Cp4.1LG07g03270.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g03270.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CCR4-NOT transcription complex subunit 7
Location	Cp4.1LG07 : 2047387 .. 2048211 (-)
Sequence length	825

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATATTGCCGAAAGGTGAGTCGATTCATATCCGTGAGGTGTGGAACCATAACGTGGAGGAAGAGTTCGCTCTAATGCGTGAAATTGTCGACAAATTTAATTACATAGCGATGGATACTGAGTTCCCCGGCGTGGTGGTTCGCCCTGTGGGTGCTTTTAAGAATATCAACGATTATAACTATCAAACCCTCAAAGATAATGTCGACACGTTGAAGTTGATTCAGTTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACAGATAAGTTTTGCATTTGGCAGTTTAATTTCAGGGAGTTCAACATTAGTAACGATATTTTCGCTAGTGATTCCATTGAGCTTTTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATTGATGTCAATCACTTCGGTGAGCTTCTAATGTCATCTGGGATTGTTTTGAACGATAATGTTTACTGGGTGACCTTTCACAGTGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCGAAGCCTACCAGGGACGCAGGCTGCATTCTTTGATTTGATCAATATGTATTTCCCAATGGTTTATGACATCAAGCATTTGATGAAGTTTTGCAACAGTTTCCATGGTGGGCTGAACAAGCTTGCAGAGTTATTAGAAGTGGAAAGGATTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTGAGGGATACTTTTTTCAATGGGTCTACTCAGAAATACGCCGGTGTTTTATATGGTCTGGGCGTTGAAACTGGCCAGACTACTAATTAA

mRNA sequence

ATGTCCATATTGCCGAAAGGTGAGTCGATTCATATCCGTGAGGTGTGGAACCATAACGTGGAGGAAGAGTTCGCTCTAATGCGTGAAATTGTCGACAAATTTAATTACATAGCGATGGATACTGAGTTCCCCGGCGTGGTGGTTCGCCCTGTGGGTGCTTTTAAGAATATCAACGATTATAACTATCAAACCCTCAAAGATAATGTCGACACGTTGAAGTTGATTCAGTTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACAGATAAGTTTTGCATTTGGCAGTTTAATTTCAGGGAGTTCAACATTAGTAACGATATTTTCGCTAGTGATTCCATTGAGCTTTTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATTGATGTCAATCACTTCGGTGAGCTTCTAATGTCATCTGGGATTGTTTTGAACGATAATGTTTACTGGGTGACCTTTCACAGTGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCGAAGCCTACCAGGGACGCAGGCTGCATTCTTTGATTTGATCAATATGTATTTCCCAATGGTTTATGACATCAAGCATTTGATGAAGTTTTGCAACAGTTTCCATGGTGGGCTGAACAAGCTTGCAGAGTTATTAGAAGTGGAAAGGATTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTGAGGGATACTTTTTTCAATGGGTCTACTCAGAAATACGCCGGTGTTTTATATGGTCTGGGCGTTGAAACTGGCCAGACTACTAATTAA

Coding sequence (CDS)

ATGTCCATATTGCCGAAAGGTGAGTCGATTCATATCCGTGAGGTGTGGAACCATAACGTGGAGGAAGAGTTCGCTCTAATGCGTGAAATTGTCGACAAATTTAATTACATAGCGATGGATACTGAGTTCCCCGGCGTGGTGGTTCGCCCTGTGGGTGCTTTTAAGAATATCAACGATTATAACTATCAAACCCTCAAAGATAATGTCGACACGTTGAAGTTGATTCAGTTGGGTCTTACGTTTTCTGATGAGAATGGGAATCTCCCAACTTGTGGAACAGATAAGTTTTGCATTTGGCAGTTTAATTTCAGGGAGTTCAACATTAGTAACGATATTTTCGCTAGTGATTCCATTGAGCTTTTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATTGATGTCAATCACTTCGGTGAGCTTCTAATGTCATCTGGGATTGTTTTGAACGATAATGTTTACTGGGTGACCTTTCACAGTGGGTATGATTTTGGGTACTTGCTGAAATTGTTGACTTGCCGAAGCCTACCAGGGACGCAGGCTGCATTCTTTGATTTGATCAATATGTATTTCCCAATGGTTTATGACATCAAGCATTTGATGAAGTTTTGCAACAGTTTCCATGGTGGGCTGAACAAGCTTGCAGAGTTATTAGAAGTGGAAAGGATTGGAGTTTGCCATCAAGCAGGATCAGATAGCCTCCTTACTGCCTGTACTTTCAGGAAGTTGAGGGATACTTTTTTCAATGGGTCTACTCAGAAATACGCCGGTGTTTTATATGGTCTGGGCGTTGAAACTGGCCAGACTACTAATTAA

