Cp4.1LG11g09200.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09200.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Superoxide dismutase [Cu-Zn]
Location	Cp4.1LG11 : 7718961 .. 7722186 (+)
Sequence length	1023

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCCCTGAAGAATAGTAATGGAGCGAACAACCACACCACCGCTTGTCCTCTATATATAAACTGCAAGAGCCCTAAGGCTTTTCAACTTCTAGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGGTGAGCCTTCCTCTCTTTCTCTCGTTTCTTCCATGATTCTTTGTTTCTCAGATCCATCGCTTTACTGAAATCTGATCTGATTTTTGCTGTATTATCTCCTTTGTTGTGATGATGTCTTGGCTGTAATTCTTCCGAAATTTTACCTTGATTCAGTTGTTATTGTGATGATCTTCTTTTGGATGATATGATATCTAGTTTCATCTCAAATTTCGAAATGATTTGATTCATCGCTTGTAACAGTGTGATTTTTTGTACTCTTTGATGCCGATCAAAACTATGATAGTTGTACCGAATTTTACCTTAATGATTCCATAACGTTGACTATTTGGAACTTTAGATTGCTACTTTACGTGATTTGAGATAGTACGAAACTTGTGGTATTCATCATAATCGGTCCAGATTTTATGTACAGCTCGCATAATTATGAGCTTGTTCTTGTTATTTTGAATTGGAGTCCTTTTCTAAGGTAAGGCTGGATTTCATTCTTTTACTTCTCTCGATGAAGTTGCAGTTTTTTTTTACCAAAAATTATTTGAGTCATTTCCGTACATGAGTTAGAGTTATGAAATGTCAAAATGCATGTTTTGCAAATAGATCGTGATCTGGTGTCATATTTTTTAAGTTTCTGATTTCTTTCGTTGATTTCGTGTTTTTCTTAGTTGTCTAATTTCGTTAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTAATATGGTGATTGGTTTCATATGTGCTTCTCATGTTCATTTCTTCTCTGTCTTGTACTTAAGACTGAAATTGTTTCAGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGTATTGCTATTGACATTTAGGATATTTTCATGACCTCTCTACTTTGAAGTAATTTAGATGTTTGTCAAACAGTTGAAAATAGATGCCGTCCTTTATCCAGCATGAATTTTTTTTTATTAGATCTCGGCAGTAAAATTTCTCAATATACTTACAGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGTACGCTTCACATAGAATAAGTTCAATTCTTGCTGTGTTATGTTCTATTTCCTTTTTGGCATAACCCCCTTATATTATACTTGTTGAGGCTATATTTGTAAGAATATGTTCTTATCTTAGATTTTCTTTGATATGTACCTAATCTGATGTTGGCTCTCATATCTTGTTCTATTTATTTAGTTGTTGAATACTAACACTTTCAACGTTGTGTACAGGAAAGGCTAGCTTTACCATTACTGATAACCAGGTATTTCCTGATGCTGCCCCTGTTTAATTAATTTTGTTAGGGAAAAACAATATGGTTCTTCCTCCTTTTTGTGTTAACATTAGATTTTACATGCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTAATTTCTCTAAGCATTTGTTGTTCGATAGTCCTTTGAGCTATTCTTGATAGTATCTCGTCCTATATCTTCCATATCCTAACTCAAGAAGATTATTGTCAATTAGTAAGGCTATTCCACAGAAAATTATTTATTTTCTTCAAAAAAATCCATAGTGATAATCTCCCATGTTTTGTTTAGTTTCTTTCATCTGCGGGGCTCATGAACAGGCTTATAGAACAGAAGTATGAACTGGATCAATTATATAATAGAGTTCAAATGATTATTTGGGGGCGGTTAGAACTCAGTTGTTGGGTTTGGATATTAGCACAAAACCAACTGTCTATCAATATTCAAAGGGGAAATAACATGGTAGGGATCAATTTTAGGACTCGGTGCTCGAAAACCATGTTAACTATCACTAAACTCTCAAAAGCATAAGCTGATAGGTAAGAGGAAAATAAGTAGGGTATCTTTCACTGAATTTTCTTCATGTTTCTAAGTATTGCTAGGTGCTTTGGAAAAACTTCAAAACATCTAAAAATGCTTTGTGAAAAAGCTTTTGTAGAGTGATTGATTGCACTCAAATGTGCTTTTAAGATTGTAAAATATTTGCTATTAAACACTTCTTACTAGTGTCTTTTTGCTTAAAGTATCATGAAGTATTATCTACCATGGGTTGTTGATGGGCCACCTACTTAGGATTTAATATTGTATGTGTTACTCTTTTAACCGAAATGTAGTAAAGTCGGATAGTTCTCTCACAAGAATAACGAAAATGTGTGCCAAATGTATCTTGAAGCGTTCCCAAACATGCCTCTTTATGTATTATCTTATCAATTGGGTAATTTTTGATATGTAGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCAAACCATGAAATTTTTATACTGTTCTTCCATCCGGCCTTGCCCTATTAAGGTTATATGCCGTTCACCATATTTCTGAACCGTTTGACATCATTTCTTGTCTTTTTTTTTATTTATTTTCAGGCATTATTGGGTTGCAAGGTTGAAATTCGTTGCCGAATCGAATCCAAGTGCTCTAATGTTTCCAGGAAGAGTCCTAAACTCTTTTTATTGAATAAAAGCAAGGCATTGGATTGTTTTGTTCTGTTTGTGATGATAGATCTTTTACTTATCTGTTCTTGTCTGCTGTTTTATTAATATATATCTGGAATTTTAGTGTCTTCTTTTTAAGTCAAAATCATAAAAATTCGAAACAAACTAGAAGGCCTCACAGATTACAAGAACACTACGGTGATTCCTATCTTGAAGAACCAGATTAGATTCCAAACTTGTTTTGTTTGTAAGATGGGTCCACCTTATCACCTTTACCTTCCTTTTCCTGCAAATAGAACACTAGGGATGATTTGTCGATTTTATTTGATAGGAAGTGAAAGAATATAGAGAA

