Cp4.1LG11g09370.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG11g09370.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDomain of Uncharacterized protein function (DUF1995) isoform 1
LocationCp4.1LG11 : 7905392 .. 7907053 (-)
Sequence length384
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCATTCCCAAATCCTTCCTTCGGCCATTGCTCCTTCGTAGCACCATCCAATCCATCCTCATCTACGCACTTCCCCTTATCTTTTCCGCGCCCTTCTTCCCTCGCTGCCTTCCCTCCAATTTCATCCACCAAAAATGGGTCCGTTTCGAAAATTCGTGCCAAGTTCGAGAAATTTCAAGGCGAGATTCCCCAGGATGATACACAAGAACCCAATCCGTCAATGTCGTTGCAACAACAAGAACAACAGCCTTCTGTGAGTCAAGAGGTTGAAGAAGATGACAGGTTTTCAATTTCTCTTCCTCCTCAATGTTTGTTTATTGAATCTTAAAGTTGTTTCAACCCTAGAAGTTAATAGTGGAAAGATGGAAAGAATCTCATGGTGGCTCTTATTTGATTGATTAATGAGTTGCATATAATTAAGAGCTAGGTGGTATGGATTTTTTCAAGCTAATGGAGGATTTGTGACCCATAAGTCTCTCAAAATGGTCTTAAATTATGGTTGAGTGATGAAGAACTAAGTTCTGTAAACCCCAAGGGCTGGCCATGGTGGATTTCTTGGTCTAGAAAGTTCATTTATCCCCTAGGAGTGATCCTGAAGTAGCGGCTTGAGATGTTTTGGAGGGTAAGGTGATGCTGGTAGTAAGATATCCTCAAGAGGGAATATGTAACAACCAAGACCACCGCTAACAGATATTGTCCGCTTTGGACCGTTATTTATCATTGTCAGCCTCACGGTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGAAATGTTTCGTTCACCTCTCCAGCCAATGTGAGATCTCACAATTCACCGCCCTTGAAGGCCGACGTCCTTACTGGCACACCGCCTAGTGTCTGGCTCTGATACTATTTGTAACAGCCCAAGGCCACCACTAGCAAATATTGTCTGTTTTGGCCCATTATGTATCACCGTCAGCCTCACGGTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTTGTTCACCTCTTCAACCGACGTGGGATCTCAAAGAATCGGACCATGAGCATAAGGCAAGAAGTTGATTCTCTGTAAGCAAGAAATGCTTTAACTAATTGTTTTTACTGTTTGATCATCTATATGACTATTACCAACCACCATAGGTTGACCTAGTAGTCAATAAAGACCTTGTCAATAATAAAGAAGTGGGAGAGAACAAGTTCAAGCCATGGTAGCCACCTACGAACATGTCATCTATTCTTTTGCAAATAGACTAGACATGTTCAAATTAGCTAGGGAACGCTCAGCTTGACTGGAGATATTGTTGAGGATTATTGGAAGGAGTAGTCCCACGTTATTTAATTAAGAGAAAGATCATGGGTTTATAAGTAACGAACACTATCTGTTCACTAGAAGTAAACGTTCTCAATTGATACGAAATGAAAGGAGGAACAGTATTGGCCATCTTTTTGTTTTGTTTTATAAAGATTTTTGTGAAATTGAAATATCCATTCTCATTTGGTTGGTGAAGCAGGACTTTCTCAATGTTTTTACTCTCACTTTCAGCTGCTTGCCTTCAGACTTGGAGGGAGCAGTCAGGCAATCTGGTGAAGCTGCTGGTTTGTTTGTGTCTTCAGGAGGACTAAGAGCAATAGTATGA

mRNA sequence

ATGGCTTCCTCATTCCCAAATCCTTCCTTCGGCCATTGCTCCTTCGTAGCACCATCCAATCCATCCTCATCTACGCACTTCCCCTTATCTTTTCCGCGCCCTTCTTCCCTCGCTGCCTTCCCTCCAATTTCATCCACCAAAAATGGGTCCGTTTCGAAAATTCGTGCCAAGTTCGAGAAATTTCAAGGCGAGATTCCCCAGGATGATACACAAGAACCCAATCCGTCAATGTCGTTGCAACAACAAGAACAACAGCCTTCTGTGAGTCAAGAGGTTGAAGAAGATGACAGCTGCTTGCCTTCAGACTTGGAGGGAGCAGTCAGGCAATCTGGTGAAGCTGCTGGTTTGTTTGTGTCTTCAGGAGGACTAAGAGCAATAGTATGA

Coding sequence (CDS)

