Cp4.1LG07g01050.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g01050.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG07 : 525149 .. 525529 (-)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACCCATGTTTTCTTTCTTTTCGTTTCAGGTTTAGAATACAAAGACGTAGCTCAAGCTCGAGATAGTTTTGCTTCACGTGAAAAGGTACGTGAATATCTACCCTAATTGGACTCGAGGATTCATATATATCAATAATCTCGCTCACTTTTTCCTTAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

mRNA sequence

ATGAATACCCATGTTTTCTTTCTTTTCGTTTCAGGTTTAGAATACAAAGACGTAGCTCAAGCTCGAGATAGTTTTGCTTCACGTGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Coding sequence (CDS)

ATGAATACCCATGTTTTCTTTCTTTTCGTTTCAGGTTTAGAATACAAAGACGTAGCTCAAGCTCGAGATAGTTTTGCTTCACGTGAAAAGGAACTTTTGAGCAACAACATTGGAGGAAGAAGAAGATTGGAAGTGAAAGAAGGTATGCCATTGGAAAGTAGCAAGAGCTCAAAAATGGCTGTTCCAAGCTCTTTCAATGGTGAAAATGGCAAGAAGAAGAAGAAGAAGAAATTGGGGAATGGTTCTTCATTAGTTTATGAAAATGCTGATTATTTGACTCATATGCATCACCCACCAAAACATAATTGA

Protein sequence

MNTHVFFLFVSGLEYKDVAQARDSFASREKELLSNNIGGRRRLEVKEGMPLESSKSSKMAVPSSFNGENGKKKKKKKLGNGSSLVYENADYLTHMHHPPKHN
Homology
[Close]
BLAST of Cp4.1LG07g01050.1 vs. TrEMBL
Match: A0A0A0KHA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 32  LLSNNIGGRRRLEVKEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKK---- 91
           L +NNIGGRR    KE M +E+SKS          S M   S+ N ENGKKK KKK    
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 92  -----LG-NGSSLVYENADYLTHMHHPPKHN 103
                +G +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]
BLAST of Cp4.1LG07g01050.1 vs. NCBI nr
Match: gi|700192568|gb|KGN47772.1| (hypothetical protein Csa_6G401420 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 1 

Query: 32  LLSNNIGGRRRLEVKEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKK---- 91
           L +NNIGGRR    KE M +E+SKS          S M   S+ N ENGKKK KKK    
Sbjct: 4   LRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSS 63

Query: 92  -----LG-NGSSLVYENADYLTHMHHPPKHN 103
                +G +GS++VY NADYLT+MHHPPKHN
Sbjct: 64  LETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]
BLAST of Cp4.1LG07g01050.1 vs. NCBI nr
Match: gi|659089256|ref|XP_008445410.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 48/112 (42.86%), Postives = 58/112 (51.79%), Query Frame = 1 

Query: 14  EYKDVAQARDSFASREKELLSNNIGGRRRLEV--KEGMPLESSKS----------SKMAV 73
           + +D   A D   S + E L NN  G RRL V  KE M +E+SKS          S M  
Sbjct: 26  QQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVF 85

Query: 74  PSSFNGENGKKKKKKK-----------LGNGSSLVYENADYLTHMHHPPKHN 103
            S+ N ENGKKK  KK           +   + +VY NADYLT+MHHPPKHN
Sbjct: 86  SSAANEENGKKKNDKKKVSSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 137

[Close]
BLAST of Cp4.1LG07g01050.1 vs. NCBI nr
Match: gi|659089258|ref|XP_008445411.1| (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 48/110 (43.64%), Postives = 57/110 (51.82%), Query Frame = 1 

Query: 16  KDVAQARDSFASREKELLSNNIGGRRRLEV--KEGMPLESSKS----------SKMAVPS 75
           +D   A D   S + E L NN  G RRL V  KE M +E+SKS          S M   S
Sbjct: 27  QDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNKELMEMENSKSFGKNGSKEKTSNMVFSS 86

Query: 76  SFNGENGKKKKKKK-----------LGNGSSLVYENADYLTHMHHPPKHN 103
           + N ENGKKK  KK           +   + +VY NADYLT+MHHPPKHN
Sbjct: 87  AANEENGKKKNDKKKVSSLETKKMGISGSTVVVYNNADYLTYMHHPPKHN 136

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g01050.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g01050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHA3_CUCSA2.7e-1051.65Uncharacterized protein OS=Cucumis sativus GN=Csa_6G401420 PE=4 SV=1[more]
BLAST of Cp4.1LG07g01050.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g01050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192568|gb|KGN47772.1|3.9e-1051.65hypothetical protein Csa_6G401420 [Cucumis sativus][more]
gi|659089256|ref|XP_008445410.1|1.1e-0742.86PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
gi|659089258|ref|XP_008445411.1|1.1e-0743.64PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG07g01050Cp4.1LG07g01050gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG07g01050.1:cds:002Cp4.1LG07g01050.1:cds:002CDS
Cp4.1LG07g01050.1:cds:001Cp4.1LG07g01050.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG07g01050.1Cp4.1LG07g01050.1-proteinpolypeptide