mRNA sequence

TACCCCTGAAGAATAGTAATGGAGCGAACAACCACACCACCGCTTGTCCTCTATATATAAACTGCAAGAGCCCTAAGGCTTTTCAACTTCTAGAGTCTTCTACTGCTTCAATATCTCCCGACCTTTCTTTCAGCCGTCCAAGGGGTGTTCTGAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGGTTGCAAGGTTGAAATTCGTTGCCGAATCGAATCCAAGTGCTCTAATGTTTCCAGGAAGAGTCCTAAACTCTTTTTATTGAATAAAAGCAAGGCATTGGATTGTTTTGTTCTGTTTGTGATGATAGATCTTTTACTTATCTGTTCTTGTCTGCTGTTTTATTAATATATATCTGGAATTTTAGTGTCTTCTTTTTAAGTCAAAATCATAAAAATTCGAAACAAACTAGAAGGCCTCACAGATTACAAGAACACTACGGTGATTCCTATCTTGAAGAACCAGATTAGATTCCAAACTTGTTTTGTTTGTAAGATGGGTCCACCTTATCACCTTTACCTTCCTTTTCCTGCAAATAGAACACTAGGGATGATTTGTCGATTTTATTTGATAGGAAGTGAAAGAATATAGAGAA

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAATAGCGAGTGTGTTATTGGAACTATCTTTTTCTCCCAAGAAGGAGATGGTCCAACCACGGTTACGGGCGATGTTTCTGGTCTCAAGGCTGGGCTTCATGGATTCCATGTTCATGCCATGGGTGACACAACCAACGGCTGCATGTCAACTGGACCACATTTCAACCCTGCTGGAAAACAGCATGGTGCTCCCGAGGACGAGAATCGCCATGCTGGTGATTTAGGGAACATTACTGTTGGTGAAGATGGAAAGGCTAGCTTTACCATTACTGATAACCAGATTCCTCTCTCTGGACCTAACTCCATTATCGGAAGGGCTGTTGTGGTCCATGCTGACCCCGACGATCTTGGCAAGGGTGGACATGAACTCAGCTTATCTACTGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGGTTGCAAGGTTGA

Protein sequence

MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSLSTGNAGARVACGIIGLQG

Homology

[Close]

