Cp4.1LG05g10570.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g10570.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	MYB transcription factor
Location	Cp4.1LG05 : 6987264 .. 6988333 (+)
Sequence length	785

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACTCTCTAAGGGGTTCTGATGAGAATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGCCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGTATTATTAATTTCTCTCTCTATGAACTGCTGCGCCGCCGTGGCCGGCGGAGTATGGAATGGAAGTTTTGTTTTCCGATGAGGGTTTTCAATATATATATATATATATTTTTTTTTTTTGGGTTGAAAAACATATATTAAATTACATTTTTGACGTTTTTAATTTAAAATTTGTAATGATTTAATTGAAAAAATGATAGCTTGAAGGAAGTAAAAAAAAAAAAAAAAAATCAAANTATATGTAATCTTTTAAAGATAATTTCTTTTAAAATTTTTGTTTTCGTAGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTGATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAGCAACATCCTAAGGTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAGAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCCGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAGTTTAGCAAAGTGAGAATTTTGTTATGGAGTGTGAGTTTCTCCTTGGTTGTCAAATGTAAGAGCAATAATGAATTTCCAACTATATTATATGAGAAAGAGAT

mRNA sequence

TGAACTCTCTAAGGGGTTCTGATGAGAATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGCCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTGATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAGCAACATCCTAAGGTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAGAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCCGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAGTTTAGCAAAGTGAGAATTTTGTTATGGAGTGTGAGTTTCTCCTTGGTTGTCAAATGTAAGAGCAATAATGAATTTCCAACTATATTATATGAGAAAGAGAT

Coding sequence (CDS)

ATGAGAATGATAGGATCAAGAAGCAGCAGCAGCAGCAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCTGCGGCAGTGGAAGCAGTGGCGTTACGTGCTACAGAGGCCACTGGCGGCCGGCGGAGGACAATAAACTCCGCCAGCTTGTTGAACAGTTTGGCCCTCAGAATTGGAATTACATTGCTGAACATTTTGAGGCTAGATCTGGAAAAAGCTGTAGATTGAGATGGTATAATCAACTGGATCCGAATATAAACAAGAACCCATTTACGGAGGAAGAAGAAGAGAGGCTTTTGATATTTCAACGGCTTCACGGGAACAAATGGGCGTTAATAGCCCGACACTTCAAAGGAAGAACAGACAATGCAGTGAAGAATCACTACCATGTTATAATGGCTAGAAGGAGAAGAGAACGTTTCACAATATTCACTAACAACAGCAACATCCTAAGGTCTCGTCATTGCTTATTGCCCTTTTCGAACGTCCTCCAATCCTCCCATCAAAAGATGACCCCTAAATGGAGTCCTCTCACGGCGGGTCCGACGCTCGAGAATGGGCGTGGGAAGTCGGTGGCGGTGGTGGCATCGTCCGGGTCGGAAGAGATGAAGGGGGAGCAGAAGAGGAGGATTCCATTTATAGACTTTCTTGGTATGGGAAGCTCTTAG

Protein sequence

MRMIGSRSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNSNILRSRHCLLPFSNVLQSSHQKMTPKWSPLTAGPTLENGRGKSVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS

Homology

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BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 34  RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEE 93
           +G W P ED +LR+LV ++GP+NW  I++    RSGKSCRLRW NQL P +   PF+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 94  EERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARR 135
           +E +       GNKWA IAR   GRTDNAVKNH++  + R+
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

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BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=3 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 34  RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEE 93
           +G W   ED+K+ +LV+ +GP+ W+ IA H + R GK CR RW+N L+PNI K  +++EE
Sbjct: 201 KGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHLNPNIKKEAWSDEE 260

Query: 94  EERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNSNILRSRH 153
           ++ +     +HGNKWA IA+   GRTDNA+KNH++  M R          +N+N+    H
Sbjct: 261 DQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR---------VSNNNVHLKSH 320

Query: 154 CLLPFSNVLQSSHQKMTPK 173
            +    + L S   + +PK
Sbjct: 321 AI---EHSLSSQDNQDSPK 327

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BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-23
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 34  RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEE 93
           +G W   EDN +  LVE++GP+ W+ I++H   R GK CR RW+N L+P INKN +T+EE
Sbjct: 87  KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEE 146

Query: 94  EERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYH 129
           E  L+   +++GNKWA + +   GR+DN++KNH++
Sbjct: 147 ELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWN 181

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BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-22
Identity = 52/133 (39.10%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 34  RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEE 93
           +G W   ED ++ +LV ++GP+ W+ IA+H + R GK CR RW+N L+P + K+ +TEEE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 94  EERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNSNILRSRH 153
           +  +    +  GN+WA IA+   GRTDNA+KNH++  M RR+ E+     N+S    ++H
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM-RRKEEQEGYLQNSSK--TNQH 208

Query: 154 CLLPFSNVLQSSH 167
            ++  +N  +S+H
Sbjct: 209 TIV--TNFPKSNH 216

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BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-22
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 34  RGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTEEE 93
           +G W   ED ++ +LV+++GP+ W+ IA+H + R GK CR RW+N L+P + K  +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 94  EERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARR 135
           +  +    +  GN+WA IA+   GRTDNA+KNH++  M R+
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 192

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BLAST of Cp4.1LG05g10570.1 vs. TrEMBL
Match: A0A0A0LM98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302300 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-80
Identity = 168/218 (77.06%), Postives = 178/218 (81.65%), Query Frame = 1


