Cp4.1LG09g00940.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g00940.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA polymerase III subunit-like protein
Location	Cp4.1LG09 : 513901 .. 520915 (-)
Sequence length	2293

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCTACATCGACTATCCCTTGCCCCATCGCCGTCCGCCTTCCCGCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGCCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCACGAGTTTTTAAGCCGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGTTGTTTCAAGCATCTACACTCTAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGGAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGGTATGCCTTTTCTTTTCTAAAACTTGCTTCAAATCTTGATTCGTATTATGTTATCAGCCTGTTCTTCTTCGTATCATCGTTTTTCATTAATATTGACTGTGCATTGACAGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTATAATGAGTTTTCATTCATGGAGAAACTTCTGAGTCTATGGTATTTTTTTGGTAAATTGTTTGGTTAATTAGTGACAATAAGCTCACTGGCTAAAAGAATAACCATTTTACCTTAAATAGAATCTGGATTTTAGAACTGAGTTCGATTAAGTTCATATAACCGGGATTATATAGCGTCATTTAAAATAATTTATCTATGCTCAGTTTAAGCCCGTACGTTTTCTTAATGTATCAACTTTGATAGGTAGTTATTTTATGGAACCATATTGACACTATTAGGTAATTAGTGTGTTAAGAAGGTAGTTGTATTCTCGAAAAGGACACCATGTGTTTGCAGATTGAGCTTCTTATCATCGTTATTGTAAATGCACATGTAGGAGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATGTTAGTTCATATACTCACATTGGTAAAACTCTTGTTGAGAATTTTCAACTTCGAGGGAATTTAGATTCTTAACTTATGTTTCTGATTTCGTAGTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGCAAGTTTTTTACCTGGTATTTTTTATTTGCATTTTGCTATTTACTTCTATCTGCAGTATTTTTTAATATGCTACGTTCTCCTAGTGCCATAAAATCGTGTATTGATTTAAATTTTTAAAAGGAACGTTATTGATCAGAAAAGGGAGATTTTAAGATTGATGGATCCCAGAGATCATTTCTATATCATTCATGTCAATCTTAATATTAGATTTTATTATCACCTCTTGACTTGATTGGGGTTTCAGTTATCAATTAAATTTTTATTTGTTTCAAGAAAAAAAATTGTTTTTCTTTCAACCTCATCTTGTTTGGAAGAGTGAAATTGGTGCTTAATCCTAAAACTGTGATATGTTTTTGTTGAACTTACTGATCAAGTACATCAATGAAGAAATAACATAATTTAGAAGGCGGCTCTTGCACTGAGAATGTGTTTGACTTGTATTTGAATATGCCACTTATATAAAACGTTTGGTTTCTGAGGTATTGTTTCTGTATTTTCAGGAAACCGTCCAAGTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAGCTGAATTTATGTGAAACTTGTCATGCATATTGGTGCTAAATATCATCTTTGAGTCATTAAATGGATCCATGACAGGTATCTGAGGTGCCACCGACCTTAGAACAACGTCTTGTAGAATCAGCACGTCCGATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGGTATGTATGAGATTATCGTATCAAATTACCTAGCTGAAACATGTTTGGTACTTGCTCACAATTTTTCTGTAGCGCAAGCGTGGTGATCTGGATATGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGTTGGTATTATTTTTTCCTTCAGAATTTCTTATATATTCTAACTAGATCATATGAAATTACAGTGAATTTGATGCTCCTTTCTTGTATTCACATTATTGATGAGAAAGAAAATAAGGCATGACAAATGCCCACCCCTTGGCCCAGTTTCGGTTGTACAAGCGGGCAGAGCATTATTTTCAAAAAAAGAAGGCATGACAAATATGAACAATTTAATTTAACTCCCTTGAAACCTATTGATAGAGTACTTCTATGTAATGGGAAAAAAAAGCACAACCTAGATGAGGGACCCGAGCCTATGGAGCACAAATCAAACGAAAGGCCCCGAATATAAAATAATGAGGAGAGAAGGCATGTTACTGAAGGATTTGCGTAGAGCACTCCAAATATTGGAGGTTGTATACTGTATGTTTTATCAAGTTGGTAGCTGACACATGCTAACTTTTTACAAAAATGAGGGGAAAACTGTACTTAAATTCACAAGTTGTTAAACTCAAAATATCTCTGTCTGTTGAATATTTGATAAATCATTAACTTGATTTTAAATTAACTGTTCATCCCATGCTAACTCCCCCCGATATCTTATGGTCAATTCAAATGGTAATTGCATCAATATCTTACTATGGCTCTAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAACGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTATAATGTTTGTGTAGATTTCTGAAGGAGTTTAGTTATGCACGTATTTGATCTTGATGCACATTGATCGTATAAAAATATATGTTGTGAGTTGGTACTAGAAGGAATTGTTTGGGCGCTCTTTTGGAGGACAATTCTCTATTTTTAAAAATAAAAATATTAGTGAAAGCATGTTGGCTTATTTACTTTTTACAGGCTGTTTTCTCATGTTTTCTTTTAGTTTGTTTTTAAAGATGATTTGATTCTTAAAACAATTGAAATTATTTTTTCTAGAACTGTTGTCTCGTAAATAATGATCAAGTGCAGAACAAGGCTAATCTTTCTGAGCCTTCTCCTTCAAATTTTAAAGTTAAAAGCAGAAAACTGTTTTTCAAGATGCCTTTCAGGATTCATATTTGATTTTATCATGTAATGAATTCATTTACTTCAATGCAGACAATAATGACCTTTGCAAAGCCTGCCAGTACAGTAAGGCAAAAAAATGAGAATTTTTGGGGCACTTTATCAGTATCATTAACCAGCATGCACATTATATTTTGTTCTCTCTTTTTACGTTCTTTCCTGTTCCACCTCTTTTACATAATATGTTTCTTAAACTGAGTAATAGTTTCTTGGCTTTTATCTAGACTCCTTTTCTTGTTATGTTACTCTATGATGGAGGTCTAGTTGGATGCTTGGTTCATGATACATTTTGTTAAGACTAAATCATGAACGATAGGCCTTAAGAAATATAAGAAAATGATACATGATTTGGAAACTAGCGCAGAAATGTGTTTTCCTTTACCAATTACGTCCACTTTTATGTCTCCTGTCCTAAAAGTTCAATTGTTTGCAGTTCCTTTGTCACTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGAATGGAAGATTATAAAATTAGTATGTTCACCCTCTGTTAAACTAAGTTTTCCCGATGTGTTTAATTTTCACACTTCCCATGTGATTTACTTTAAGTTTCTTCTAAAAACCTTTGCTTGCCCAGATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTTCTCTCTCCCTCTCATTTATTTAGTGAAAAATACACCTTTGTTCTCTGAAATTTGAGAAATTACATGTCTTCGTTCCTAAATTTTAAAAATGACATCTTATTGCTTGCGCAACCAGTTGATTGAAATCTCTTATCTGAGATAGTTTGTTAGCAAGCATGATTCATCTCTTATCCCTTGCACTTACAGACATGGAATAATTTATAATGAACTAACTTCAATTTTCTTGATTGCAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAGGAGTTATTGGTCGGTCAGTTGCTATCAAGGTTGTCTAGCTACCAAAAAAGCATGTATGCATTTGTAATATGCCTTTCATTTTATCTAGAAATGTATGTAATTTACACGTGAATGCAACTAATACATAATTGAACATCCATATAGAATATACAGTTGATTTTAAAATTCAACTTGAGCGTTAATTAAGGAGTAAAAACCTAATAATATAATGGGCTGACCTTACCAATAGTTGTCTTTTTAATCTAGTGAAGATTACATGGAATTGTTATTTTTTGTACTTAGTATTCTGGAATTGACTATTGGTAAAAAAAGAAATTGTTTATTTAATTTACAGATTTTCCATGTCTTTTTTCTGTAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGGTAAACATCTTTGCTCTCTATGCATGTGTTTTTGCATCCAAATTCATATATTTAGATCATGAAGCAAAGATACTGTACTTGTTTTTTTTCCCAATAAGAAGCATGACATTATTCATTGATAAAGTTGAAAAACACAAAGTAGGACCATTGGACCTAACTAGAAAAAATATTGAAGGATAGTTAATTTTTGATCAGGTATCATTATGTTTTCTTATCAGAATTGGTTGTAGTTTAATTAGCAACTTTGCACATCTTTGATATGAATTTTCTTTTTAGACTTATTATTATGCATGTACAAATCTAATTCGTTTTATTGTTTTGCCCGTACTTATCTTTTATTTTATTTTTTATATTTGTGTATCTATAAGCCTATATCATACCACATCTAATAAGAATGTGTTTTGTCTCTATTTCTTCATTACTGTGTATCATCTTGTACCTACACTGGCTAGACATCTCTTTTTCCACTTGACCGATTTACATTGTTAACCTTTTTGGGGGATTCATCCTAGTAACACAATCTCTCTTTTGTTGCAGAAAGTAGCTATAACAATACCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGGTTAGTGTGCACAACATTCTAATAAATTCATATATGCAATTGTAATGGTATTAGGTTCTATTAGATTTCTCTAACAGAGATATGGTCCTAGTGTGCTTCTGATCACTGATAACTTTATCTTCAGTCATCTTATTCACGTGTTTCCTTCCTACTAGAGAAATCGAGTCTTACCTTTTGATGTGGTTTATCAGGGCAGAACCTAAAATTGCATTTATCCTACCGGTTTTAGTTCTCTAAGAGGCCAAATGCAGCTTGCTTCCTAATTTTATTAATAATGTCCATTTTAAAAATCACCTTTTGGTCCCATGTCCCTGAATTTTAACAATTTAGTTTTTGAACTTTGATTTGTAACAATATAGTACATTCAATTTTGCAACAATTTTATCTTTGTATTTTCAAGTTCTAACCATTTAATCTCTATTGAAAATTTAATAGAATTTTTTACATGGGTAGATCAATAAACTAATTAGGGACCCAATAGCTTTATAAAGTATAAAGTCTAAACCCTAAATTCAAATTTAGGGCCAAACCATTAGTTCCTCTTTCTCTCTTGATGAAGCTCTAGCATCGAATAATACAATGGCTAAAGCTTGATTGATATGGGGCCGATGGCTAATTCCTCTTCCATAAACAGCAAACGTCAGAATTCACCATCAGTTATTCCTATGTCTACAGAGGCTTGAAGTCCTCAAAATGTTTGAAGTGCAAAAACGATTTAATTAAGTCTATCCATCCAAAAAACTAAGCTTTTAATGAAGTTGTTCTAAAGGACCATTCCTTCCATGTCTGTGTGTGTATGTGGGAATGTTAAAAAACTGACTCCTTGCTGTGGCAACCAACTCTTTTGCAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATATGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAGAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAATTTCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGTCAAATGGCCTTCCTGAGTATACTTTTATTATTACTATTATTATTATTAATAATAGGAAGTTTTTAATGTATCACATCATTGACAGATTTTTCTGTGACAATAGAGCCTTGGTTTTATTTAAGTCTAAATAGTATG

