Cp4.1LG07g04850.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG07g04850.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUncharacterised conserved protein UCP031279
LocationCp4.1LG07 : 3462610 .. 3463023 (-)
Sequence length414
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCGTTACACTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAAAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGAGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACAGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGTGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

mRNA sequence

ATGCGATTCGTTACACTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAAAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGAGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACAGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGTGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

Coding sequence (CDS)

ATGCGATTCGTTACACTACCCATCAGAGCTCTTGGCAAGGCCAAGGATTTGTATGTACGAAGCATCATGGATTGTGCTCCGAGAGTTAGCCATGGCTACCCATCTGGCCAAATGCCCGTCTTGCCCAAAAGTTACAGCTCGCGATCCTGCAGATCCAATGAAACCGATGATTTCAGAGAGCTTGTTAAGGCCGCTTCTGTTAGGAGTATGGACATTAAAGATGTCGACGCCGATGTTGTTTATCCACAGAGGGTGAGACAGTCCACAGGGCTGCCTAAGAGTTGCAGCGTTGGAATGGGTAGGATTGATGAAGATAGTGCTTGCGAGTTTGAAGGTGGCGTGGAGGAGAAGGGTGATTTGGTTTATCCAAGGAGTAGAAGCTACGCTGTGACGAGTACAAAATCTGGGGCTTGA

Protein sequence

MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDLVYPRSRSYAVTSTKSGA
BLAST of Cp4.1LG07g04850.1 vs. TrEMBL
Match: A0A0A0LN74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354110 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-61
Identity = 115/136 (84.56%), Postives = 128/136 (94.12%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 60
           +RFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSRSCRSNETDDFRE
Sbjct: 13  IRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSRSCRSNETDDFRE 72

Query: 61  LVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDL 120
           LVKAASVRS+DIKD+DAD++YPQR RQS GLPKSCSVGMGRIDED+ACEFE GVE+K  L
Sbjct: 73  LVKAASVRSLDIKDIDADILYPQRQRQSKGLPKSCSVGMGRIDEDTACEFEEGVEDKAHL 132

Query: 121 VYPRSRSYAVTSTKSG 137
            YPRS+SYAVT++ SG
Sbjct: 133 AYPRSKSYAVTNSNSG 148

BLAST of Cp4.1LG07g04850.1 vs. TrEMBL
Match: A0A061FMI7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034673 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.3e-27
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSG----QMPVLPKSYSSRSCRS-NET 60
           +RF+T+P + LGKA+DLYVRS+  CA  V +G  SG    Q   LP+S+S+ S  S N  
Sbjct: 12  VRFITVPFKMLGKARDLYVRSLSSCASTVRYGQSSGGYTGQYSGLPRSFSASSAASSNGN 71

Query: 61  DDFRELVKAASVRSMDIKDVDADVVYPQRVRQ--STGLPKSCSVGMGRIDEDSACEFEGG 120
           +DFREL++AASVRS+   + + ++   Q++RQ  S GLPKSCSVGMGRIDED  CEFE  
Sbjct: 72  EDFRELIRAASVRSLGHSN-EMEMFLQQQLRQMGSKGLPKSCSVGMGRIDEDKPCEFEEE 131

Query: 121 ----VEEKGDLVYPRSRSYAV 131
               V++K D +YPRS+SYAV
Sbjct: 132 DDVVVDKKQDFLYPRSKSYAV 151

BLAST of Cp4.1LG07g04850.1 vs. TrEMBL
Match: F6H184_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08810 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.3e-26
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 60
           MR +TLPIR LGKAKDLYVR + +CA R  +G   G    +P+SYS  S RSN+ +DFRE
Sbjct: 12  MRIITLPIRVLGKAKDLYVRGMTNCATR-GYGNNMGGPAGMPRSYSYASSRSNDNEDFRE 71

Query: 61  LVKAASVRSMDIKDVDADVVYPQ-RVRQSTGLPKSCSVGMGRIDEDSACEFEGGV--EEK 120
           LV+AASV ++    VD + +  Q    +S  +P+SCSVGM RIDED  C   G V  + K
Sbjct: 72  LVRAASVNTLG-HGVDLNALLQQSAAEKSKVVPRSCSVGMARIDEDGPCNDFGEVNFKAK 131

