Cp4.1LG11g09040.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g09040.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L18
Location	Cp4.1LG11 : 7248057 .. 7250436 (-)
Sequence length	897

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACATCATTTATGCCCTCGGCTTCCATAAAAAGGGTCTTCAAAAACCCTAGAGCCATTTTCCTCCCCCCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACAATGGTCAGTCTTTTTCTCTTTCTCTCTTTACTTCATTTTCTCTGCGTACAATGGCGTAGATCAATGTCTTAGATGCGTTTTCCATTTATTACAGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGGTTGGTTTTTTCTAATCGTCATTGGTTCCGCTGTACTCACTTGCTCTTGCATTTTTGTGGCTTTTTCTTAGCGAATGGTGATTAATGCGTATGGTTATTTTAAAATGAATTTGGTTTAACTTAAGATATCGCGAATGGAGAATGGAGTTTCAAATCTAATTTTGTGAGCATCATTTGGAACTTTATCCATTGTTATTTTTGTATTTGTTCTCTGCTCATATTTCGGTTTTTGGTTCTACATTTTTTTAACCTAGTTGTGTTTGAAATGTGGTTGTTTGATAAGAAAGTAAAGGAAATTTCATATGCAGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTCCGTAGGTCTAGGAATGAACTAGTTCCACATTTATCTGAGCCCAGGTTTAGAGTTCAGTTTTCTAGTTTAATTTGAACAAGAACCAGGAGATGTCATTAATCATTGTCCATTAATAAACCTTGATTTCAAATTTTTAGTTTTGGAACCTTTTTTGCTCTCATGGAGTCAATGTTTTAGTTCTCATTCACTATATTTTGATTGGTATCCGACTATGTTCTCTTCCGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTTTTTAGGTCAAGGACTGGACTTCATCCACATATTTGTCTGAGCTCAAATTATTCTACTTTTGAAGTTTCTTTCATTTCATCTTGAATTCGGAAGTAAAGTGGATATGAAAAATATGGGTCATGCTTTCATTTCTGCTGTGTCCATTTACTTTTCGAGTCTCTGGCTTCTTTATCTATACATATCTGGAAGGAAGTTTAGACTTTTAATGGTGGACCAAGGCTTCTATCCATTCTGATAGAGAGATGGGTTGTTGTTCCCTGTGATGCTTCATTTTTCAAACCATGCTAATACTGATTACACGATGACTGATCTTCAACTTGTCACTGAGGGAACTAGCCTAGAGTCATAAATTTATTATTTCCAGTAGTGGTGCGTGTTTGTTTGCATATCCAAACTATTTGTAATAACCTTTTTTTTAGAAGCTTAGTAGTTCATTACCCTTATTTGGATTGCTTAAATCATTGGTCTTTAATCTTGTTTACTGAATTCAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGTGTGTACTTCTATTTATGCACTACATGTTCTTAATATTTTGATTTCAGCCTTTCAGGAGTGTGTTATTTTCGATTGTCTAAATTCTCTGGTGATTAACATGGTATAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTACGATTACAAGTCCCATTTACTTTCTCTCACTCTCGAACACAACCTCTGATATGCAAAAGCAACTGTGTGCTTGGTATTTTATCAGTTCATGTTCATCTTAGAAGCCACCTGCATGTTGAACATTATGCACAAATGCTTGGATTCATGCTTAATCTTCTGTTAATTTTGCTTTCAAAGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCAGCATATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGATAGATCTTGTTTAAATACTTTATTTTCTCTCTCTTGATTTTCATTGGATGATTTTATGAACGTCATTACACTTTT

mRNA sequence

TACATCATTTATGCCCTCGGCTTCCATAAAAAGGGTCTTCAAAAACCCTAGAGCCATTTTCCTCCCCCCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGTTTTCTCCACCATAAACGACAATGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAATTTCAGCATATGTTCGACCCTTTTTGTGAGACAAAAAATTCATGTTTTGCTAGACTTGCAGAGATATTATTATGAGACTCAGTTATGTCTTAGTACAAGTTTTCATTATTATAAAACCTTAATCGTATTCAGTGATAGATCTTGTTTAAATACTTTATTTTCTCTCTCTTGATTTTCATTGGATGATTTTATGAACGTCATTACACTTTT

