Cp4.1LG05g13970.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG05g13970.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGb|AAD25831.1
LocationCp4.1LG05 : 9771073 .. 9771573 (-)
Sequence length501
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTATTTTTCAATCGCCAAAACAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAGATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGATGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTATGGCGAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATTGAGATCTCTCTCCCGACCGGTCATTACGTCAGCCACGAGTTCGAGGACGAGGAAGAGGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAGGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCAATGAGGAGGAGAATTTGATCGAGATCGACATATCTATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGAAGCAAGGAAGTAA

mRNA sequence

ATGCTTTATTTTTCAATCGCCAAAACAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAGATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGATGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTATGGCGAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATTGAGATCTCTCTCCCGACCGGTCATTACGTCAGCCACGAGTTCGAGGACGAGGAAGAGGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAGGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCAATGAGGAGGAGAATTTGATCGAGATCGACATATCTATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGAAGCAAGGAAGTAA

Coding sequence (CDS)

ATGCTTTATTTTTCAATCGCCAAAACAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAGATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGATGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTATGGCGAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATTGAGATCTCTCTCCCGACCGGTCATTACGTCAGCCACGAGTTCGAGGACGAGGAAGAGGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAGGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCAATGAGGAGGAGAATTTGATCGAGATCGACATATCTATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGAAGCAAGGAAGTAA

Protein sequence

MLYFSIAKTNSFPIEKFIEEEKKEVTFVSDRRSSPTAGGLLPESECADDNFTTTDDSEVGWGAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEEDDMSSCYRELPEFEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEARK
BLAST of Cp4.1LG05g13970.1 vs. TrEMBL
Match: A0A0A0KCP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 115/176 (65.34%), Postives = 138/176 (78.41%), Query Frame = 1

Query: 1   MLYFSIAKTNSFPIEKFIEEEK-----KEVTFVSDR-----RSSPTAGGLLPESECADDN 60
           MLYFSI+K NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDN
Sbjct: 3   MLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDN 62

Query: 61  FTTTDDSEVGWGAFDRFMAKTLD--QSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEE 120
           FTTT++SEV W  FD    KT +  +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+E
Sbjct: 63  FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 122

Query: 121 EDDMSSCYRELPEFEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
            DD+S  Y++L +F  QRKNL+E+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 123 -DDISFRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

BLAST of Cp4.1LG05g13970.1 vs. TrEMBL
Match: A0A061DM67_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-22
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1

Query: 40  LLPESECADDNFTTTDDSEVGWGAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSH 99
           +L E+EC D   +TT+DSEV W  F   + ++ D SD GSISDE+SLIEISLP GHYV H
Sbjct: 129 VLSENECVDQ-LSTTEDSEVDW-PFQDNIDQSPDYSD-GSISDEDSLIEISLPGGHYVGH 188

Query: 100 EFEDEEEEEEDDMSSCYRELPEFEK----QRKNLMELLAEINDINEEENLIEIDISMGSI 159
           +       EE    S  ++LP+F      Q+++LMELLAE N++NEE+NLIEIDISMGSI
Sbjct: 189 K-------EEKPKFSMQQKLPDFMPESFFQQRSLMELLAEFNEMNEEDNLIEIDISMGSI 247

Query: 160 KYSRFEIEA 165
           K SRFEIEA
Sbjct: 249 KCSRFEIEA 247

BLAST of Cp4.1LG05g13970.1 vs. TrEMBL
Match: B9SW40_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0346450 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-22
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 1

Query: 43  ESECADDNFTTTDDSEVGWGAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE 102
           ESEC   + TT++DSEV +  F   M ++ D SD GSISDE+SLIEI+LP+GHY+ H+  
Sbjct: 109 ESECLGRSSTTSEDSEVNYWQFQDHMLQSPDFSD-GSISDEDSLIEIALPSGHYIGHK-- 168

Query: 103 DEEEEEEDDMSSCYRELPEFEK----QRKNLMELLAEINDIN-EEENLIEIDISMGSIKY 162
            E EE++D  SS  ++L +F      ++  LMELLAE+ND+N EEENLIEIDISMGSIK 
Sbjct: 169 -ETEEDQDLKSSSQKKLQDFVPGSFFKQHGLMELLAELNDMNIEEENLIEIDISMGSIKC 228

Query: 163 SRFEIEA 165
            RFEIEA
Sbjct: 229 PRFEIEA 231

BLAST of Cp4.1LG05g13970.1 vs. TrEMBL
Match: A0A067K124_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18500 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 81/174 (46.55%), Postives = 106/174 (60.92%), Query Frame = 1

Query: 13  PIEKFIEEEKKEVT-------FVSDR-----RSSPTAGGLLPESECADDNF----TTTDD 72
           P+EK IE+E   V         V D+      S         E E  +DN+    +T++D
Sbjct: 21  PVEKSIEDETISVPDQGSSPKIVQDKDIVSKESKKEEDQEEEEEEEEEDNYLARSSTSED 80