Query: 121 GDLVYPRSRSYAVTSTKSG 137
            DL+YPRSRSYAVT    G
Sbjct: 132 ADLMYPRSRSYAVTKRSVG 148

BLAST of Cp4.1LG07g04850.1 vs. TrEMBL
Match: A0A0D2QZ62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G221200 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 71/147 (48.30%), Postives = 94/147 (63.95%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSG----QMPVLPKSYSSR-SCRSNET 60
           MRF+T+P +AL KA+DLYVRS+  CA RVS+G+ SG    Q   LP+S+SS  S   N+ 
Sbjct: 12  MRFITVPFKALVKARDLYVRSLTTCASRVSYGHGSGGCSAQYSGLPRSFSSALSATCNDN 71

Query: 61  DDFRELVKAASVRSMDIKDVDADVVYPQRVRQSTG---LPKSCSVGMGRIDEDSACEFEG 120
           +D REL++AASV S+  +  + +++  Q++R   G   LPKSCSV MGRIDE+  CEFE 
Sbjct: 72  EDLRELIRAASVTSLGHRK-EMEMLLKQQLRVQMGSKALPKSCSVVMGRIDEEKPCEFEE 131

Query: 121 GVEEKGDLV----YPRSRSYAVTSTKS 136
                  +V     PRSRSYAV  T S
Sbjct: 132 NDASAAVVVKKNNNPRSRSYAVRKTTS 157

BLAST of Cp4.1LG07g04850.1 vs. TrEMBL
Match: E0CP00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08820 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-22
Identity = 66/141 (46.81%), Postives = 83/141 (58.87%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSH----GYPSGQMPVLPKSYSSRSCRSNETD 60
           MR +T+PIR L KA+D YVRS+ D A RVS     G P   +  LPKS+S  S RS + +
Sbjct: 12  MRIITIPIRVLSKARDFYVRSLTDAAERVSRGNAMGCPGVHISTLPKSFSVSSSRSGDGE 71

Query: 61  DFRELVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEF-EGGVE 120
           D   L ++ S  S   + VD +V        S   P+SCSVGMGRIDED  C+F E    
Sbjct: 72  DVGSLSRSGSASSSSNR-VDMNVFLQPPKMGSRAAPRSCSVGMGRIDEDRPCDFEEDSFN 131

Query: 121 EKGDLVYPRSRSYAVTSTKSG 137
            K D +YPRSRSYAVT+ + G
Sbjct: 132 VKADFLYPRSRSYAVTNRRVG 151

BLAST of Cp4.1LG07g04850.1 vs. TAIR10
Match: AT1G10140.1 (AT1G10140.1 Uncharacterised conserved protein UCP031279)

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-21
Identity = 62/157 (39.49%), Postives = 90/157 (57.32%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNET----- 60
           +R ++ P+RALGKA+D YVRSI  CA R  +   +      P+S SS S   + +     
Sbjct: 9   LRIISTPLRALGKARDFYVRSITGCAARTQYSSSASVSAPFPRSRSSSSAAFSSSASSRR 68

Query: 61  -------DDFRELVKAASVRSMDIKDVDADVVYPQRVRQST-----GLPKSCSVGMGRID 120
                  +D+ ELV+AASVRS+  K+ + D++  ++++Q       GLPKS S GM RI+
Sbjct: 69  TTDFGIDEDYSELVRAASVRSLGHKN-EIDMLIQEKLQQQKQQKQGGLPKSSSAGMARIE 128

Query: 121 EDSACEFEGGVEEK-------GDLVYPRSRSYAVTST 134
           E+   E EG V  K        DL+YPRS+SYAVT++
Sbjct: 129 EEEETE-EGSVNPKVKKTKKVSDLLYPRSKSYAVTTS 163

BLAST of Cp4.1LG07g04850.1 vs. TAIR10
Match: AT1G58420.1 (AT1G58420.1 Uncharacterised conserved protein UCP031279)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-16
Identity = 66/166 (39.76%), Postives = 92/166 (55.42%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRV--SHGYPSGQMPVLPKSYSSRSCRSNET--- 60
           +R VT+P++ L KA+DLY+RSI  CA R   S    +  +P  P+S S+ S  S+     
Sbjct: 12  LRIVTMPLKVLCKARDLYMRSITGCAARTHYSSAVDAASVP-FPRSRSTSSAFSSSASSR 71

Query: 61  ---------DDFRELVKAASVRSMDIKDVDADVVYPQRVRQST----------------G 120
                    DD+ EL++AASVRS+  K+ + D++  Q+ +Q                  G
Sbjct: 72  RRSSDFTFDDDYSELLRAASVRSLGHKN-EIDMIIQQQQQQQQQRQENRVAMGAVTVKGG 131