Coding sequence (CDS)

ATGGGGATAGATCTTGTAGCAGGCGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCGATTTCAATGCTGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCACAAAGGGAAAGGAAGATAAAATTGCCGTCATTGTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTAACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAGTGCTTGACATTCGACCAGCTTGCTCTGAGGGCTCCTCTTGGCCAGAATACGGTTCTTCTTCGTGGACCGAAGAATTCCCGTGAAGCCGTGAAGCACTTTGGTCCGGCTCCTGGTGTTCCTCACAGCCACACGAAACCATACGTGAGGGCGAAGGGAAGGAAGTTTGAGAGAGCAAGAGGAAAAAGAAACAGCAGGGGATACAGAGTTTAA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRNSRGYRV

Homology

[Close]

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2)

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-89
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVRAKGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 7.8e-89
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S+FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-82
Identity = 154/184 (83.70%), Postives = 173/184 (94.02%), Query Frame = 1


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT S+FNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFD 123
           LSRLIK+ +GKE KI V+VG VTDDIRVY+VP +KVTAL+FTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRNSR 183
           QLALR PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR+KGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GYRV 188
           G+RV
Sbjct: 181 GFRV 183

[Close]

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-77
Identity = 148/188 (78.72%), Postives = 166/188 (88.30%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL+++  GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGYRV 188
           R SRG++V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.9e-64
Identity = 124/188 (65.96%), Postives = 157/188 (83.51%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGID +     +K  R  PKS+++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 60

Query: 61  PISLSRLIKFTK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGE 120
            ISL+R+ +F K  G+E+ IAV+VGTVTDD+R+Y+VP L++ ALR TE ARARI KAGGE
Sbjct: 61  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 120

Query: 121 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARG 180
            LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVR+KGRKFERARG
Sbjct: 121 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGYR 187
           +R SR Y+
Sbjct: 181 RRKSRRYK 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL
Match: A0A0A0LFX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.3e-94
Identity = 180/187 (96.26%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+  GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL
Match: A0A067JZH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 9.6e-94
Identity = 177/187 (94.65%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSK+NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI FTKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLISFTKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL
Match: A0A0D2TP40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-93
Identity = 177/187 (94.65%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+F KGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL
Match: I1NB76_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G211800 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-93
Identity = 176/187 (94.12%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI++TKGKEDKIAV+VG VTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRAKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL
Match: A0A0B2SFB6_GLYSO (60S ribosomal protein L18-2 OS=Glycine soja GN=glysoja_002086 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.2e-93
Identity = 176/187 (94.12%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAV+LKRLFMSKVNKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVVLKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI++TKGKEDKIAV+VG VTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRAKGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TAIR10
Match: AT3G05590.1 (AT3G05590.1 ribosomal protein L18)

HSP 1 Score: 329.7 bits (844), Expect = 1.2e-90
Identity = 163/187 (87.17%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GKEDKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVRAKGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TAIR10
Match: AT5G27850.1 (AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 327.8 bits (839), Expect = 4.4e-90
Identity = 162/187 (86.63%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ S+FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRL++F  GK+DKIAV+VGT+TDD+RV+E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGYRV 188
            SRG++V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. TAIR10
Match: AT2G47570.1 (AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.3e-53
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 54  MSKVNKPPISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIE 113
           MSKVNK P+SLSRL+++  GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGYRV 188
            E ARG+R SRG++V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr
Match: gi|659070222|ref|XP_008454015.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo])

HSP 1 Score: 354.4 bits (908), Expect = 1.2e-94
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+ KGKE KIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMKGKEAKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr
Match: gi|449454059|ref|XP_004144773.1| (PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 6.2e-94
Identity = 180/187 (96.26%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           PISLSRLIK+  GKE +IAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKYMNGKEGRIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr
Match: gi|802688969|ref|XP_012082803.1| (PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas])