mRNA sequence

AATAGCTACATCGACTATCCCTTGCCCCATCGCCGTCCGCCTTCCCGCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGCCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCACGAGTTTTTAAGCCGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGTTGTTTCAAGCATCTACACTCTAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGGAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGAGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGCAAGTTTTTTACCTGGTATTTTTTATTTGCATTTTGCTATTTACTTCTATCTGCAGTATTTTTTAATATGCTACGAAACCGTCCAAGTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAACAACGTCTTGTAGAATCAGCACGTCCGATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGTGGTGATCTGGATATGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAACGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGAATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAATACCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATATGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAGAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAATTTCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGTCAAATGGCCTTCCTGAGTATACTTTTATTATTACTATTATTATTATTAATAATAGGAAGTTTTTAATGTATCACATCATTGACAGATTTTTCTGTGACAATAGAGCCTTGGTTTTATTTAAGTCTAAATAGTATG

Coding sequence (CDS)

ATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGAGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGCAAGTTTTTTACCTGGTATTTTTTATTTGCATTTTGCTATTTACTTCTATCTGCAGTATTTTTTAATATGCTACGAAACCGTCCAAGTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAACAACGTCTTGTAGAATCAGCACGTCCGATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGTGGTGATCTGGATATGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAACGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGTAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGAATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAATACCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAA

Protein sequence

MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF

Homology

[Close]

BLAST of Cp4.1LG09g00940.1 vs. Swiss-Prot
Match: RPC3_HUMAN (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens GN=POLR3C PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-24
Identity = 128/520 (24.62%), Postives = 224/520 (43.08%), Query Frame = 1


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +L+QHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ +++   ++ L  D   E ++E L
Sbjct: 62  LV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVN 183
           L NG+L+M  ++    +R   +   GK   +                           V+
Sbjct: 122 LLNGKLTMSAVVKKVADRLTETMEDGKTMDY-------------------------AEVS 181

Query: 184 ESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPM 243
            + ++L + HFV+RCP+  PT        PPP    A    ++E    L  +L       
Sbjct: 182 NTFVRLADTHFVQRCPS-VPTTENSDPGPPPP----APTLVINEKDMYLVPKL------- 241

Query: 244 EVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLR 303
                 IG+        E  +     KR +   D  +   D DG I W+AN D F +  R
Sbjct: 242 ----SLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPD-DG-IYWQANLDRFHQHFR 301

Query: 304 HKACIEHVRSQFDDGAVNVLSAIL---EATRSSEKIVKTEITVPLSLDNIYE------EV 363
            +A +  V ++ D  +  ++  +L   E T SS        T PLS + I+        +
Sbjct: 302 DQAIVSAVANRMDQTSSEIVRTMLRMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNI 361

Query: 364 MKNEVGRSMTL--DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAY 423
            K  + + +TL  D     +   G SG   Y INL K +       +ES+V +R+G    
Sbjct: 362 SKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCA 421

Query: 424 RMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHS---LC 483
           R+FR + +    +E +++ D A +   EA  +LY++  + ++ ++++  T P H+     
Sbjct: 422 RIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTF 461

Query: 484 LLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 506
            L+ V+  +    +L   Y +  NL  R+ +E +++K LL
Sbjct: 482 YLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLL 461

[Close]

BLAST of Cp4.1LG09g00940.1 vs. Swiss-Prot
Match: RPC3_BOVIN (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus GN=POLR3C PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-23
Identity = 128/519 (24.66%), Postives = 223/519 (42.97%), Query Frame = 1


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +LIQHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  + +L  +R+ +++  A + L  D   E ++E L
Sbjct: 62  LV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVN 183
           L NG+++M  ++    +R   +   GK   +                           V+
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDY-------------------------AEVS 181

Query: 184 ESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPM 243
            + ++L++ HFV+RCP    T +      PP     A    VSE    L  +L       
Sbjct: 182 NTFVRLVDTHFVQRCPLVPATENSDTGPPPP-----APTLVVSEKDMYLVPKL------- 241

Query: 244 EVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLR 303
                 IG+        E  +     KR +   D  +   D DG I W+AN D F +  R
Sbjct: 242 ----SLIGKGKRRRSSDEDATGEPKAKRPKQTTDNKEPIPD-DG-IYWQANLDRFHQHFR 301

Query: 304 HKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKT--EITVPLSLDNIYE------EVM 363
            +A +  V ++ D  +  ++  +L   R SE    +    T PLS + I+        + 
Sbjct: 302 DQAIVSAVANRMDQTSSEIVRTML---RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNIS 361

Query: 364 KNEVGRSMTL--DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYR 423
           K  + + +TL  D     +   G SG   Y INL K +       +ES+V +R+G    R
Sbjct: 362 KQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCAR 421

Query: 424 MFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHS---LCL 483
           +FR + +   L E +++ D A +   EA  +LY++  + ++ ++++  T P H+      
Sbjct: 422 IFRLVLQKKHL-EQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFY 461

Query: 484 LWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 506
           L+ V+  +    +L   Y +  NL  R+ +E +++K LL
Sbjct: 482 LYTVNILSAARMLLHRCYKSVANLIERRQFETKENKRLL 461

[Close]

BLAST of Cp4.1LG09g00940.1 vs. Swiss-Prot
Match: RPC3_DANRE (DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio GN=polr3c PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-20
Identity = 114/505 (22.57%), Postives = 210/505 (41.58%), Query Frame = 1


Query: 14  IITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTE 73
           ++  HFG++V  V   L+R G LTLR L   T+L+   +  SL +L+QH         T 
Sbjct: 12  LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQHG------MCTF 71

Query: 74  GEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ 133
           G     P    +Y     +ILH +R+ +++  A + L  D   E ++E +LQ G+++M  
Sbjct: 72  GPGRRGPAGPVEYHINCEHILHMLRYPRYIYTA-KSLYGDTG-ELIVEEILQRGQMTMSS 131

Query: 134 IIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSP-DVVNESLLKLLNAHFVE 193
            ++                       +   +  NM   +    + V  +  +L+  HF++
Sbjct: 132 TVK----------------------TVADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQ 191

