Cp4.1LG06g09490.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g09490.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionEthylene-responsive transcription factor 114
LocationCp4.1LG06 : 9177172 .. 9179156 (+)
Sequence length749
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGAACCCAAGCTCCACTTCAAGAATATTAGCGGCCATACCCTGTTGGCGCCAAGCCCCCTTCTCCACTATTCCTATGCCGGCCACGCACGTTCTTCAAATTACATATAAATTATGAACACCCTTTTATCCAATCCCTTCAAATTAAGACTTTTGCCCTTGATTTCATGTGCTTTCTCAAGGTGGCGAACCACGGCGGCGGCGACAATGGCGGCGGAGATGACCCGGAGGTTATGTTTTCGTCCGAGGGGGAGTTAATGGCAATGGTGTCGGCTTTGACTCATGTCATTTCGGGTGGCGCTCCTCGTGCTTCTGGGGTTGGTTGTTCGTCTCGTTCGGATGCTCTTGCGACAGTGGTGGTGGCGACGACGATGGCGACTGGGTGCTCTAGGAAAAGAGAGAGGGAAGATGAAGGTGGGATTGTGAAGTTTAGAGCAATTCAGAGTTATTCCATGCCCTCTCCGGCAATTTGTGAGTTTCTAATTCTCGTCGAAACATTTTTAAATCTAACCCAATTTTTAGATTTATTAATTTTTTTTTCTTAAATAATGAACTGGGTCCGGTTAACTGGGCTCGAGACATTTTTAGATCTAACCCAATTGGTAGAATTATTAATTTTTTTCTTAAATAATGAACTGGGTCAGGTTAGATAGGATTTACACGTGGTTCGAATTATAAATTATTAAACAATGAATGGGTTTAGTTGGTCGAGTTGAGACATCTTTGAGACTCGACCAAATGGTTCAAATTTTATAATCTTTTAACAAAACCATGTTGGGTTGGGTAAAAATGTCCTTTCGACCCAACCCAGTTGTTGGAATGGTAAATTTTAACCCAATCATAAATTTTTTGAGTTAGGTTGGTTGTAATATCCGTTTTAAAATAATTTTTTAACAAAAAATAAAATTATATATTTACTTATTTTTAAAGGGTAATCCAATTTTAATATATATTTTGAAAAATTATCTTTCTTACAAAAAATAATAATAATAATAATAATAATAATAAATTAAATTAAATTAAATTAAAATAAAAAAGTTATTTTTAATTTTTTTAAAGAATAAATAATCAAATAAAATTAAAAACTTAATTTTAATATATATTTTTGTAAATACCTTCTAAATAATTAAAAATTATTTTTAAGAATATTTGAAAAATAGATAATTAAAATAAATTGAATAAATAAACAATAATAATAAATAATTATGAAATTAAAAAATAAATCTTTATAAAATTTTAAGGAAAACAAAATTAGAATTAATTTAATTTATAATATAATTTTCTAATTCATAAAAAAAATTAGAATTAATTGAATTTGTAAATCTTGTGGGCTAGTAAAAGAGGAGGGAGGTTCAAGTTCGAGGAACACCATCCACGCCGCCACAGCTACGGCGGCGACAACGACGGCGGAATTTCCCGGCAAAGAGATAACAAGAACAAGATACAGAGGAGTAAGACAGAGGCCATGGGGAAAATGGGCTGCCGAAATTCGTGACCCTCAGAAGGCCGCTCGAGTCTGGCTCGGCACTTTCGACACTGCCGAGGCTGCCGCCCGAGCCTACGACAGCGCCGCCTTACGCTTCCGTGGCAGCAAAGCTAAGCTCAATTTCCCTGAATTTGTCACTACCCTTCCACTGTCTTCGCCGCCGACCCCAAATTTAGCCCCGTCTCCGGTGGTGCGGCCGCCGGTTTTCCCATTTGATTCAGACTATTTGCAGTATTCTCATTTGATTCAGAATTCCGGCGAAAATTCCGGCCAGCCGGCGGCGACGTTCGACAGGGTGCTCTGTAATTCGCCATTTGTGAATCCAAATTCTTTGATTTCTTCTTCGGGTACTTCTTCTGGTGCTTTGAATTTTGATTTGCCGTTTGCTCAGCAGCAGATTGCATATTTCCGGCCGCCGGAAAATCAGAGCCACGGCGGCGGGGATTCTTCAATGCCGCCGCCAACGGAATTCGGCTATCGTCCTCCCGCTACCGGTTGA