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 9.8e-74
Identity = 132/152 (86.84%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SECV GTI FSQ+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDENRHAGDLGNITVGEDG ASFTITD QIPL+GP SIIGR VVVHA
Sbjct: 61  PHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHEL+ +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELTKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-73
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFFSQEGDGPTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAP D+NRHAGDLGNITVGEDG ASFTITD QIPL+G NS+IGRAVVVH 
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 2.4e-72
Identity = 130/152 (85.53%), Postives = 140/152 (92.11%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+SE V GTIFF+QEGDGPTTVTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-72
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL +SE V GTIFF+Q+GD PTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPAGK+HGAPEDE RHAGDLGNITVGEDG ASFT+TD QIPL+GP SIIGRAVVVHA
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-71
Identity = 128/152 (84.21%), Postives = 139/152 (91.45%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG+S+ V GTIFF+QEGDGPT VTG VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PH+NPA K+HGAPEDENRHAGDLGN+T G DG A+  +TD+QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL
Match: W0FVL0_CUCMA (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima GN=Cu PE=2 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.1e-82
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL
Match: W0FW16_CUCMO (Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata GN=Cu PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 2.0e-81
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNS CV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSVCVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL
Match: A0A0U2DB27_LUFAE (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.2e-75
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVK VAVLG+SE V GTIFFSQEGDGPTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTI+D QIPLSGPNSIIGRAVVVH 
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL
Match: Q3SAX1_GOSHI (Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.8e-73
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG++E V GT+FFSQEGDGPTTVTG++SGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAPEDENRHAGDLGN+TVG+DG ASF+ITD QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL
Match: A0A0B0N3U9_GOSAR (Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_34570 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.8e-73
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG++E V GT+FFSQEGDGPTTVTG++SGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAPEDENRHAGDLGN+TVG+DG ASF+ITD QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TAIR10
Match: AT1G08830.1 (AT1G08830.1 copper/zinc superoxide dismutase 1)

HSP 1 Score: 267.7 bits (683), Expect = 4.4e-72
Identity = 129/152 (84.87%), Postives = 138/152 (90.79%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           M K VAVL +SE V GTIFF+QEGDG TTV+G VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNP GK HGAPED NRHAGDLGNITVG+DG A+FTITD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TAIR10
Match: AT2G28190.1 (AT2G28190.1 copper/zinc superoxide dismutase 2)

HSP 1 Score: 204.1 bits (518), Expect = 6.0e-53
Identity = 98/148 (66.22%), Postives = 112/148 (75.68%), Query Frame = 1


Query: 3   KAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGPH 62
           KAVAVL  +  V G +  +Q+  GPTTV   ++GL  G HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHADP 122
           FNP    HGAPEDE RHAGDLGNI    DG A  TI DNQIPL+GPNS++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSLSTGNAGARVACGIIGL 151
           DDLGKGGHELSL+TGNAG R+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of Cp4.1LG11g09200.1 vs. TAIR10
Match: AT5G18100.1 (AT5G18100.1 copper/zinc superoxide dismutase 3)

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-52
Identity = 96/150 (64.00%), Postives = 112/150 (74.67%), Query Frame = 1


Query: 2   VKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL  G HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHAD 121
           HFNP  + HG P +E RHAGDLGNI  G +G A   I D  IPLSG  SI+GRAVVVHAD
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSLSTGNAGARVACGIIGLQ 152
           PDDLGKGGH+LS STGNAG+RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr
Match: gi|571331010|gb|AHF27437.1| (superoxide dismutase [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-82
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNSECV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSECVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr
Match: gi|571331004|gb|AHF27434.1| (superoxide dismutase [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 2.9e-81
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLGNS CV+GTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGNSVCVVGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSLSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr
Match: gi|844289602|gb|AKN08991.1| (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 288.1 bits (736), Expect = 8.9e-75
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVK VAVLG+SE V GTIFFSQEGDGPTTVTG+VSGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTI+D QIPLSGPNSIIGRAVVVH 
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSL+TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr
Match: gi|74229677|gb|ABA00453.1| (cytoplasmic Cu/ZnSOD [Gossypium hirsutum])

HSP 1 Score: 281.6 bits (719), Expect = 8.3e-73
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVLG++E V GT+FFSQEGDGPTTVTG++SGLK GLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSNEGVSGTVFFSQEGDGPTTVTGNLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAPEDENRHAGDLGN+TVG+DG ASF+ITD QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr
Match: gi|823263606|ref|XP_012464569.1| (PREDICTED: superoxide dismutase [Cu-Zn])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 134/152 (88.16%), Postives = 145/152 (95.39%), Query Frame = 1