Query: 194 RCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTE 253
           RCP              P     +     +E PP + Q     + P     + +   +  
Sbjct: 192 RCP--------------PMASAESSGTGSAETPPAVTQPSNPESHP---DCYKLPYISLS 251

Query: 254 AEESEHYSSISGQKRKRGDLDMIQESGD-ADGIILWRANFDEFIRCLRHKACIEHVRSQF 313
                  SS  G+  +R       +S +  D  I W+ NF+ F    R +A I  V  + 
Sbjct: 252 GHGKRRRSSEDGEADQRAAKKAKTDSSECGDEGIHWQVNFERFHLHFRDQAIISAVSCKL 311

Query: 314 DDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKN-EVGR-------SMTLDR 373
           D  +  ++  +L  +  +        T  LS + I+  +  N  + R       ++ +D 
Sbjct: 312 DQTSGEIVRTMLRMSEVTTS-ANAAFTQALSANEIFRALPSNYNIARPILDQYLTLLVDD 371

Query: 374 VEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVET 433
               +   G SG   + +NL + +       +ES+V +R+G  + R+FR L +   L E 
Sbjct: 372 PMEFVGKAGDSGGGMFVVNLHRALANLARATLESVVQERFGSRSARIFRLLLRKRHL-EQ 431

Query: 434 EKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHS---LCLLWRVDRYNLWEHVL 493
           +++ D A +   EA ++LY L  +  + ++++  T P H+      L+ V++      +L
Sbjct: 432 KQVEDFAMIPAKEAKEMLYTLLSENLVQLQEIPKT-PDHAPSRTFYLYAVNQLPTARLLL 466

Query: 494 DEMYHASLNLQLRQAYEMEQDKELL 506
              Y    NL  R+ YE +++K LL
Sbjct: 492 QHCYKTVGNLIERRLYETKENKRLL 466

[Close]

BLAST of Cp4.1LG09g00940.1 vs. Swiss-Prot
Match: RPC3_DICDI (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum GN=polr3c PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-10
Identity = 56/188 (29.79%), Postives = 90/188 (47.87%), Query Frame = 1


Query: 6   YGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTE----LSSSQINNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L++RG  + +++ +       L+  +I   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTAVTEGEF-----GDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKD 125
           HN V   +    +T+ E      G+   +D+ Y A+  N +HR+RF KF+     K  K 
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYI--KHSKG 121

Query: 126 KDCEELLEGLLQNGRLSMEQIIERAKSSKHAGKF-----FTWYFLFAFCYLLLSAVFFNM 177
            +   +LE L+ +GRL M+ +I++A   +    F      T  F   F  L++       
Sbjct: 122 DEAAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRA 181

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL
Match: A0A0A0LBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182170 PE=4 SV=1)

HSP 1 Score: 865.5 bits (2235), Expect = 3.4e-248
Identity = 441/547 (80.62%), Postives = 485/547 (88.67%), Query Frame = 1


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNE 180
           EGLLQNGRLSMEQ++ERA+SS  AG                         N P  DVV++
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAG-------------------------NHPISDVVHD 180

Query: 181 SLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPME 240
           SL KLLNAHFVERCPAPEPTLSP+VEE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+E
Sbjct: 181 SLFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVE 240

Query: 241 VIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRH 300
           V+RFS+G+TN EAE+SEH+S ISGQKRK  DL++ Q+SGDADG ILWRAN+DEFIRCLRH
Sbjct: 241 VLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRH 300

Query: 301 KACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360
           KACIEHVRSQFDDG VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT
Sbjct: 301 KACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360

Query: 361 LDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGL 420
           LDRVEASL+ALGC GM+DYKINL++IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGL
Sbjct: 361 LDRVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGL 420

Query: 421 VETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVL 480
           VETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVL
Sbjct: 421 VETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVL 480

Query: 481 DEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDA 540
           DEMYHASLNLQLR A+E+E++KELL+LP D    PL K+ +   NVR LL SSL+KLDDA
Sbjct: 481 DEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDA 521

Query: 541 LMLFHDF 548
           LMLFHDF
Sbjct: 541 LMLFHDF 521

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL
Match: E0CV20_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g00450 PE=4 SV=1)

HSP 1 Score: 589.0 bits (1517), Expect = 6.1e-165
Identity = 314/552 (56.88%), Postives = 408/552 (73.91%), Query Frame = 1


Query: 3   STQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQH 62
           +TQYG++ AVH+I++HFGNLVAKVC+ LLR+G LTL  ++RFTEL   Q+ + +L+LIQH
Sbjct: 2   ATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQH 61

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           NCVQAF    E  FG+AP+  TQY+ALF NILHRMRF+KFLAI SE+L  DK+CEE+LEG
Sbjct: 62  NCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEEL--DKECEEILEG 121

Query: 123 LLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESL 182
           LLQ+GRL++EQI++RAKS++  G+                             D + ES 
Sbjct: 122 LLQHGRLTLEQILDRAKSNQSEGEPVV-------------------------QDALRESF 181

Query: 183 LKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVI 242
           LKL+ AHFVERCPA EP L+P  EE+ P RKRGAK+AK+ E P T+EQR + +A PM+  
Sbjct: 182 LKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAK 241

Query: 243 RFS-IGETNTEAEESEHYSSISGQKRKRGDLDMIQESG-DADGIILWRANFDEFIRCLRH 302
           RFS I  T T+ ++S + ++  G+KRK+  L++ +E+G   +  +LWRANF+EF+RCLRH
Sbjct: 242 RFSVIINTGTDVDDSPNVTA--GEKRKQDALELDKETGASCEKDVLWRANFEEFVRCLRH 301