Protein sequence

MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDYNYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN

Homology

[Close]

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 438.0 bits (1125), Expect = 7.8e-122
Identity = 202/272 (74.26%), Postives = 237/272 (87.13%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MS+  K +SI IREVWN N+E E AL+RE+VD F ++AMDTEFPG+V RPVG FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNISNDIFASDSIE 120
           +Y+TLK NV+ LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSL 180
           LLRQ GIDF KNNE GID   F ELLMSSGIVLN+NV+WVTFHSGYDFGYLLKLLTC++L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P TQ  FF++I++YFP VYDIKHLMKFCNS HGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQ 272
           +CTFRKL++ FF GS +KY+GVLYGLGVE GQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 8.7e-121
Identity = 200/271 (73.80%), Postives = 233/271 (85.98%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MS+  K +SI IREVWN N++EE  L+R++VD F Y+AMDTEFPG+VVRPVG FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           +Y+TLK NV+ LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           L+Q GID  KN  +GID   F ELLMSSGIVLN+NV+WVTFHSGYDFGYLLKLLTC++LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            +Q  FF LIN+YFP VYDIKHLMKFCNS HGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQ 272
           CTFRKL++ FF G   KY+GVLYGLGVE GQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.3e-119
Identity = 202/268 (75.37%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 6   KGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDYNYQTL 65
           K +SI IREVW++N+ EEFAL+REIVDKF+YIAMDTEFPGVV++PV  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELLRQCG 125
           K+NVD LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPGTQAA 185
           IDF+KN E+GIDV  FGEL+MSSGIVLND + WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF L+ +YFP VYDIKHLM FCN   GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRDTFFNGSTQKYAGVLYGLGVETGQTT 274
           L++ +F GST+KY GVLYGLGVE G TT
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 4.8e-95
Identity = 164/264 (62.12%), Postives = 204/264 (77.27%), Query Frame = 1


Query: 8   ESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIN------DYN 67
           ++I IREVWNHN+E+E AL+ + +D F Y+AMDTEFPG+V + V A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELL 127
           Y TLK NV+ LKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPG 187
           R+  ID +KNNE G+D   F ELLM SG+VLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 TQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 247
             + FFD +  +FP+VYDIK+LM FC + +GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRDTFFNGSTQKYAGVLYGL 266
           TF K+++ FF GS  KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.8e-79
Identity = 145/265 (54.72%), Postives = 192/265 (72.45%), Query Frame = 1


Query: 12  IREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDYNYQTLKDNVDT 71
           I EVW  N+EEE   +REIV  ++YIAMDTEFPGVVVRP+G F++  DY YQ L+ NVD 
Sbjct: 12  ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71

Query: 72  LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELLRQCGIDFQKN 131
           LK+IQLGLTF++E G  P+ G +    WQFNF+ FN++ D+++ DSI+LL   G+ FQK+
Sbjct: 72  LKIIQLGLTFTNEKGEYPS-GINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 131

Query: 132 NEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPGTQAAFFDLIN 191
            EEGID  HF ELLM+SG+VL DNV W++FHSGYDFGY++KLLT   LP  +  FF ++N
Sbjct: 132 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 191

