAAGCCTTTTTTAGTAGTTTTATTGTTATTCGTCCTTATTTTTGGTTACGTAAAAGTTAAGGTCGTTGAAATACACATTTAAAAACTTATGTAGAAATCCCGAGTCATTTATGTGACGAGCTTTCTCCAATTATGTTGCAATTGTGGCTGAAGAAAGAAACACCTTTTAACTTGGAATTATTAGTGTTGTCTCTTGGTAGATGAAACCTCAATAGTCATAATTGTCTCTCGAATTCGACAACCATTTATGTAGACTTATATTTACATCGAGAATTTATTGTGCCTTCATGTATCTTGTTTAAAAGAAAAAGATAGTTACTGCTTAATATGTTGAGACTTGCCGTATCATACTACAACTGTTTCCTGTTCTAAAAAGTACATCGAAATTTACAGTTTTCTTTGGCATGCCGAGAGGAGGTTCGATACTTGCTGCGTTTTATGTCTGGTCGTGGGTGTTCGTGTCGAGTTTTTGAAATTATCCGTTAGGCCTGTACTCTTTTGGATTAGAGCTTTTCTTGTAGGTTAGGTTCTGGTTGGCATCCTTTTTTTGGGCAGCCGTTTTTATAGACCTGTCTTTTGCTGNTTGCTTTTTTTTTTTTTTTTTTGCCTCATTTTCTCTGGATGAAAGTTCGGGTTTCTTGGTTGAAAAAGTTTGGTCCTTAGTTGTTGCATATCTTATATTCAACACCTATTGCTTGGCTTACAAGTATTGGGATATGAGATATGCAGCATCTTTTTGGGCATGTATGTTTGCTAAACAGGTGATTTTTGCTTTCATTTTGACTATCATATTTCGAACGATTATGATGCCAGAAATACTATCTATTTAGACACTATGTTAAGAGAAACTTTTGGAAATGAATCTTTAAATCTCCTTTTTGTTTTGTTTTCCCCCCATTTGGCAGCTAAACAGATCGATTGCGGGTGCGGTCGCAGGAGCTGCAATTGCTACAAGGACTAGAAGAAGTTGGTCGCAGGTTGTTGGGATGGCTGCCCTTGTGTCTGCCTTCAGTGCTGCAGCTGAATATTCAAGATCACTTTAGAATACCTCTTGTGGGAAGAACAAAACCATGAGGTATTCACCATTCAATCCATTTCCATTACTTGTGAATGACATGCTGCATGCCCAAAATTCAGCAAATGTTGGTCCTGTATCGGTTGAAGGAGGGAGGGACCGGAACCTCGTTATGTCGTTTCCACTCAATTCTTCACAATTGCAGCTAACTTCTGGTGAGTTAAAAGCTGTAAATGATGGAAAAGCCGTGTACCAGCTTTCTAGTGGCCTACAATGACTGCTCTACTAAAGATGATGTTTACTAAAGATGAAAAACTATCGTATAGTATATTATAGTCAAATATCTTGTATGATTGAGGATATTTTACCTTCCATTACGGTTTACTGTAGGCATCATATTTGATAGACAAATATCTTGTATGATATTTAGCCTTCCATTACGATTTACCGTAAGTTTAATATTTATAAAAAGGCAGATAGAGGAACCAAATTGCAACCATATGTAAACCTCGAAAGTAAGTTGCGTAAGAAAATTCAAATTCCCAAATGCAACCTAACTCGATAGAATGTGAGTTTTTTCAAATAAATCAATTTAGACATTACCTAAATAACATTACTTTCCTTTTCTTACTAAAATACCAAC TGCATACGACTCCCCAAGGAACTTGAGAACTGAAAGATGGAAGACGAGCTCAACGGCGTCGTTCCATGTTCTTCCCTCGCCGTCGAATCCACCATTCGCGTCGGAACGGTGAACTTCACGAACAATTTCTTGAACTATGATTCGTTTTCTGTAACTTCTCCATCTGAATCTCTTTCCCCTGCTCATGTTCAGGCCGGCGCTCTATGGGGCTTGTGTATGGGTCCGTACAATTCTCGTAAAAATGGCCTCAGTGGCGTCGACCATGCTGCTTTCGTGGTATCATATACTTGCTATTTTGTTTTGATTTCCGATTATTTGGATGAGATGGTAGCATTGTGGCGTTTGTCCGATTTGAAAGTGTCTTTGTGGTCTATTTTTCAGGCGAAGTCTGTTGGAAAGAACGGCTTTCAATGTGTTGTTGCATATCTTATATTCAACACCTATTGCTTGGCTTACAAGTATTGGGATATGAGATATGCAGCATCTTTTTGGGCATGTATGTTTGCTAAACAGCTAAACAGATCGATTGCGGGTGCGGTCGCAGGAGCTGCAATTGCTACAAGGACTAGAAGAAGTTGGTCGCAGGTTGTTGGGATGGCTGCCCTTGTGTCTGCCTTCAGTGCTGCAGCTGAATATTCAAGATCACTTTAGAATACCTCTTGTGGGAAGAACAAAACCATGAGGTATTCACCATTCAATCCATTTCCATTACTTGTGAATGACATGCTGCATGCCCAAAATTCAGCAAATGTTGGTCCTGTATCGGTTGAAGGAGGGAGGGACCGGAACCTCGTTATGTCGTTTCCACTCAATTCTTCACAATTGCAGCTAACTTCTGGTGAGTTAAAAGCTGTAAATGATGGAAAAGCCGTGTACCAGCTTTCTAGTGGCCTACAATGACTGCTCTACTAAAGATGATGTTTACTAAAGATGAAAAACTATCGTATAGTATATTATAGTCAAATATCTTGTATGATTGAGGATATTTTACCTTCCATTACGGTTTACTGTAGGCATCATATTTGATAGACAAATATCTTGTATGATATTTAGCCTTCCATTACGATTTACCGTAAGTTTAATATTTATAAAAAGGCAGATAGAGGAACCAAATTGCAACCATATGTAAACCTCGAAAGTAAGTTGCGTAAGAAAATTCAAATTCCCAAATGCAACCTAACTCGATAGAATGTGAGTTTTTTCAAATAAATCAATTTAGACATTACCTAAATAACATTACTTTCCTTTTCTTACTAAAATACCAAC ATGGAAGACGAGCTCAACGGCGTCGTTCCATGTTCTTCCCTCGCCGTCGAATCCACCATTCGCGTCGGAACGGTGAACTTCACGAACAATTTCTTGAACTATGATTCGTTTTCTGTAACTTCTCCATCTGAATCTCTTTCCCCTGCTCATGTTCAGGCCGGCGCTCTATGGGGCTTGTGTATGGGTCCGTACAATTCTCGTAAAAATGGCCTCAGTGGCGTCGACCATGCTGCTTTCGTGGTATCATATACTTGCTATTTTGTTTTGATTTCCGATTATTTGGATGAGATGGTAGCATTGTGGCGTTTGTCCGATTTGAAAGTGTCTTTGTGGTCTATTTTTCAGGCGAAGTCTGTTGGAAAGAACGGCTTTCAATGTGTTGTTGCATATCTTATATTCAACACCTATTGCTTGGCTTACAAGTATTGGGATATGAGATATGCAGCATCTTTTTGGGCATGTATGTTTGCTAAACAGCTAAACAGATCGATTGCGGGTGCGGTCGCAGGAGCTGCAATTGCTACAAGGACTAGAAGAAGTTGGTCGCAGGTTGTTGGGATGGCTGCCCTTGTGTCTGCCTTCAGTGCTGCAGCTGAATATTCAAGATCACTTTAG MEDELNGVVPCSSLAVESTIRVGTVNFTNNFLNYDSFSVTSPSESLSPAHVQAGALWGLCMGPYNSRKNGLSGVDHAAFVVSYTCYFVLISDYLDEMVALWRLSDLKVSLWSIFQAKSVGKNGFQCVVAYLIFNTYCLAYKYWDMRYAASFWACMFAKQLNRSIAGAVAGAAIATRTRRSWSQVVGMAALVSAFSAAAEYSRSL