Query: 303 KACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 362
           KACI +V+++ DDGA  VLSA+LEATRS EK VKTE +VPLS+D I+E VMK+E GRSMT
Sbjct: 302 KACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMT 361

Query: 363 LDRVEASLSALGCS-----GMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS 422
           L+RV  SL  LGC+       E Y ++L+ IIE AQ DEVESI LKRYGRDAYR+FR LS
Sbjct: 362 LERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLS 421

Query: 423 KTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNL 482
           K+  L+ET+KISD+ FV+K +  KILY+LWKDEYL MEK+ +   R S  LLW+V +  L
Sbjct: 422 KSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTL 481

Query: 483 WEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLL 542
           W HVL+EMYH++LNL LR AYE+EQ++E++ LP +KR G L  R+ RLR VRILLESSL+
Sbjct: 482 WGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLM 524

Query: 543 KLDDALMLFHDF 548
           KLDDA+MLF+DF
Sbjct: 542 KLDDAIMLFNDF 524

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL
Match: V4RLV1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004721mg PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 5.4e-161
Identity = 306/553 (55.33%), Postives = 408/553 (73.78%), Query Frame = 1


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           T+YG K+AVH+IT HFG+LVAKVCE LLR+GPLT + + R+TELS  Q+ N+LL+LIQ N
Sbjct: 3   TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
           CVQAFT      F D PKA+TQY+ LF NILHR+RF+KFL I S+  E D+ C EL++GL
Sbjct: 63  CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQ--EFDQQCVELVQGL 122

Query: 124 LQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESLL 183
           L++GRL+++Q+ +RAKSS+  G                         N    D + E+L+
Sbjct: 123 LEHGRLTLKQMFDRAKSSEKEG-------------------------NLVDLDSLRETLV 182

Query: 184 KLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIR 243
           KL+ AH+VERCPA EP L P  EE+ P RK+G+K+AK    P T+EQ++VE+A PME +R
Sbjct: 183 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 242

Query: 244 FSIGETNTEA---EESEHYSSISGQKRKRGDLDMIQESGDAD-GIILWRANFDEFIRCLR 303
           FS+  TN E+   E+ ++ ++++  ++++ D+  + E G AD   +++RANF+ FIR LR
Sbjct: 243 FSV-VTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLR 302

Query: 304 HKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSM 363
           HK CI+HVR+  DDGA NVLSA+L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+M
Sbjct: 303 HKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM 362

Query: 364 TLDRVEASLSALG-----CSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFL 423
           TLD V ASL  LG      +  + Y I+ +KIIE AQ +EVES+V KRYGRDAYR+FR L
Sbjct: 363 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 422

Query: 424 SKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYN 483
           SK+G L+ET+KISD+ FV+K +APKILY+LWKD YL MEK+ +T  R S  LLW+V+R  
Sbjct: 423 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 482

Query: 484 LWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSL 543
           LW+HVLDEM+HA+LNL LR +YE++++KELLNLP DKR GPL+ RYNR+R VRILLESS 
Sbjct: 483 LWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQ 527

Query: 544 LKLDDALMLFHDF 548
           +KLDDA++LFHDF
Sbjct: 543 MKLDDAILLFHDF 527

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL
Match: A0A067EAC9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009725mg PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 5.4e-161
Identity = 306/553 (55.33%), Postives = 408/553 (73.78%), Query Frame = 1


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           T+YG K+AVH+IT HFG+LVAKVCE LLR+GPLT + + R+TELS  Q+ N+LL+LIQ N
Sbjct: 3   TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
           CVQAFT      F D PKA+TQY+ LF NILHR+RF+KFL I S+  E D+ C EL++GL
Sbjct: 63  CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQ--EFDQQCVELVQGL 122

Query: 124 LQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESLL 183
           L++GRL+++Q+ +RAKSS+  G                         N    D + E+L+
Sbjct: 123 LEHGRLTLKQMFDRAKSSEKEG-------------------------NLVDLDSLRETLV 182

Query: 184 KLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIR 243
           KL+ AH+VERCPA EP L P  EE+ P RK+G+K+AK    P T+EQ++VE+A PME +R
Sbjct: 183 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 242

Query: 244 FSIGETNTEA---EESEHYSSISGQKRKRGDLDMIQESGDAD-GIILWRANFDEFIRCLR 303
           FS+  TN E+   E+ ++ ++++  ++++ D+  + E G AD   +++RANF+ FIR LR
Sbjct: 243 FSV-VTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLR 302

Query: 304 HKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSM 363
           HK CI+HVR+  DDGA NVLSA+L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+M
Sbjct: 303 HKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM 362

Query: 364 TLDRVEASLSALG-----CSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFL 423
           TLD V ASL  LG      +  + Y I+ +KIIE AQ +EVES+V KRYGRDAYR+FR L
Sbjct: 363 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 422

Query: 424 SKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYN 483
           SK+G L+ET+KISD+ FV+K +APKILY+LWKD YL MEK+ +T  R S  LLW+V+R  
Sbjct: 423 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 482

Query: 484 LWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSL 543
           LW+HVLDEM+HA+LNL LR +YE++++KELLNLP DKR GPL+ RYNR+R VRILLESS 
Sbjct: 483 LWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQ 527

Query: 544 LKLDDALMLFHDF 548
           +KLDDA++LFHDF
Sbjct: 543 MKLDDAILLFHDF 527

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL
Match: A0A067EM62_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009725mg PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 2.9e-159
Identity = 310/554 (55.96%), Postives = 405/554 (73.10%), Query Frame = 1


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           T+YG K+AVH+IT HFG+LVAKVCE LLR+GPLT + + R+TELS  Q+ N+LL+LIQ N
Sbjct: 3   TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
           CVQAFT     E  D PKA+TQY+ LF NILHR+RF+KFL I S+  E D+ C EL++GL
Sbjct: 63  CVQAFTT----EQPDGPKANTQYVVLFDNILHRVRFAKFLTILSQ--EFDQQCVELVQGL 122