ATGGCTTCCTCATTCCCAAATCCTTCCTTCGGCCATTGCTCCTTCGTAGCACCATCCAATCCATCCTCATCTACGCACTTCCCCTTATCTTTTCCGCGCCCTTCTTCCCTCGCTGCCTTCCCTCCAATTTCATCCACCAAAAATGGGTCCGTTTCGAAAATTCGTGCCAAGTTCGAGAAATTTCAAGGCGAGATTCCCCAGGATGATACACAAGAACCCAATCCGTCAATGTCGTTGCAACAACAAGAACAACAGCCTTCTGTGAGTCAAGAGGTTGAAGAAGATGACAGCTGCTTGCCTTCAGACTTGGAGGGAGCAGTCAGGCAATCTGGTGAAGCTGCTGGTTTGTTTGTGTCTTCAGGAGGACTAAGAGCAATAGTATGA

Protein sequence

MASSFPNPSFGHCSFVAPSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKFQGEIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSGGLRAIV
BLAST of Cp4.1LG11g09370.1 vs. TrEMBL
Match: A0A0A0LLR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022800 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 9.8e-42
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 1

Query: 1   MASSFPNPSFGHCSFVAPSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEK 60
           MASSFPNPSF HCSF+  SN +SSTHFPLSFP P+SL+ FP ISSTKNGSVSKI  KFEK
Sbjct: 1   MASSFPNPSFPHCSFLI-SNSTSSTHFPLSFP-PTSLSVFPQISSTKNGSVSKIHGKFEK 60

Query: 61  FQGEIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSS 120
           FQGE PQDD  E NPS+SLQQQ     +SQEVEEDDSCLPSDLEGAVRQSGE+AGLFVSS
Sbjct: 61  FQGETPQDDVLEANPSLSLQQQ-----LSQEVEEDDSCLPSDLEGAVRQSGESAGLFVSS 120

Query: 121 GGLRAIV 128
           GG RAIV
Sbjct: 121 GGSRAIV 120

BLAST of Cp4.1LG11g09370.1 vs. TrEMBL
Match: A0A061F1Y0_THECC (Domain of Uncharacterized protein function (DUF1995) isoform 1 OS=Theobroma cacao GN=TCM_026556 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.8e-17
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1

Query: 6   PNPSFGHCSFVA--PSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKFQG 65
           P PS  +C   A  P++  SST+FPLSF  P   +    IS T+ GS S+  AKFEKFQG
Sbjct: 4   PAPSCFNCRCFASKPNSSISSTNFPLSFSCPI-FSGCNGISLTRTGSSSRTHAKFEKFQG 63

Query: 66  EIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSGGL 125
           + P +   E     S+Q Q QQ   +++ EEDDSCLPSDLEGAVRQSG+A+ LFVSSGGL
Sbjct: 64  D-PSEANLEDTILSSVQTQ-QQTVPAEDEEEDDSCLPSDLEGAVRQSGQASALFVSSGGL 123

Query: 126 RAIV 128
           RAIV
Sbjct: 124 RAIV 124

BLAST of Cp4.1LG11g09370.1 vs. TrEMBL
Match: A0A061F2R0_THECC (Domain of Uncharacterized protein function (DUF1995) isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_026556 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1

Query: 8   PSFGHCSFVA--PSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKFQGEI 67
           PS  +C   A  P++  SST+FPLSF  P   +    IS T+ GS S+  AKFEKFQG+ 
Sbjct: 1   PSCFNCRCFASKPNSSISSTNFPLSFSCPI-FSGCNGISLTRTGSSSRTHAKFEKFQGD- 60

Query: 68  PQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSGGLRA 127
           P +   E     S+Q Q QQ   +++ EEDDSCLPSDLEGAVRQSG+A+ LFVSSGGLRA
Sbjct: 61  PSEANLEDTILSSVQTQ-QQTVPAEDEEEDDSCLPSDLEGAVRQSGQASALFVSSGGLRA 119

BLAST of Cp4.1LG11g09370.1 vs. TrEMBL
Match: A0A0D2PGP8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G297000 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 70/126 (55.56%), Postives = 81/126 (64.29%), Query Frame = 1

Query: 2   ASSFPNPSFGHCSFVAPSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKF 61
           AS F N  F     + P++  S+T+FPLSF  P        IS T+ GS SK  AKFEKF
Sbjct: 6   ASCFNNTCF---ITLKPNSSISTTNFPLSFSYPI-FNGCNGISVTRIGSSSKTYAKFEKF 65

Query: 62  QGEIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSG 121
           QG+ P +   E     SLQ QEQ     +E EEDDSCLPSDLEGAVRQSGEA+ LFVSSG
Sbjct: 66  QGD-PSEANGEDIIVSSLQTQEQ---TIEEEEEDDSCLPSDLEGAVRQSGEASALFVSSG 123