Query: 73  SEVGWGAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEEDDMSSCY 132
           SEV W   D+   ++ D SD GSISDEESLIEI+LP+GHY+ H   ++E+EE +   +  
Sbjct: 81  SEVEWSFQDKIF-RSSDCSD-GSISDEESLIEIALPSGHYIGHN--NKEDEESNKFINMR 140

Query: 133 RELPEFE------KQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
           ++LP+F       KQ   LMELLAE+ND+NEEENLIEIDIS+GSIK  RFEIEA
Sbjct: 141 KKLPDFASAGSLLKQHGGLMELLAELNDMNEEENLIEIDISIGSIKCPRFEIEA 190

BLAST of Cp4.1LG05g13970.1 vs. TrEMBL
Match: W9RVQ6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014260 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.2e-20
Identity = 76/157 (48.41%), Postives = 96/157 (61.15%), Query Frame = 1

Query: 19  EEEKKEVTFVSDRRSSPTAGGLLPESECADDNFTTTDDSEVGWGAFDRFMA--KT--LDQ 78
           E E +E   +S   S  +   L   S+   D+ + T+DSE  W   D   A  KT     
Sbjct: 46  ENESQEHQDMSSHVSVSSQNSLSELSDQCLDHSSITEDSEAEWPFRDNISAGRKTAVFSD 105

Query: 79  SDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEE------DDMSSCYREL-PEFEKQRK 138
            D+GSISDEESLIEI+LP+GHYV H+ +    +E+        M +    L PE   +++
Sbjct: 106 DDDGSISDEESLIEIALPSGHYVGHDHDGYLNKEKLVFNVNQKMPADLNNLFPECIFKQR 165

Query: 139 NLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
           +LMELLAEIND+NEEENLIEIDISMGSIK SRFEIEA
Sbjct: 166 SLMELLAEINDMNEEENLIEIDISMGSIKCSRFEIEA 202

BLAST of Cp4.1LG05g13970.1 vs. TAIR10
Match: AT2G04480.1 (AT2G04480.1 unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-17
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1

Query: 62  GAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEEDDMSSCYRELPE 121
           G  +  + KT ++ D+G+I D+ESLIE+SLP+GHY+ H +   +          + ++ +
Sbjct: 155 GKSEENLEKTNEEDDDGAIPDDESLIELSLPSGHYLGHHYNSNKNH-----LYIHNKVQD 214

Query: 122 FEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
           F      L +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Sbjct: 215 FR-----LFDLLNEINDFTEEDNLIEIDISIGSIKYSRFEIKA 247

BLAST of Cp4.1LG05g13970.1 vs. TAIR10
Match: AT5G35870.1 (AT5G35870.1 unknown protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-13
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1

Query: 73  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEEDDMSSCYRELPEFEKQRKNLMEL 132
           +  D+G+I DEESLIE+SLP+GHY+ H +     ++  D    Y  +P+F      L++L
Sbjct: 116 NDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQ--DQKIMYNNIPDF-----RLIQL 175

Query: 133 LAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
            AE     E++NLIEIDIS+GSIK SRF+I+A
Sbjct: 176 SAEY----EDDNLIEIDISIGSIKCSRFQIKA 196

BLAST of Cp4.1LG05g13970.1 vs. NCBI nr
Match: gi|778712376|ref|XP_011656887.1| (PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 115/176 (65.34%), Postives = 138/176 (78.41%), Query Frame = 1

Query: 1   MLYFSIAKTNSFPIEKFIEEEK-----KEVTFVSDR-----RSSPTAGGLLPESECADDN 60
           MLYFSI+K NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDN
Sbjct: 56  MLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDN 115

Query: 61  FTTTDDSEVGWGAFDRFMAKTLD--QSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEE 120
           FTTT++SEV W  FD    KT +  +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+E
Sbjct: 116 FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 175

Query: 121 EDDMSSCYRELPEFEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
            DD+S  Y++L +F  QRKNL+E+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 176 -DDISFRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 228

BLAST of Cp4.1LG05g13970.1 vs. NCBI nr
Match: gi|700191405|gb|KGN46609.1| (hypothetical protein Csa_6G112470 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 115/176 (65.34%), Postives = 138/176 (78.41%), Query Frame = 1

Query: 1   MLYFSIAKTNSFPIEKFIEEEK-----KEVTFVSDR-----RSSPTAGGLLPESECADDN 60
           MLYFSI+K NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDN
Sbjct: 3   MLYFSISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDN 62

Query: 61  FTTTDDSEVGWGAFDRFMAKTLD--QSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEE 120
           FTTT++SEV W  FD    KT +  +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+E
Sbjct: 63  FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 122

Query: 121 EDDMSSCYRELPEFEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
            DD+S  Y++L +F  QRKNL+E+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 123 -DDISFRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

BLAST of Cp4.1LG05g13970.1 vs. NCBI nr
Match: gi|659128354|ref|XP_008464163.1| (PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 2.9e-47
Identity = 113/179 (63.13%), Postives = 140/179 (78.21%), Query Frame = 1