Query: 124 LQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESLL 183
           L++GRL+++Q+ +RAKSS+  G                         N    D + E+L+
Sbjct: 123 LEHGRLTLKQMFDRAKSSEKEG-------------------------NLVDLDSLRETLV 182

Query: 184 KLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIR 243
           KL+ AH+VERCPA EP L P  EE+ P RK+G+K+AK    P T+EQ++VE+A PME +R
Sbjct: 183 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 242

Query: 244 FSIGETNTEAEESEHYSSIS----GQKRKRGDLDMIQESGDADG-IILWRANFDEFIRCL 303
           FS+  TN E++  E   + +    G+KRK   L++  E G AD   +++RANF+ FIR L
Sbjct: 243 FSV-VTNVESDVGEKEKNSNNVTPGEKRKHDVLEL-DECGVADEQSVVYRANFEGFIRRL 302

Query: 304 RHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRS 363
           RHK CI+HVR+  DDGA NVLSA+L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+
Sbjct: 303 RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN 362

Query: 364 MTLDRVEASLSALG-----CSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRF 423
           MTLD V ASL  LG      +  + Y I+ +KIIE AQ +EVES+V KRYGRDAYR+FR 
Sbjct: 363 MTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRL 422

Query: 424 LSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRY 483
           LSK+G L+ET+KISD+ FV+K +APKILY+LWKD YL MEK+ +T  R S  LLW+V+R 
Sbjct: 423 LSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 482

Query: 484 NLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESS 543
            LW+HVLDEM+HA+LNL LR +YE++++KELLNLP DKR GPL+ RYNR+R VRILLESS
Sbjct: 483 ILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESS 523

Query: 544 LLKLDDALMLFHDF 548
            +KLDDA++LFHDF
Sbjct: 543 QMKLDDAILLFHDF 523

[Close]

BLAST of Cp4.1LG09g00940.1 vs. TAIR10
Match: AT3G49000.1 (AT3G49000.1 RNA polymerase III subunit RPC82 family protein)

HSP 1 Score: 448.0 bits (1151), Expect = 8.5e-126
Identity = 249/561 (44.39%), Postives = 370/561 (65.95%), Query Frame = 1


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTE--LSSSQINNSLLI 60
           M+ +++GI YA+HIIT  FG++V+KVCE LLR+GPL+ R + R  E  ++ +++ + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEE 120
           LIQHNCVQAF+   E   G   KA  QY+ LF+NILHR+R++KF  I +E+L  D  C  
Sbjct: 61  LIQHNCVQAFSI--EPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVV 180
           +L+GLL NGRL++ Q IER + S                             N    + +
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDSG----------------------------NTIGSEAI 180

Query: 181 NESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARP 240
            +SL KL+ A FVER P+PEP L  +  E+ P ++RGAKAAK+ + P TLE+++VE+A P
Sbjct: 181 RDSLQKLVAARFVERIPSPEPVLGNK--EKEPAKRRGAKAAKILKEPETLEEQVVEAATP 240

Query: 241 MEVIRFS-IGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRC 300
           ++ IRF  I E ++ +  ++  S+I+  KRK+ D+D    + D+   ++WR NF+EFI  
Sbjct: 241 VDAIRFPLIFEEDSNSSLADDNSNITEGKRKQRDVD----TSDSSSGVIWRPNFEEFIHR 300

Query: 301 LRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGR 360
           LRHKAC+E V+ + D+G   VL A+LE  RS EK VKT+ + P+S+ +IYEEV+K E GR
Sbjct: 301 LRHKACVEIVKERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGR 360

Query: 361 SMTLDRVEASLSALGCSGM----------EDYKINLQKIIEQAQIDEVESIVLKRYGRDA 420
           +M  +RVEA L  L  +            + Y ++ + II  AQ DE+E++V++RYG++A
Sbjct: 361 TMLQERVEACLDQLSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEA 420

Query: 421 YRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIP-RHSLCL 480
           +RMFR+LS+ G  VET+KI+D+A  +K + P+ L ++WKD YL+M+K+A+T P  ++  L
Sbjct: 421 FRMFRYLSQEGRFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFL 480

Query: 481 LWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNV 540
           LW+V++  +   +LDEMYHASLNL LR A+E+E +KELL LP DK  GPL++R  +++  
Sbjct: 481 LWKVNKLIVTTQMLDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAK 523

Query: 541 RILLESSLLKLDDALMLFHDF 548
           R+LL S++ KLDDA+MLFHDF
Sbjct: 541 RLLLSSTMFKLDDAIMLFHDF 523

[Close]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr
Match: gi|659077489|ref|XP_008439232.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 872.8 bits (2254), Expect = 3.0e-250
Identity = 441/547 (80.62%), Postives = 485/547 (88.67%), Query Frame = 1


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNE 180
           EGLLQNGRLSMEQ++ERA+SS  AG                         NRP PDVV++
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAG-------------------------NRPIPDVVHD 180

Query: 181 SLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPME 240
           SL KLLNAHFVERCPAPEPTLSP+VEEQPPPRKRGAKAAK+ EVP TLEQRL+E+ARP+E
Sbjct: 181 SLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVE 240

Query: 241 VIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRH 300
           V+RFS+G+TN EAE+SEHYS ISGQKRK  +L++ Q+SG ADG ILWRAN+DEFIRCLRH
Sbjct: 241 VLRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRH 300

Query: 301 KACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360
           KAC+EHVRSQFDDG VNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT
Sbjct: 301 KACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360

Query: 361 LDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGL 420
           LDRVEASL+ALGC GM+DYKINL++I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGL
Sbjct: 361 LDRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGL 420