Query: 192 MYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRKLRDTFF 251
           ++FP +YD+K+LMK C +  GGL ++A+ L+++RIG  HQAGSDSLLT   F ++++ FF
Sbjct: 192 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 251

Query: 252 NGSTQ--KYAGVLYGLGVETGQTTN 275
             S    KY G LYGLG    Q  N
Sbjct: 252 EDSIDDAKYCGRLYGLGTGVAQKQN 271

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL
Match: A0A0A0LSM4_CUCSA (Ccr4-associated factor OS=Cucumis sativus GN=Csa_2G382590 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 3.4e-148
Identity = 249/274 (90.88%), Postives = 268/274 (97.81%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MSILPKGESI+IREVWN N+EEEFAL+R+IVD+FNYIAMDTEFPGVVVRPVG+FKNIN+Y
Sbjct: 1   MSILPKGESINIREVWNDNLEEEFALIRDIVDQFNYIAMDTEFPGVVVRPVGSFKNINEY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NY+TL++NVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI +DI+ASDSIEL
Sbjct: 61  NYRTLRENVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNICDDIYASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LR+CGIDFQK +EEGIDVN FGELLMSSGIVLNDN++WVTFHSGYDFGYLLKLLTCR+LP
Sbjct: 121 LRECGIDFQKTHEEGIDVNRFGELLMSSGIVLNDNIFWVTFHSGYDFGYLLKLLTCRNLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            TQA FFDLI+MYFPMVYDIKHLM+FCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 ETQAEFFDLIHMYFPMVYDIKHLMRFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN
Sbjct: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 274

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL
Match: B9RNX3_RICCO (Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 7.1e-146
Identity = 244/273 (89.38%), Postives = 259/273 (94.87%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MSI+PKG+SIHIREVWN N+EEEF L+REIVD+FNY+AMDTEFPGVV+RPVG FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LRQCGIDF+KNNE+GIDVN FGEL+MSSGIVLND V+WVTFHSGYDFGYLLKLLTCRSLP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            TQA FFDLIN YFPMVYDIKHLMKFCNS HGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTT 274
           CTFRKLRD FFNGST+KYAGVLYGLGVE GQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL
Match: W9QRX8_9ROSA (Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_014468 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 2.7e-145
Identity = 248/276 (89.86%), Postives = 262/276 (94.93%), Query Frame = 1


Query: 1   MSILPK--GESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIN 60
           MSIL K  G+SI IREVWN N+EEEFAL+REIVDK+NY+AMDTEFPGVV+RPVG FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSI 120
           DYNYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRS 180
           ELLRQCGIDF+KNNE+GIDVN FGELLMSSGIVLND V+WVTFHSGYDFGYLLKLLTC+S
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP TQA FFDLIN+YFPMVYDIKHLMKFCNS HGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           T+CTFRKLRDTFFNGST+KYAGVLYGLGVE GQTTN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL
Match: A0A067KMK9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.3e-144
Identity = 245/275 (89.09%), Postives = 260/275 (94.55%), Query Frame = 1


Query: 1   MSILPKGE-SIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIND 60
           MSI+PK + SI IREVWN N+EEEFAL+REIVD+FNY+AMDTEFPGVV+RPVG FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIE 120
           YNYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSL 180
           LLRQCGIDF+KNNE+GIDVN FGELLMSSG+VLND+VYWVTFHSGYDFGYLLKLLTCRSL
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P TQA FFDLINMYFP+VYDIKHLMKFCNS HGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           +CTFRKLRD FFNGS +KYAGVLYGLGVE GQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL
Match: A0A0D2RV14_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G061200 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 1.1e-143
Identity = 240/274 (87.59%), Postives = 259/274 (94.53%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MS+LPKG+S+HIREVWN N+EEEFAL+REIVD +NY+AMDTEFPGVV+RPVG+FKNI+DY
Sbjct: 1   MSVLPKGDSVHIREVWNDNLEEEFALIREIVDTYNYVAMDTEFPGVVLRPVGSFKNISDY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTD  CIWQFNF EFNIS DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSSCIWQFNFCEFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LRQCGIDF+KNNE+GIDV  FGELLMSSGIVLND V+WVTFHSGYDFGYLLKLLTCRSLP
Sbjct: 121 LRQCGIDFKKNNEKGIDVKRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             QA FFDLINMYFPM+YDIKH+MKFCNS HGGLNKLAELLEVER+GVCHQAGSDSLLT+
Sbjct: 181 DNQAGFFDLINMYFPMLYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           CTFRKLRD FFNGST+KYAGVLYGLGVE+GQTTN
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVESGQTTN 274