Query: 122 GLRAIV 128
           G+RAIV
Sbjct: 126 GMRAIV 123

BLAST of Cp4.1LG11g09370.1 vs. TrEMBL
Match: D7U205_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00470 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 72/130 (55.38%), Postives = 83/130 (63.85%), Query Frame = 1

Query: 2   ASSFPNPSFGHCSFVAP-SNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEK 61
           +SSFP+ S   C   AP  N +S THF LSFP  S L     +S     S    RAKFEK
Sbjct: 5   SSSFPSFS---CFCKAPLPNSTSPTHFSLSFPA-SILGGSGAVSLHTTRSHPTTRAKFEK 64

Query: 62  FQGEIPQ-DDTQ-EPNPSMSLQQQE-QQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLF 121
           FQ + PQ DD Q    PS S    E QQ ++ +EVEEDDSCLPSDLEGAVRQSG+A+  F
Sbjct: 65  FQDDPPQADDLQFSAAPSQSSSPLESQQQAIQEEVEEDDSCLPSDLEGAVRQSGQASASF 124

Query: 122 VSSGGLRAIV 128
           VSSGG+RAIV
Sbjct: 125 VSSGGMRAIV 130

BLAST of Cp4.1LG11g09370.1 vs. TAIR10
Match: AT5G27560.1 (AT5G27560.1 Domain of unknown function (DUF1995))

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-12
Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1

Query: 45  STKNGSVSKIRAKFEKFQGEIPQDDTQEPNPSMSLQQQ---EQQPSVSQEVEEDDSCLPS 104
           S    S  +   KFEKFQG+ P +     + S S+ Q+   E+     +E E+DD CLP+
Sbjct: 35  SASTNSRLRTCVKFEKFQGDSPLEQNTSVSSSSSVSQELPLEEAQDQLEEEEDDDDCLPN 94

Query: 105 DLEGAVRQSGEAAGLFVSSGGLRAIV 128
           DLEGAVRQSGEA   FV+SGG RAIV
Sbjct: 95  DLEGAVRQSGEAGAAFVNSGGNRAIV 120

BLAST of Cp4.1LG11g09370.1 vs. NCBI nr
Match: gi|449442817|ref|XP_004139177.1| (PREDICTED: uncharacterized protein LOC101209109 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 1

Query: 1   MASSFPNPSFGHCSFVAPSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEK 60
           MASSFPNPSF HCSF+  SN +SSTHFPLSFP P+SL+ FP ISSTKNGSVSKI  KFEK
Sbjct: 1   MASSFPNPSFPHCSFLI-SNSTSSTHFPLSFP-PTSLSVFPQISSTKNGSVSKIHGKFEK 60

Query: 61  FQGEIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSS 120
           FQGE PQDD  E NPS+SLQQQ     +SQEVEEDDSCLPSDLEGAVRQSGE+AGLFVSS
Sbjct: 61  FQGETPQDDVLEANPSLSLQQQ-----LSQEVEEDDSCLPSDLEGAVRQSGESAGLFVSS 120

Query: 121 GGLRAIV 128
           GG RAIV
Sbjct: 121 GGSRAIV 120

BLAST of Cp4.1LG11g09370.1 vs. NCBI nr
Match: gi|659070325|ref|XP_008454557.1| (PREDICTED: uncharacterized protein LOC103494946 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 7.0e-41
Identity = 100/127 (78.74%), Postives = 106/127 (83.46%), Query Frame = 1

Query: 1   MASSFPNPSFGHCSFVAPSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEK 60
           MASSFPNPSF HCSF+  SN +SSTHFPLS+P P+SL  FP ISSTKNGSVSKI  KFEK
Sbjct: 1   MASSFPNPSFPHCSFLI-SNSTSSTHFPLSYP-PTSLTVFPQISSTKNGSVSKIHGKFEK 60

Query: 61  FQGEIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSS 120
           FQGE PQDD  + NPS SLQQQ     +SQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSS
Sbjct: 61  FQGETPQDDVLDANPSSSLQQQ-----LSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSS 120

Query: 121 GGLRAIV 128
           GG RAIV
Sbjct: 121 GGARAIV 120

BLAST of Cp4.1LG11g09370.1 vs. NCBI nr
Match: gi|590643565|ref|XP_007030838.1| (Domain of Uncharacterized protein function (DUF1995) isoform 1 [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 5.4e-17
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1

Query: 6   PNPSFGHCSFVA--PSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKFQG 65
           P PS  +C   A  P++  SST+FPLSF  P   +    IS T+ GS S+  AKFEKFQG
Sbjct: 4   PAPSCFNCRCFASKPNSSISSTNFPLSFSCPI-FSGCNGISLTRTGSSSRTHAKFEKFQG 63