Query: 421 VETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVL 480
           VETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVAIT+PRHSLCLLWRVDRYNLWEHVL
Sbjct: 421 VETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVL 480

Query: 481 DEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDA 540
           DEMYHASLNLQLR A+E+E++KELL+LP D    PL K+ +    VR LL SSL+KLDDA
Sbjct: 481 DEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDA 522

Query: 541 LMLFHDF 548
           LMLFHDF
Sbjct: 541 LMLFHDF 522

[Close]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr
Match: gi|778679586|ref|XP_011651154.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus])

HSP 1 Score: 865.5 bits (2235), Expect = 4.9e-248
Identity = 441/547 (80.62%), Postives = 485/547 (88.67%), Query Frame = 1


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNE 180
           EGLLQNGRLSMEQ++ERA+SS  AG                         N P  DVV++
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAG-------------------------NHPISDVVHD 180

Query: 181 SLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPME 240
           SL KLLNAHFVERCPAPEPTLSP+VEE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+E
Sbjct: 181 SLFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVE 240

Query: 241 VIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRH 300
           V+RFS+G+TN EAE+SEH+S ISGQKRK  DL++ Q+SGDADG ILWRAN+DEFIRCLRH
Sbjct: 241 VLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRH 300

Query: 301 KACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360
           KACIEHVRSQFDDG VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT
Sbjct: 301 KACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 360

Query: 361 LDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGL 420
           LDRVEASL+ALGC GM+DYKINL++IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGL
Sbjct: 361 LDRVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGL 420

Query: 421 VETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVL 480
           VETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVL
Sbjct: 421 VETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVL 480

Query: 481 DEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDA 540
           DEMYHASLNLQLR A+E+E++KELL+LP D    PL K+ +   NVR LL SSL+KLDDA
Sbjct: 481 DEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDA 521

Query: 541 LMLFHDF 548
           LMLFHDF
Sbjct: 541 LMLFHDF 521

[Close]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr
Match: gi|659077493|ref|XP_008439234.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo])

HSP 1 Score: 700.7 bits (1807), Expect = 2.1e-198
Identity = 355/451 (78.71%), Postives = 394/451 (87.36%), Query Frame = 1


Query: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAF 156
           MRFSKFLAIAS+KL +DK+C+ELLEGLLQNGRLSMEQ++ERA+SS  AG           
Sbjct: 1   MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAG----------- 60

Query: 157 CYLLLSAVFFNMLRNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGA 216
                         NRP PDVV++SL KLLNAHFVERCPAPEPTLSP+VEEQPPPRKRGA
Sbjct: 61  --------------NRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGA 120

Query: 217 KAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQ 276
           KAAK+ EVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEHYS ISGQKRK  +L++ Q
Sbjct: 121 KAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQ 180

Query: 277 ESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTE 336
           +SG ADG ILWRAN+DEFIRCLRHKAC+EHVRSQFDDG VNVLSA LEATRSSEKIVKTE
Sbjct: 181 DSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTE 240

Query: 337 ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVE 396
           ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++I+EQAQ DEVE
Sbjct: 241 ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVE 300

Query: 397 SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVA 456
           SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVA
Sbjct: 301 SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA 360

Query: 457 ITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPL 516
           IT+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL+LP D    PL
Sbjct: 361 ITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPL 420

Query: 517 EKRYNRLRNVRILLESSLLKLDDALMLFHDF 548
            K+ +    VR LL SSL+KLDDALMLFHDF
Sbjct: 421 VKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 426

[Close]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr
Match: gi|778679588|ref|XP_011651155.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis sativus])

HSP 1 Score: 696.0 bits (1795), Expect = 5.1e-197
Identity = 356/451 (78.94%), Postives = 395/451 (87.58%), Query Frame = 1


Query: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAF 156
           MRFSKF+AIAS+KL +DK+C+ELLEGLLQNGRLSMEQ++ERA+SS  AG           
Sbjct: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAG----------- 60

Query: 157 CYLLLSAVFFNMLRNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGA 216
                         N P  DVV++SL KLLNAHFVERCPAPEPTLSP+VEE PPPRKRGA
Sbjct: 61  --------------NHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGA 120

Query: 217 KAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQ 276
           KAAK+SEVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEH+S ISGQKRK  DL++ Q
Sbjct: 121 KAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQ 180

Query: 277 ESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTE 336
           +SGDADG ILWRAN+DEFIRCLRHKACIEHVRSQFDDG VNVLSAILEATRSSEKIVKTE
Sbjct: 181 DSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTE 240

Query: 337 ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVE 396
           ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++IIEQAQ DEVE
Sbjct: 241 ITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRIIEQAQTDEVE 300

Query: 397 SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVA 456
           SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVA
Sbjct: 301 SIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA 360

Query: 457 ITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPL 516
           +T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL+LP D    PL
Sbjct: 361 LTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPL 420

Query: 517 EKRYNRLRNVRILLESSLLKLDDALMLFHDF 548
            K+ +   NVR LL SSL+KLDDALMLFHDF
Sbjct: 421 VKKMHHFENVRNLLRSSLVKLDDALMLFHDF 425

[Close]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr
Match: gi|731424113|ref|XP_010662742.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Vitis vinifera])

HSP 1 Score: 589.0 bits (1517), Expect = 8.8e-165
Identity = 314/552 (56.88%), Postives = 408/552 (73.91%), Query Frame = 1


Query: 3   STQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQH 62
           +TQYG++ AVH+I++HFGNLVAKVC+ LLR+G LTL  ++RFTEL   Q+ + +L+LIQH
Sbjct: 2   ATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQH 61

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           NCVQAF    E  FG+AP+  TQY+ALF NILHRMRF+KFLAI SE+L  DK+CEE+LEG
Sbjct: 62  NCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEEL--DKECEEILEG 121