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 438.0 bits (1125), Expect = 4.4e-123
Identity = 202/272 (74.26%), Postives = 237/272 (87.13%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MS+  K +SI IREVWN N+E E AL+RE+VD F ++AMDTEFPG+V RPVG FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNISNDIFASDSIE 120
           +Y+TLK NV+ LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF++ +DI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSL 180
           LLRQ GIDF KNNE GID   F ELLMSSGIVLN+NV+WVTFHSGYDFGYLLKLLTC++L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P TQ  FF++I++YFP VYDIKHLMKFCNS HGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQ 272
           +CTFRKL++ FF GS +KY+GVLYGLGVE GQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 430.6 bits (1106), Expect = 7.0e-121
Identity = 202/268 (75.37%), Postives = 232/268 (86.57%), Query Frame = 1


Query: 6   KGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDYNYQTL 65
           K +SI IREVW++N+ EEFAL+REIVDKF+YIAMDTEFPGVV++PV  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELLRQCG 125
           K+NVD LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPGTQAA 185
           IDF+KN E+GIDV  FGEL+MSSGIVLND + WVTFH GYDFGYL+KLLTC+ LP  QA 
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTACTFRK 245
           FF L+ +YFP VYDIKHLM FCN   GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRDTFFNGSTQKYAGVLYGLGVETGQTT 274
           L++ +F GST+KY GVLYGLGVE G TT
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 430.3 bits (1105), Expect = 9.2e-121
Identity = 198/268 (73.88%), Postives = 231/268 (86.19%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MS+  K +SI IREVWN N++EE  L+R++VD F Y+AMDTEFPG+VVRPVG FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           +Y+TLK NV+ LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF++ +DIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           L+Q GID  KN  +GID   F ELLMSSGIVLN+NV+WVTFHSGYDFGYLLKLLTC++LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            +Q  FF LIN+YFP VYDIKHLMKFCNS HGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVE 269
           CTFRKL++ FF G   KY+GVLYGLGVE
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVE 268

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10
Match: AT1G15920.2 (AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 349.0 bits (894), Expect = 2.7e-96
Identity = 164/264 (62.12%), Postives = 204/264 (77.27%), Query Frame = 1


Query: 8   ESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIN------DYN 67
           ++I IREVWNHN+E+E AL+ + +D F Y+AMDTEFPG+V + V A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIELL 127
           Y TLK NV+ LKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+ +D+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPG 187
           R+  ID +KNNE G+D   F ELLM SG+VLND ++WVTFH GYDFGYLLKLL+ + LP 
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 TQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTAC 247
             + FFD +  +FP+VYDIK+LM FC + +GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRDTFFNGSTQKYAGVLYGL 266
           TF K+++ FF GS  KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-75
Identity = 143/269 (53.16%), Postives = 187/269 (69.52%), Query Frame = 1


Query: 5   PKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDYNYQT 64
           P G ++  REVW  N+E EF L+ EI+D + +I+MDTEFPGV+ +    F N +D  Y  
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 71

Query: 65  LKDNVDTLKLIQLGLTFSDENGNLPTCGTD--KFCIWQFNFREFNISNDIFASDSIELLR 124
           LK NVD L LIQ+GLT SD NGNLP  G D  +  IW+FNFR+F+++ D  A DSIELLR
Sbjct: 72  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 131