Query: 66  EIPQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSGGL 125
           + P +   E     S+Q Q QQ   +++ EEDDSCLPSDLEGAVRQSG+A+ LFVSSGGL
Sbjct: 64  D-PSEANLEDTILSSVQTQ-QQTVPAEDEEEDDSCLPSDLEGAVRQSGQASALFVSSGGL 123

Query: 126 RAIV 128
           RAIV
Sbjct: 124 RAIV 124

BLAST of Cp4.1LG11g09370.1 vs. NCBI nr
Match: gi|590643569|ref|XP_007030839.1| (Domain of Uncharacterized protein function (DUF1995) isoform 2, partial [Theobroma cacao])

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1

Query: 8   PSFGHCSFVA--PSNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEKFQGEI 67
           PS  +C   A  P++  SST+FPLSF  P   +    IS T+ GS S+  AKFEKFQG+ 
Sbjct: 1   PSCFNCRCFASKPNSSISSTNFPLSFSCPI-FSGCNGISLTRTGSSSRTHAKFEKFQGD- 60

Query: 68  PQDDTQEPNPSMSLQQQEQQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLFVSSGGLRA 127
           P +   E     S+Q Q QQ   +++ EEDDSCLPSDLEGAVRQSG+A+ LFVSSGGLRA
Sbjct: 61  PSEANLEDTILSSVQTQ-QQTVPAEDEEEDDSCLPSDLEGAVRQSGQASALFVSSGGLRA 119

BLAST of Cp4.1LG11g09370.1 vs. NCBI nr
Match: gi|147798216|emb|CAN60540.1| (hypothetical protein VITISV_018288 [Vitis vinifera])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 72/130 (55.38%), Postives = 83/130 (63.85%), Query Frame = 1

Query: 2   ASSFPNPSFGHCSFVAP-SNPSSSTHFPLSFPRPSSLAAFPPISSTKNGSVSKIRAKFEK 61
           +SSFP+ S   C   AP  N +S THF LSFP  S L     +S     S    RAKFEK
Sbjct: 5   SSSFPSFS---CFCKAPLPNSTSPTHFSLSFPA-SILGGSGAVSLHTTRSHPTTRAKFEK 64

Query: 62  FQGEIPQ-DDTQ-EPNPSMSLQQQE-QQPSVSQEVEEDDSCLPSDLEGAVRQSGEAAGLF 121
           FQ + PQ DD Q    PS S    E QQ ++ +EVEEDDSCLPSDLEGAVRQSG+A+  F
Sbjct: 65  FQDDPPQADDLQFSAAPSQSSSPLESQQQAIQEEVEEDDSCLPSDLEGAVRQSGQASASF 124

Query: 122 VSSGGLRAIV 128
           VSSGG+RAIV
Sbjct: 125 VSSGGMRAIV 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LLR1_CUCSA9.8e-4279.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022800 PE=4 SV=1[more]
A0A061F1Y0_THECC3.8e-1754.84Domain of Uncharacterized protein function (DUF1995) isoform 1 OS=Theobroma caca... [more]
A0A061F2R0_THECC1.4e-1654.92Domain of Uncharacterized protein function (DUF1995) isoform 2 (Fragment) OS=The... [more]
A0A0D2PGP8_GOSRA4.2e-1655.56Uncharacterized protein OS=Gossypium raimondii GN=B456_007G297000 PE=4 SV=1[more]
D7U205_VITVI4.2e-1655.38Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00470 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G27560.14.3e-1248.84 Domain of unknown function (DUF1995)[more]
Match NameE-valueIdentityDescription
gi|449442817|ref|XP_004139177.1|1.4e-4179.53PREDICTED: uncharacterized protein LOC101209109 [Cucumis sativus][more]
gi|659070325|ref|XP_008454557.1|7.0e-4178.74PREDICTED: uncharacterized protein LOC103494946 [Cucumis melo][more]
gi|590643565|ref|XP_007030838.1|5.4e-1754.84Domain of Uncharacterized protein function (DUF1995) isoform 1 [Theobroma cacao][more]
gi|590643569|ref|XP_007030839.1|2.1e-1654.92Domain of Uncharacterized protein function (DUF1995) isoform 2, partial [Theobro... [more]
gi|147798216|emb|CAN60540.1|6.0e-1655.38hypothetical protein VITISV_018288 [Vitis vinifera][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG11g09370Cp4.1LG11g09370gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG11g09370.1:cds:002Cp4.1LG11g09370.1:cds:002CDS
Cp4.1LG11g09370.1:cds:001Cp4.1LG11g09370.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG11g09370.1Cp4.1LG11g09370.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35509FAMILY NOT NAMEDcoord: 1..127
score: 1.6
NoneNo IPR availablePANTHERPTHR35509:SF1SUBFAMILY NOT NAMEDcoord: 1..127
score: 1.6