Query: 123 LLQNGRLSMEQIIERAKSSKHAGKFFTWYFLFAFCYLLLSAVFFNMLRNRPSPDVVNESL 182
           LLQ+GRL++EQI++RAKS++  G+                             D + ES 
Sbjct: 122 LLQHGRLTLEQILDRAKSNQSEGEPVV-------------------------QDALRESF 181

Query: 183 LKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVI 242
           LKL+ AHFVERCPA EP L+P  EE+ P RKRGAK+AK+ E P T+EQR + +A PM+  
Sbjct: 182 LKLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAK 241

Query: 243 RFS-IGETNTEAEESEHYSSISGQKRKRGDLDMIQESG-DADGIILWRANFDEFIRCLRH 302
           RFS I  T T+ ++S + ++  G+KRK+  L++ +E+G   +  +LWRANF+EF+RCLRH
Sbjct: 242 RFSVIINTGTDVDDSPNVTA--GEKRKQDALELDKETGASCEKDVLWRANFEEFVRCLRH 301

Query: 303 KACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMT 362
           KACI +V+++ DDGA  VLSA+LEATRS EK VKTE +VPLS+D I+E VMK+E GRSMT
Sbjct: 302 KACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMT 361

Query: 363 LDRVEASLSALGCS-----GMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS 422
           L+RV  SL  LGC+       E Y ++L+ IIE AQ DEVESI LKRYGRDAYR+FR LS
Sbjct: 362 LERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLS 421

Query: 423 KTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNL 482
           K+  L+ET+KISD+ FV+K +  KILY+LWKDEYL MEK+ +   R S  LLW+V +  L
Sbjct: 422 KSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTL 481

Query: 483 WEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLL 542
           W HVL+EMYH++LNL LR AYE+EQ++E++ LP +KR G L  R+ RLR VRILLESSL+
Sbjct: 482 WGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLM 524

Query: 543 KLDDALMLFHDF 548
           KLDDA+MLF+DF
Sbjct: 542 KLDDAIMLFNDF 524

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00940.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPC3_HUMAN	4.0e-24	24.62	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens GN=POLR3C PE=1 SV=1	[more]
RPC3_BOVIN	1.5e-23	24.66	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus GN=POLR3C PE=2 SV=1	[more]
RPC3_DANRE	4.5e-20	22.57	DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio GN=polr3c PE=2 SV=1	[more]
RPC3_DICDI	4.3e-10	29.79	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum GN=polr...	[more]

BLAST of Cp4.1LG09g00940.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF3_CUCSA	3.4e-248	80.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182170 PE=4 SV=1	[more]
E0CV20_VITVI	6.1e-165	56.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g00450 PE=4 SV=...	[more]
V4RLV1_9ROSI	5.4e-161	55.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004721mg PE=4 SV=1	[more]
A0A067EAC9_CITSI	5.4e-161	55.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009725mg PE=4 SV=1	[more]
A0A067EM62_CITSI	2.9e-159	55.96	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009725mg PE=4 SV=1	[more]

BLAST of Cp4.1LG09g00940.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49000.1	8.5e-126	44.39	RNA polymerase III subunit RPC82 family protein	[more]

BLAST of Cp4.1LG09g00940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077489\|ref\|XP_008439232.1\|	3.0e-250	80.62	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo...	[more]
gi\|778679586\|ref\|XP_011651154.1\|	4.9e-248	80.62	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sati...	[more]
gi\|659077493\|ref\|XP_008439234.1\|	2.1e-198	78.71	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo...	[more]
gi\|778679588\|ref\|XP_011651155.1\|	5.1e-197	78.94	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis sati...	[more]
gi\|731424113\|ref\|XP_010662742.1\|	8.8e-165	56.88	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Vitis vinife...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR013197	RNA_pol_III_RPC82-rel_HTH
IPR008806	RNA_pol_III_Rpc82_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g00940	Cp4.1LG09g00940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00940.1	Cp4.1LG09g00940.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00940.1:five_prime_utr:001	Cp4.1LG09g00940.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00940.1:cds:014	Cp4.1LG09g00940.1:cds:014	CDS
Cp4.1LG09g00940.1:cds:013	Cp4.1LG09g00940.1:cds:013	CDS
Cp4.1LG09g00940.1:cds:012	Cp4.1LG09g00940.1:cds:012	CDS
Cp4.1LG09g00940.1:cds:011	Cp4.1LG09g00940.1:cds:011	CDS
Cp4.1LG09g00940.1:cds:010	Cp4.1LG09g00940.1:cds:010	CDS
Cp4.1LG09g00940.1:cds:009	Cp4.1LG09g00940.1:cds:009	CDS
Cp4.1LG09g00940.1:cds:008	Cp4.1LG09g00940.1:cds:008	CDS
Cp4.1LG09g00940.1:cds:007	Cp4.1LG09g00940.1:cds:007	CDS
Cp4.1LG09g00940.1:cds:006	Cp4.1LG09g00940.1:cds:006	CDS
Cp4.1LG09g00940.1:cds:005	Cp4.1LG09g00940.1:cds:005	CDS
Cp4.1LG09g00940.1:cds:004	Cp4.1LG09g00940.1:cds:004	CDS
Cp4.1LG09g00940.1:cds:003	Cp4.1LG09g00940.1:cds:003	CDS
Cp4.1LG09g00940.1:cds:002	Cp4.1LG09g00940.1:cds:002	CDS
Cp4.1LG09g00940.1:cds:001	Cp4.1LG09g00940.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00940.1:three_prime_utr:001	Cp4.1LG09g00940.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 181..363 score: 5.0
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 score: 1.3
None	No IPR available	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 2..138 score: 8.0E-132coord: 158..547 score: 8.0E