Query: 125 QCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLPGT 184
           + GIDF++N  +G++   F EL+MSSG+V N+ V WVTFHS YDFGYL+K+LT R LPG 
Sbjct: 132 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 191

Query: 185 QAAFFDLINMYF-PMVYDIKHLMKFC-NSFHGGLNKLAELLEVER-IGVCHQAGSDSLLT 244
              F  ++ + F   VYD+KH+MKFC     GGL+++A  LEV R +G CHQAGSDSLLT
Sbjct: 192 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 251

Query: 245 ACTFRKLRDTFF-NGSTQKYAGVLYGLGV 268
              F+++RD +F     +K+AGVLYGL V
Sbjct: 252 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279

[Close]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr
Match: gi|449441872|ref|XP_004138706.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus])

HSP 1 Score: 532.3 bits (1370), Expect = 4.9e-148
Identity = 249/274 (90.88%), Postives = 268/274 (97.81%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MSILPKGESI+IREVWN N+EEEFAL+R+IVD+FNYIAMDTEFPGVVVRPVG+FKNIN+Y
Sbjct: 1   MSILPKGESINIREVWNDNLEEEFALIRDIVDQFNYIAMDTEFPGVVVRPVGSFKNINEY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NY+TL++NVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI +DI+ASDSIEL
Sbjct: 61  NYRTLRENVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNICDDIYASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LR+CGIDFQK +EEGIDVN FGELLMSSGIVLNDN++WVTFHSGYDFGYLLKLLTCR+LP
Sbjct: 121 LRECGIDFQKTHEEGIDVNRFGELLMSSGIVLNDNIFWVTFHSGYDFGYLLKLLTCRNLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            TQA FFDLI+MYFPMVYDIKHLM+FCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 ETQAEFFDLIHMYFPMVYDIKHLMRFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN
Sbjct: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 274

[Close]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr
Match: gi|659088970|ref|XP_008445257.1| (PREDICTED: LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 528.5 bits (1360), Expect = 7.0e-147
Identity = 248/274 (90.51%), Postives = 266/274 (97.08%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MSILPKGESI+IREVWN N+EEEFAL+R+IVD+FNYIAMDTEFPGVVVRPVG+FKNIN+Y
Sbjct: 1   MSILPKGESINIREVWNDNLEEEFALIRDIVDQFNYIAMDTEFPGVVVRPVGSFKNINEY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NY+TL++NVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNI +DI+ASDSIEL
Sbjct: 61  NYRTLRENVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNICDDIYASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LR+CGIDFQK +EEGIDVN FGELLMSSGIVLNDN+ WVTFHSGYDFGYLLKLLTCR+LP
Sbjct: 121 LRECGIDFQKTHEEGIDVNRFGELLMSSGIVLNDNIXWVTFHSGYDFGYLLKLLTCRNLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            TQA FFDLI+MYFPMVYDIKHLM+FCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 ETQAEFFDLIHMYFPMVYDIKHLMRFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           CTFRKLRDTFFNGS QKYAGVLYGLGVETGQTTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVETGQTTN 274

[Close]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr
Match: gi|1000974262|ref|XP_015572459.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis])

HSP 1 Score: 524.6 bits (1350), Expect = 1.0e-145
Identity = 244/273 (89.38%), Postives = 259/273 (94.87%), Query Frame = 1


Query: 1   MSILPKGESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNINDY 60
           MSI+PKG+SIHIREVWN N+EEEF L+REIVD+FNY+AMDTEFPGVV+RPVG FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIEL 120
           NYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSLP 180
           LRQCGIDF+KNNE+GIDVN FGEL+MSSGIVLND V+WVTFHSGYDFGYLLKLLTCRSLP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 GTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
            TQA FFDLIN YFPMVYDIKHLMKFCNS HGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 CTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTT 274
           CTFRKLRD FFNGST+KYAGVLYGLGVE GQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

[Close]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr
Match: gi|703074973|ref|XP_010089956.1| (putative CCR4-associated factor 1-7-like protein [Morus notabilis])