Query: 1   MLYFSIAKTNSFPIEKFI-------EEEKKEVTFVSDR-----RSSPTAGGLLPESECAD 60
           MLYFSI+K +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECAD
Sbjct: 56  MLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECAD 115

Query: 61  DNFTTTDDSEVGWGAFDR--FMAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFED-EE 120
           DNFTTT++SEV W  FD   + A++  +SD+GSISDEESLIEI+LPTGHYVS +F+D +E
Sbjct: 116 DNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDE 175

Query: 121 EEEEDDMSSCYRELPEFEKQRKNLMELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 165
           +E+EDD    Y++L +F  Q+KNL+E+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 176 DEDEDDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 232

BLAST of Cp4.1LG05g13970.1 vs. NCBI nr
Match: gi|1000944822|ref|XP_015581495.1| (PREDICTED: uncharacterized protein LOC8264016 [Ricinus communis])

HSP 1 Score: 116.3 bits (290), Expect = 5.1e-23
Identity = 79/153 (51.63%), Postives = 107/153 (69.93%), Query Frame = 1

Query: 19  EEEKKEVTFVSDR--RSSPTAGGLLPESECADDNFTTTDDSEVGWGAFDRFMAKTLDQSD 78
           +EE+++ + + +   RSSP    +L ESEC   + TT++DSEV +  F   M ++ D SD
Sbjct: 99  DEEEEDRSQIGEYLIRSSPI---MLSESECLGRSSTTSEDSEVNYWQFQDHMLQSPDFSD 158

Query: 79  EGSISDEESLIEISLPTGHYVSHEFEDEEEEEEDDMSSCYRELPEFEK----QRKNLMEL 138
            GSISDE+SLIEI+LP+GHY+ H+   E EE++D  SS  ++L +F      ++  LMEL
Sbjct: 159 -GSISDEDSLIEIALPSGHYIGHK---ETEEDQDLKSSSQKKLQDFVPGSFFKQHGLMEL 218

Query: 139 LAEINDIN-EEENLIEIDISMGSIKYSRFEIEA 165
           LAE+ND+N EEENLIEIDISMGSIK  RFEIEA
Sbjct: 219 LAELNDMNIEEENLIEIDISMGSIKCPRFEIEA 244

BLAST of Cp4.1LG05g13970.1 vs. NCBI nr
Match: gi|590712352|ref|XP_007049365.1| (Uncharacterized protein TCM_002409 [Theobroma cacao])

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 73/129 (56.59%), Postives = 91/129 (70.54%), Query Frame = 1

Query: 40  LLPESECADDNFTTTDDSEVGWGAFDRFMAKTLDQSDEGSISDEESLIEISLPTGHYVSH 99
           +L E+EC D   +TT+DSEV W  F   + ++ D SD GSISDE+SLIEISLP GHYV H
Sbjct: 129 VLSENECVDQ-LSTTEDSEVDW-PFQDNIDQSPDYSD-GSISDEDSLIEISLPGGHYVGH 188

Query: 100 EFEDEEEEEEDDMSSCYRELPEFEK----QRKNLMELLAEINDINEEENLIEIDISMGSI 159
           +       EE    S  ++LP+F      Q+++LMELLAE N++NEE+NLIEIDISMGSI
Sbjct: 189 K-------EEKPKFSMQQKLPDFMPESFFQQRSLMELLAEFNEMNEEDNLIEIDISMGSI 247

Query: 160 KYSRFEIEA 165
           K SRFEIEA
Sbjct: 249 KCSRFEIEA 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCP7_CUCSA1.2e-4765.34Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112470 PE=4 SV=1[more]
A0A061DM67_THECC3.0e-2256.59Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1[more]
B9SW40_RICCO6.6e-2256.69Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0346450 PE=4 SV=1[more]
A0A067K124_JATCU1.1e-2146.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18500 PE=4 SV=1[more]
W9RVQ6_9ROSA6.2e-2048.41Uncharacterized protein OS=Morus notabilis GN=L484_014260 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G04480.15.7e-1746.60 unknown protein[more]
AT5G35870.18.6e-1346.74 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778712376|ref|XP_011656887.1|1.7e-4765.34PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus][more]
gi|700191405|gb|KGN46609.1|1.7e-4765.34hypothetical protein Csa_6G112470 [Cucumis sativus][more]
gi|659128354|ref|XP_008464163.1|2.9e-4763.13PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo][more]
gi|1000944822|ref|XP_015581495.1|5.1e-2351.63PREDICTED: uncharacterized protein LOC8264016 [Ricinus communis][more]
gi|590712352|ref|XP_007049365.1|4.3e-2256.59Uncharacterized protein TCM_002409 [Theobroma cacao][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g13970Cp4.1LG05g13970gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13970.1:cds:001Cp4.1LG05g13970.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g13970.1Cp4.1LG05g13970.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 122..142
scor
NoneNo IPR availablePANTHERPTHR35708FAMILY NOT NAMEDcoord: 29..164
score: 1.4