Query: 121 LPKSCSVG--MGRIDEDSACEFEGGV--EEKG-DLVYPRSRSYAVT 132
           LPKS SVG  M RIDE+   E EG V  ++KG D +YPRSRS+AVT
Sbjct: 132 LPKSSSVGMTMARIDEED--EEEGSVKNQKKGSDFLYPRSRSHAVT 173

BLAST of Cp4.1LG07g04850.1 vs. NCBI nr
Match: gi|659087588|ref|XP_008444532.1| (PREDICTED: uncharacterized protein LOC103487823 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-63
Identity = 118/136 (86.76%), Postives = 131/136 (96.32%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 60
           MRFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSRSCRSNETDDFRE
Sbjct: 13  MRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSRSCRSNETDDFRE 72

Query: 61  LVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDL 120
           LVKAASVRS+DIKD+DAD++YPQR+RQS GLPKSCSVGMGRIDED+ACEFE  VE+K DL
Sbjct: 73  LVKAASVRSLDIKDIDADILYPQRLRQSKGLPKSCSVGMGRIDEDTACEFEESVEDKADL 132

Query: 121 VYPRSRSYAVTSTKSG 137
           VYPRS+SYAVT++KSG
Sbjct: 133 VYPRSKSYAVTNSKSG 148

BLAST of Cp4.1LG07g04850.1 vs. NCBI nr
Match: gi|778670932|ref|XP_011649558.1| (PREDICTED: uncharacterized protein LOC105434639 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.0e-61
Identity = 115/136 (84.56%), Postives = 128/136 (94.12%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 60
           +RFVTLPIRALGKAKD YV+SIMDCAPRVSHGYPSGQ+P+LPKSYSSRSCRSNETDDFRE
Sbjct: 13  IRFVTLPIRALGKAKDFYVKSIMDCAPRVSHGYPSGQLPILPKSYSSRSCRSNETDDFRE 72

Query: 61  LVKAASVRSMDIKDVDADVVYPQRVRQSTGLPKSCSVGMGRIDEDSACEFEGGVEEKGDL 120
           LVKAASVRS+DIKD+DAD++YPQR RQS GLPKSCSVGMGRIDED+ACEFE GVE+K  L
Sbjct: 73  LVKAASVRSLDIKDIDADILYPQRQRQSKGLPKSCSVGMGRIDEDTACEFEEGVEDKAHL 132

Query: 121 VYPRSRSYAVTSTKSG 137
            YPRS+SYAVT++ SG
Sbjct: 133 AYPRSKSYAVTNSNSG 148

BLAST of Cp4.1LG07g04850.1 vs. NCBI nr
Match: gi|590596880|ref|XP_007018459.1| (Uncharacterized protein TCM_034673 [Theobroma cacao])

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-27
Identity = 74/141 (52.48%), Postives = 98/141 (69.50%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSG----QMPVLPKSYSSRSCRS-NET 60
           +RF+T+P + LGKA+DLYVRS+  CA  V +G  SG    Q   LP+S+S+ S  S N  
Sbjct: 12  VRFITVPFKMLGKARDLYVRSLSSCASTVRYGQSSGGYTGQYSGLPRSFSASSAASSNGN 71

Query: 61  DDFRELVKAASVRSMDIKDVDADVVYPQRVRQ--STGLPKSCSVGMGRIDEDSACEFEGG 120
           +DFREL++AASVRS+   + + ++   Q++RQ  S GLPKSCSVGMGRIDED  CEFE  
Sbjct: 72  EDFRELIRAASVRSLGHSN-EMEMFLQQQLRQMGSKGLPKSCSVGMGRIDEDKPCEFEEE 131

Query: 121 ----VEEKGDLVYPRSRSYAV 131
               V++K D +YPRS+SYAV
Sbjct: 132 DDVVVDKKQDFLYPRSKSYAV 151

BLAST of Cp4.1LG07g04850.1 vs. NCBI nr
Match: gi|359491947|ref|XP_003634344.1| (PREDICTED: uncharacterized protein LOC100267722 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-26
Identity = 73/139 (52.52%), Postives = 91/139 (65.47%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHGYPSGQMPVLPKSYSSRSCRSNETDDFRE 60
           MR +TLPIR LGKAKDLYVR + +CA R  +G   G    +P+SYS  S RSN+ +DFRE
Sbjct: 12  MRIITLPIRVLGKAKDLYVRGMTNCATR-GYGNNMGGPAGMPRSYSYASSRSNDNEDFRE 71