BLAST of Cp4.1LG12g05800.1 vs. Swiss-Prot
Match: OP164_ARATH (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.7e-07 Identity = 34/80 (42.50%), Postives = 40/80 (50.00%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TrEMBL
Match: A0A0A0K992_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397550 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 7.4e-15 Identity = 48/80 (60.00%), Postives = 51/80 (63.75%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TrEMBL
Match: D7U298_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00520 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11 Identity = 74/205 (36.10%), Postives = 91/205 (44.39%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TrEMBL
Match: I3T2W3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09 Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TrEMBL
Match: A0A059AXT2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01109 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08 Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TrEMBL
Match: A0A061DQU3_THECC (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein OS=Theobroma cacao GN=TCM_004660 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08 Identity = 37/80 (46.25%), Postives = 44/80 (55.00%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. TAIR10
Match: AT3G62880.1 (AT3G62880.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08 Identity = 34/80 (42.50%), Postives = 40/80 (50.00%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. NCBI nr
Match: gi|659101357|ref|XP_008451566.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Cucumis melo]) HSP 1 Score: 90.9 bits (224), Expect = 2.8e-15 Identity = 49/80 (61.25%), Postives = 51/80 (63.75%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. NCBI nr
Match: gi|449436491|ref|XP_004136026.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Cucumis sativus]) HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14 Identity = 48/80 (60.00%), Postives = 51/80 (63.75%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. NCBI nr
Match: gi|731395490|ref|XP_010652190.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic isoform X1 [Vitis vinifera]) HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11 Identity = 74/205 (36.10%), Postives = 91/205 (44.39%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. NCBI nr
Match: gi|502117806|ref|XP_004495955.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Cicer arietinum]) HSP 1 Score: 69.7 bits (169), Expect = 6.7e-09 Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1
BLAST of Cp4.1LG12g05800.1 vs. NCBI nr
Match: gi|388517587|gb|AFK46855.1| (unknown [Lotus japonicus]) HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08 Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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