HSP 1 Score: 522.7 bits (1345), Expect = 3.9e-145
Identity = 248/276 (89.86%), Postives = 262/276 (94.93%), Query Frame = 1


Query: 1   MSILPK--GESIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIN 60
           MSIL K  G+SI IREVWN N+EEEFAL+REIVDK+NY+AMDTEFPGVV+RPVG FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSI 120
           DYNYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRS 180
           ELLRQCGIDF+KNNE+GIDVN FGELLMSSGIVLND V+WVTFHSGYDFGYLLKLLTC+S
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP TQA FFDLIN+YFPMVYDIKHLMKFCNS HGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           T+CTFRKLRDTFFNGST+KYAGVLYGLGVE GQTTN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

[Close]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr
Match: gi|802626869|ref|XP_012076450.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas])

HSP 1 Score: 520.4 bits (1339), Expect = 1.9e-144
Identity = 245/275 (89.09%), Postives = 260/275 (94.55%), Query Frame = 1


Query: 1   MSILPKGE-SIHIREVWNHNVEEEFALMREIVDKFNYIAMDTEFPGVVVRPVGAFKNIND 60
           MSI+PK + SI IREVWN N+EEEFAL+REIVD+FNY+AMDTEFPGVV+RPVG FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYQTLKDNVDTLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISNDIFASDSIE 120
           YNYQTLKDNVD LKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIS DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNHFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCRSL 180
           LLRQCGIDF+KNNE+GIDVN FGELLMSSG+VLND+VYWVTFHSGYDFGYLLKLLTCRSL
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PGTQAAFFDLINMYFPMVYDIKHLMKFCNSFHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P TQA FFDLINMYFP+VYDIKHLMKFCNS HGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ACTFRKLRDTFFNGSTQKYAGVLYGLGVETGQTTN 275
           +CTFRKLRD FFNGS +KYAGVLYGLGVE GQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g03270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CAF1G_ARATH	7.8e-122	74.26	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE...	[more]
CAF1F_ARATH	8.7e-121	73.80	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE...	[more]
CAF1J_ARATH	1.3e-119	75.37	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ...	[more]
CAF1B_ARATH	4.8e-95	62.12	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE...	[more]
CNOT8_MOUSE	2.8e-79	54.72	CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g03270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSM4_CUCSA	3.4e-148	90.88	Ccr4-associated factor OS=Cucumis sativus GN=Csa_2G382590 PE=4 SV=1	[more]
B9RNX3_RICCO	7.1e-146	89.38	Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1	[more]
W9QRX8_9ROSA	2.7e-145	89.86	Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_0144...	[more]
A0A067KMK9_JATCU	1.3e-144	89.09	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1	[more]
A0A0D2RV14_GOSRA	1.1e-143	87.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G061200 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g03270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G32070.1	4.4e-123	74.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	7.0e-121	75.37	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	9.2e-121	73.88	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G15920.2	2.7e-96	62.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44260.1	1.5e-75	53.16	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Cp4.1LG07g03270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441872\|ref\|XP_004138706.1\|	4.9e-148	90.88	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus]	[more]
gi\|659088970\|ref\|XP_008445257.1\|	7.0e-147	90.51	PREDICTED: LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7 [Cuc...	[more]
gi\|1000974262\|ref\|XP_015572459.1\|	1.0e-145	89.38	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis]	[more]
gi\|703074973\|ref\|XP_010089956.1\|	3.9e-145	89.86	putative CCR4-associated factor 1-7-like protein [Morus notabilis]	[more]
gi\|802626869\|ref\|XP_012076450.1\|	1.9e-144	89.09	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR006941	RNase_CAF1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG07g03270	Cp4.1LG07g03270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g03270.1:cds:001	Cp4.1LG07g03270.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG07g03270.1	Cp4.1LG07g03270.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 159..243 score: 1.5E-6coord: 15..136 score: 4.6
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 5..267 score: 3.3E
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 12..265 score: 1.46
None	No IPR available	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 1..274 score: 7.5E