Query: 61  LVKAASVRSMDIKDVDADVVYPQ-RVRQSTGLPKSCSVGMGRIDEDSACEFEGGV--EEK 120
           LV+AASV ++    VD + +  Q    +S  +P+SCSVGM RIDED  C   G V  + K
Sbjct: 72  LVRAASVNTLG-HGVDLNALLQQSAAEKSKVVPRSCSVGMARIDEDGPCNDFGEVNFKAK 131

Query: 121 GDLVYPRSRSYAVTSTKSG 137
            DL+YPRSRSYAVT    G
Sbjct: 132 ADLMYPRSRSYAVTKRSVG 148

BLAST of Cp4.1LG07g04850.1 vs. NCBI nr
Match: gi|1009135230|ref|XP_015884875.1| (PREDICTED: uncharacterized protein LOC107420429 [Ziziphus jujuba])

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-25
Identity = 77/147 (52.38%), Postives = 96/147 (65.31%), Query Frame = 1

Query: 1   MRFVTLPIRALGKAKDLYVRSIMDCAPRVSHG---YPSGQMPVLPKSYSSRSCRSNETDD 60
           MR +T+PIR L KAKD+YVR  M+ A R+ +G    P GQ   LPKS+S RS R NE DD
Sbjct: 13  MRIITIPIRVLSKAKDMYVRG-MNSAERMGYGSMGVPDGQFTSLPKSFSCRSSRLNENDD 72

Query: 61  FRELVKAASVRSMDIKDVDADVVYPQRV-RQSTG------LPKSCSVGMGRIDEDSACEF 120
           F EL++AAS RS   + +D D +  Q+V RQ+T       LPK  SVGMG+IDEDS C+F
Sbjct: 73  FSELIRAASARSYGSR-IDVDAILRQQVMRQTTTKTGSKVLPKCSSVGMGKIDEDSPCDF 132

Query: 121 -EGGVEEKGDLVYPRSRSYAVTSTKSG 137
            + G   K DL +PRSRSYAVT  + G
Sbjct: 133 GDDGGNLKADL-FPRSRSYAVTKRRVG 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LN74_CUCSA2.1e-6184.56Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354110 PE=4 SV=1[more]
A0A061FMI7_THECC3.3e-2752.48Uncharacterized protein OS=Theobroma cacao GN=TCM_034673 PE=4 SV=1[more]
F6H184_VITVI6.3e-2652.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08810 PE=4 SV=... [more]
A0A0D2QZ62_GOSRA1.1e-2248.30Uncharacterized protein OS=Gossypium raimondii GN=B456_009G221200 PE=4 SV=1[more]
E0CP00_VITVI1.4e-2246.81Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08820 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G10140.17.1e-2139.49 Uncharacterised conserved protein UCP031279[more]
AT1G58420.11.4e-1639.76 Uncharacterised conserved protein UCP031279[more]
Match NameE-valueIdentityDescription
gi|659087588|ref|XP_008444532.1|3.2e-6386.76PREDICTED: uncharacterized protein LOC103487823 [Cucumis melo][more]
gi|778670932|ref|XP_011649558.1|3.0e-6184.56PREDICTED: uncharacterized protein LOC105434639 [Cucumis sativus][more]
gi|590596880|ref|XP_007018459.1|4.8e-2752.48Uncharacterized protein TCM_034673 [Theobroma cacao][more]
gi|359491947|ref|XP_003634344.1|9.0e-2652.52PREDICTED: uncharacterized protein LOC100267722 [Vitis vinifera][more]
gi|1009135230|ref|XP_015884875.1|2.0e-2552.38PREDICTED: uncharacterized protein LOC107420429 [Ziziphus jujuba][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016972UCP031279
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG07g04850Cp4.1LG07g04850gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG07g04850.1:cds:001Cp4.1LG07g04850.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG07g04850.1Cp4.1LG07g04850.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016972Uncharacterised conserved protein UCP031279PIRPIRSF031279UCP031279coord: 1..136
score: 3.8
NoneNo IPR availablePANTHERPTHR33526FAMILY NOT NAMEDcoord: 1..133
score: 6.5
NoneNo IPR availablePANTHERPTHR33526:SF2SUBFAMILY NOT NAMEDcoord: 1..133
score: 6.5