Query: 1   MVKAVAVLGNSECVIGTIFFSQEGDGPTTVTGDVSGLKAGLHGFHVHAMGDTTNGCMSTG 60
           MVKAVAVL ++E V GT+FFSQEGDGPTTVTG++SGLKAGLHGFHVHA+GDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSNEGVSGTVFFSQEGDGPTTVTGNLSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGK+HGAPEDENRHAGDLGN+TVG+DG ASF+ITD QIPL+GPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGCASFSITDKQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SODC_CAPAN	9.8e-74	86.84	Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1	[more]
SODC_IPOBA	1.3e-73	88.16	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2	[more]
SODC4_MAIZE	2.4e-72	85.53	Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2	[more]
SODC_NICPL	3.2e-72	86.18	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2	[more]
SODC5_MAIZE	2.0e-71	84.21	Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2	[more]

BLAST of Cp4.1LG11g09200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W0FVL0_CUCMA	3.1e-82	99.34	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima GN=Cu PE=2 SV=1	[more]
W0FW16_CUCMO	2.0e-81	98.68	Superoxide dismutase [Cu-Zn] OS=Cucurbita moschata GN=Cu PE=2 SV=1	[more]
A0A0U2DB27_LUFAE	6.2e-75	92.11	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca PE=2 SV=1	[more]
Q3SAX1_GOSHI	5.8e-73	88.16	Superoxide dismutase [Cu-Zn] OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0N3U9_GOSAR	5.8e-73	88.16	Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_34570 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g09200.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08830.1	4.4e-72	84.87	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	6.0e-53	66.22	copper/zinc superoxide dismutase 2	[more]
AT5G18100.1	3.9e-52	64.00	copper/zinc superoxide dismutase 3	[more]

BLAST of Cp4.1LG11g09200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|571331010\|gb\|AHF27437.1\|	4.4e-82	99.34	superoxide dismutase [Cucurbita maxima]	[more]
gi\|571331004\|gb\|AHF27434.1\|	2.9e-81	98.68	superoxide dismutase [Cucurbita moschata]	[more]
gi\|844289602\|gb\|AKN08991.1\|	8.9e-75	92.11	superoxide dismutase [Luffa aegyptiaca]	[more]
gi\|74229677\|gb\|ABA00453.1\|	8.3e-73	88.16	cytoplasmic Cu/ZnSOD [Gossypium hirsutum]	[more]
gi\|823263606\|ref\|XP_012464569.1\|	1.1e-72	88.16	PREDICTED: superoxide dismutase [Cu-Zn]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004784	superoxide dismutase activity
GO:0046872	metal ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0006801	superoxide metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR024134	SOD_Cu/Zn_/chaperone
IPR018152	SOD_Cu/Zn_BS
IPR001424	SOD_Cu_Zn_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006801	superoxide metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0046686	response to cadmium ion
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004784	superoxide dismutase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g09200	Cp4.1LG11g09200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09200.1	Cp4.1LG11g09200.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09200.1:five_prime_utr:001	Cp4.1LG11g09200.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG11g09200.1:five_prime_utr:002	Cp4.1LG11g09200.1:five_prime_utr:002	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09200.1:cds:001	Cp4.1LG11g09200.1:cds:001	CDS
Cp4.1LG11g09200.1:cds:002	Cp4.1LG11g09200.1:cds:002	CDS
Cp4.1LG11g09200.1:cds:003	Cp4.1LG11g09200.1:cds:003	CDS
Cp4.1LG11g09200.1:cds:004	Cp4.1LG11g09200.1:cds:004	CDS
Cp4.1LG11g09200.1:cds:005	Cp4.1LG11g09200.1:cds:005	CDS
Cp4.1LG11g09200.1:cds:006	Cp4.1LG11g09200.1:cds:006	CDS
Cp4.1LG11g09200.1:cds:007	Cp4.1LG11g09200.1:cds:007	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09200.1:three_prime_utr:001	Cp4.1LG11g09200.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 79..88 score: 8.5E-47coord: 43..65 score: 8.5E-47coord: 123..149 score: 8.5E-47coord: 98..120 score: 8.5
IPR001424	Superoxide dismutase, copper/zinc binding domain	GENE3D	G3DSA:2.60.40.200		coord: 2..150 score: 1.5
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 13..148 score: 1.8
IPR001424	Superoxide dismutase, copper/zinc binding domain	unknown	SSF49329	Cu,Zn superoxide dismutase-like	coord: 2..150 score: 2.09
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53 scor
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148 scor
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..152 score: 2.6