mRNA sequence

TGTGAACCCAAGCTCCACTTCAAGAATATTAGCGGCCATACCCTGTTGGCGCCAAGCCCCCTTCTCCACTATTCCTATGCCGGCCACGCACGTTCTTCAAATTACATATAAATTATGAACACCCTTTTATCCAATCCCTTCAAATTAAGACTTTTGCCCTTGATTTCATGTGCTTTCTCAAGGTGGCGAACCACGGCGGCGGCGACAATGGCGGCGGAGATGACCCGGAGGTTATGTTTTCGTCCGAGGGGGAGTTAATGGCAATGGTGTCGGCTTTGACTCATGTCATTTCGGGTGGCGCTCCTCGTGCTTCTGGGGTTGGTTGTTCGTCTCGTTCGGATGCTCTTGCGACAGTGGTGGTGGCGACGACGATGGCGACTGGGTGCTCTAGGAAAAGAGAGAGGGAAGATGAAGGTGGGATTGTGAAGTTTAGAGCAATTCAGAGTTATTCCATGCCCTCTCCGGCAATTTACTATTTGCAGTATTCTCATTTGATTCAGAATTCCGGCGAAAATTCCGGCCAGCCGGCGGCGACGTTCGACAGGGTGCTCTGTAATTCGCCATTTGTGAATCCAAATTCTTTGATTTCTTCTTCGGGTACTTCTTCTGGTGCTTTGAATTTTGATTTGCCGTTTGCTCAGCAGCAGATTGCATATTTCCGGCCGCCGGAAAATCAGAGCCACGGCGGCGGGGATTCTTCAATGCCGCCGCCAACGGAATTCGGCTATCGTCCTCCCGCTACCGGTTGA

Coding sequence (CDS)

ATGTGCTTTCTCAAGGTGGCGAACCACGGCGGCGGCGACAATGGCGGCGGAGATGACCCGGAGGTTATGTTTTCGTCCGAGGGGGAGTTAATGGCAATGGTGTCGGCTTTGACTCATGTCATTTCGGGTGGCGCTCCTCGTGCTTCTGGGGTTGGTTGTTCGTCTCGTTCGGATGCTCTTGCGACAGTGGTGGTGGCGACGACGATGGCGACTGGGTGCTCTAGGAAAAGAGAGAGGGAAGATGAAGGTGGGATTGTGAAGTTTAGAGCAATTCAGAGTTATTCCATGCCCTCTCCGGCAATTTACTATTTGCAGTATTCTCATTTGATTCAGAATTCCGGCGAAAATTCCGGCCAGCCGGCGGCGACGTTCGACAGGGTGCTCTGTAATTCGCCATTTGTGAATCCAAATTCTTTGATTTCTTCTTCGGGTACTTCTTCTGGTGCTTTGAATTTTGATTTGCCGTTTGCTCAGCAGCAGATTGCATATTTCCGGCCGCCGGAAAATCAGAGCCACGGCGGCGGGGATTCTTCAATGCCGCCGCCAACGGAATTCGGCTATCGTCCTCCCGCTACCGGTTGA

Protein sequence

MCFLKVANHGGGDNGGGDDPEVMFSSEGELMAMVSALTHVISGGAPRASGVGCSSRSDALATVVVATTMATGCSRKREREDEGGIVKFRAIQSYSMPSPAIYYLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIAYFRPPENQSHGGGDSSMPPPTEFGYRPPATG
Homology
[Close]
BLAST of Cp4.1LG06g09490.1 vs. TrEMBL
Match: A0A0A0KBY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017030 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 103 YLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIA 162
           YLQYS L+ NS E S QP   F+RVLCNSP VNP+SL+SSSG S    NF  P ++QQ+ 
Sbjct: 224 YLQYSRLLPNSRETSSQPVPAFERVLCNSPLVNPSSLVSSSGVS----NFPFPSSEQQVR 283

Query: 163 YFRPPENQSHGGGDSSMPPPTEFGYRPPATG 194
           ++ PPENQS G G SSMP PT F YRPPA G
Sbjct: 284 HYLPPENQSQGNGGSSMPFPTGFSYRPPANG 310