HSP 1 Score: 350.9 bits (899), Expect = 1.4e-93
Identity = 177/187 (94.65%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDL AGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSK+NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI FTKGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLISFTKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR+KGRKFERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 180

Query: 181 NSRGYRV 188
           NSRG+RV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr
Match: gi|778662398|ref|XP_011659839.1| (PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus])

HSP 1 Score: 350.5 bits (898), Expect = 1.8e-93
Identity = 177/187 (94.65%), Postives = 184/187 (98.40%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKR APKSDDIYLKLLVKLYRFLVRRTGS+FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRVAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+FTKGKE KIAV+VGT+TDDIRVYEVPALKV ALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKR 180

Query: 181 NSRGYRV 188
           NSRGYRV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr
Match: gi|823197185|ref|XP_012434195.1| (PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii])

HSP 1 Score: 350.5 bits (898), Expect = 1.8e-93
Identity = 177/187 (94.65%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSDFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120
           P+SLSRLI+F KGKEDKIAV+VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLIEFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKR 180
           TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVR+KGRK+ERARG+R
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKYERARGRR 180

Query: 181 NSRGYRV 188
           NS+G+RV
Sbjct: 181 NSKGFRV 187

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL182_ARATH	2.1e-89	87.17	60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2	[more]
RL183_ARATH	7.8e-89	86.63	60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1	[more]
RL18_CICAR	2.4e-82	83.70	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1	[more]
RL181_ARATH	1.1e-77	78.72	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3	[more]
RL18_IXOSC	3.9e-64	65.96	60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g09040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFX7_CUCSA	4.3e-94	96.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G032220 PE=4 SV=1	[more]
A0A067JZH0_JATCU	9.6e-94	94.65	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13954 PE=4 SV=1	[more]
A0A0D2TP40_GOSRA	1.2e-93	94.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G301700 PE=4 SV=1	[more]
I1NB76_SOYBN	1.2e-93	94.12	Uncharacterized protein OS=Glycine max GN=GLYMA_19G211800 PE=4 SV=1	[more]
A0A0B2SFB6_GLYSO	1.2e-93	94.12	60S ribosomal protein L18-2 OS=Glycine soja GN=glysoja_002086 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g09040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05590.1	1.2e-90	87.17	ribosomal protein L18	[more]
AT5G27850.1	4.4e-90	86.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.1	3.3e-53	76.30	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Cp4.1LG11g09040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070222\|ref\|XP_008454015.1\|	1.2e-94	96.79	PREDICTED: 60S ribosomal protein L18-3 [Cucumis melo]	[more]
gi\|449454059\|ref\|XP_004144773.1\|	6.2e-94	96.26	PREDICTED: 60S ribosomal protein L18-3 [Cucumis sativus]	[more]
gi\|802688969\|ref\|XP_012082803.1\|	1.4e-93	94.65	PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]	[more]
gi\|778662398\|ref\|XP_011659839.1\|	1.8e-93	94.65	PREDICTED: 60S ribosomal protein L18-2-like [Cucumis sativus]	[more]
gi\|823197185\|ref\|XP_012434195.1\|	1.8e-93	94.65	PREDICTED: 60S ribosomal protein L18-2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR000039	Ribosomal_L18e

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g09040	Cp4.1LG11g09040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09040.1	Cp4.1LG11g09040.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09040.1:five_prime_utr:001	Cp4.1LG11g09040.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09040.1:cds:005	Cp4.1LG11g09040.1:cds:005	CDS
Cp4.1LG11g09040.1:cds:004	Cp4.1LG11g09040.1:cds:004	CDS
Cp4.1LG11g09040.1:cds:003	Cp4.1LG11g09040.1:cds:003	CDS
Cp4.1LG11g09040.1:cds:002	Cp4.1LG11g09040.1:cds:002	CDS
Cp4.1LG11g09040.1:cds:001	Cp4.1LG11g09040.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g09040.1:three_prime_utr:001	Cp4.1LG11g09040.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 2..187 score: 6.6E
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 score: 3.0
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 20..139 score: 9.81
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 21..139 score: 6.6