[Close]
BLAST of Cp4.1LG06g09490.1 vs. TrEMBL
Match: A0A0C7KKK2_CUCSA (Ethylene-responsive transcription factor 114 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 103 YLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIA 162
           YLQYS L+ NS E S QP   F+RVLCNSP VNP+SL+SSSG S    NF  P ++QQ+ 
Sbjct: 278 YLQYSRLLPNSRETSSQPVPAFERVLCNSPLVNPSSLVSSSGVS----NFPFPSSEQQVR 337

Query: 163 YFRPPENQSHGGGDSSMPPPTEFGYRPPATG 194
           ++ PPENQS G G SSMP PT F YRPPA G
Sbjct: 338 HYLPPENQSQGNGGSSMPFPTGFSYRPPANG 364

[Close]
BLAST of Cp4.1LG06g09490.1 vs. NCBI nr
Match: gi|778709855|ref|XP_004138542.2| (PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 103 YLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIA 162
           YLQYS L+ NS E S QP   F+RVLCNSP VNP+SL+SSSG S    NF  P ++QQ+ 
Sbjct: 278 YLQYSRLLPNSRETSSQPVPAFERVLCNSPLVNPSSLVSSSGVS----NFPFPSSEQQVR 337

Query: 163 YFRPPENQSHGGGDSSMPPPTEFGYRPPATG 194
           ++ PPENQS G G SSMP PT F YRPPA G
Sbjct: 338 HYLPPENQSQGNGGSSMPFPTGFSYRPPANG 364

[Close]
BLAST of Cp4.1LG06g09490.1 vs. NCBI nr
Match: gi|700190683|gb|KGN45887.1| (hypothetical protein Csa_6G017030 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 1 

Query: 103 YLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIA 162
           YLQYS L+ NS E S QP   F+RVLCNSP VNP+SL+SSSG S    NF  P ++QQ+ 
Sbjct: 224 YLQYSRLLPNSRETSSQPVPAFERVLCNSPLVNPSSLVSSSGVS----NFPFPSSEQQVR 283

Query: 163 YFRPPENQSHGGGDSSMPPPTEFGYRPPATG 194
           ++ PPENQS G G SSMP PT F YRPPA G
Sbjct: 284 HYLPPENQSQGNGGSSMPFPTGFSYRPPANG 310

[Close]
BLAST of Cp4.1LG06g09490.1 vs. NCBI nr
Match: gi|659126202|ref|XP_008463062.1| (PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-20
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 

Query: 103 YLQYSHLIQNSGENSGQPAATFDRVLCNSPFVNPNSLISSSGTSSGALNFDLPFAQQQIA 162
           YLQYSH+  NS E S Q    F+R+LCNS  VNP+ L+SSSG S    NF  PF+ QQ+ 
Sbjct: 227 YLQYSHMFPNSRETSSQAVPAFERMLCNSTSVNPSPLVSSSGVS----NFPFPFSPQQLR 286

Query: 163 YFRPPENQSHGGGDSSMPPPTEFGYRPPATG 194
           ++ PP+NQS GGG SSMP  T F YRPPA+G
Sbjct: 287 HYGPPKNQSQGGGGSSMPSSTGFSYRPPASG 313

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g09490.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09490.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBY0_CUCSA1.6e-2261.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G017030 PE=4 SV=1[more]
A0A0C7KKK2_CUCSA1.6e-2261.54Ethylene-responsive transcription factor 114 OS=Cucumis sativus PE=2 SV=1[more]
BLAST of Cp4.1LG06g09490.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG06g09490.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778709855|ref|XP_004138542.2|2.2e-2261.54PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis sativus... [more]
gi|700190683|gb|KGN45887.1|2.2e-2261.54hypothetical protein Csa_6G017030 [Cucumis sativus][more]
gi|659126202|ref|XP_008463062.1|4.7e-2057.14PREDICTED: ethylene-responsive transcription factor ERF110-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG06g09490Cp4.1LG06g09490gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09490.1:five_prime_utr:001Cp4.1LG06g09490.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09490.1:cds:002Cp4.1LG06g09490.1:cds:002CDS
Cp4.1LG06g09490.1:cds:001Cp4.1LG06g09490.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG06g09490.1Cp4.1LG06g09490.1-proteinpolypeptide