Query: 7   RSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEA 66
           RS SSSS GG  GGGG   GSSGV+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 
Sbjct: 3   RSKSSSSSGGSSGGGG---GSSGVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEG 62

Query: 67  RSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNH 126
           RSGKSCRLRWYNQLDPNINKNPF+EEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVKNH
Sbjct: 63  RSGKSCRLRWYNQLDPNINKNPFSEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVKNH 122

Query: 127 YHVIMARRRRERFTIFTN-NSNILRSRHCLLPFSNVLQSSHQKMTPKWSPLTAGP--TLE 186
           YHVIMARRRRERFTIFTN N N    RH LL FS    +       KW+PLTAG    L 
Sbjct: 123 YHVIMARRRRERFTIFTNHNKNNNTIRHSLLSFSKTTAA------VKWTPLTAGAPVLLG 182

Query: 187 NGRGK-SVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 221
           NGRGK S+  V +SGS E + + KRRIPFIDFLGMGSS
Sbjct: 183 NGRGKSSLPAVVASGSGEGE-DHKRRIPFIDFLGMGSS 210

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TrEMBL
Match: W9QM04_9ROSA (Transcription factor OS=Morus notabilis GN=L484_020704 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.5e-49
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 19  GGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYN 78
           G     S   G  CYRGHWRPAED KLRQLVE +GPQNWN+IA+H + RSGKSCRLRWYN
Sbjct: 2   GKSSSSSDHGGKNCYRGHWRPAEDEKLRQLVEHYGPQNWNFIADHLQGRSGKSCRLRWYN 61

Query: 79  QLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 138
           QLDPNINK PFTEEEEERLL   R++GNKWA IA++F+GRTDNAVKNHYHV+MARR+RER
Sbjct: 62  QLDPNINKKPFTEEEEERLLSAHRIYGNKWACIAKYFQGRTDNAVKNHYHVVMARRKRER 121

Query: 139 FTIFTNN 146
           FT + ++
Sbjct: 122 FTQYQHH 128

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TrEMBL
Match: B9SKW8_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1463020 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.2e-48
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 20  GGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQ 79
           G G  S  SG +C+RGHWRPAED KLRQLV+Q+GPQNWN+IAEH + RSGKSCRLRWYNQ
Sbjct: 4   GRGSSSSDSGKSCHRGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQGRSGKSCRLRWYNQ 63

Query: 80  LDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERF 139
           LDPNINK PFTEEEEERLL   ++ GN+WA IAR F GRTDNAVKNHYHV+MARR+RER 
Sbjct: 64  LDPNINKKPFTEEEEERLLKAHQIQGNRWASIARLFPGRTDNAVKNHYHVVMARRKRERL 123

Query: 140 TI 142
           ++
Sbjct: 124 SL 125

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TrEMBL
Match: B9HER9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04140g PE=4 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 4.6e-47
Identity = 94/154 (61.04%), Postives = 113/154 (73.38%), Query Frame = 1


Query: 21  GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQL 80
           G   S     +C+RGHWRPAED KLRQLV+Q+GPQNWN+IAEH + RSGKSCRLRWYNQL
Sbjct: 6   GSSSSDDGKTSCHRGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQGRSGKSCRLRWYNQL 65

Query: 81  DPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFT 140
           DPNINK PFTE+EEERLL   ++HGN+WA I+R F GRTDNAVKNHYHV+MARR+RER  
Sbjct: 66  DPNINKRPFTEDEEERLLKAHQIHGNRWASISRLFPGRTDNAVKNHYHVVMARRKRERCL 125

Query: 141 IFTNNSNILRSRHCLLPFSNVLQSSHQKMTPKWS 175
            F    N  + ++      + L+S+    TP  S
Sbjct: 126 TFHGKRNNFQVQYST---DHHLRSNRNSSTPPGS 156

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TrEMBL
Match: B9H486_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06410g PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.0e-46
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = 1


Query: 21  GGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQL 80
           G   S S   +C+RGHWRPAED KLRQLV+Q+GP NWN+IAEH + RSGKSCRLRWYNQL
Sbjct: 6   GSSSSDSGRTSCHRGHWRPAEDEKLRQLVDQYGPHNWNFIAEHLQGRSGKSCRLRWYNQL 65

Query: 81  DPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER-F 140
           DPNINK PFTEEEEERLL    + GN+WA IAR F GRTDNAVKNHYHV+MARR+RER  
Sbjct: 66  DPNINKRPFTEEEEERLLRAHHIQGNRWASIARLFPGRTDNAVKNHYHVVMARRKRERCL 125

Query: 141 TIFTNNSN 148
           T+    SN
Sbjct: 126 TVHGKRSN 133

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10
Match: AT4G33450.1 (AT4G33450.1 myb domain protein 69)

HSP 1 Score: 188.0 bits (476), Expect = 6.4e-48
Identity = 90/143 (62.94%), Postives = 107/143 (74.83%), Query Frame = 1


Query: 31  TCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFT 90
           +C RGHWRP ED+ LRQLVEQ+GP+NWN+IA+H   RSGKSCRLRWYNQLDPNI K PFT
Sbjct: 16  SCQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFT 75

Query: 91  EEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIFTNNSNILR 150
           EEEEERLL   R+ GN+WA IAR F GRTDNAVKNH+HVIMARR+RE F+  T  S   +
Sbjct: 76  EEEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFS-STATSTFNQ 135

Query: 151 SRHCLLPFSNVLQSSHQKMTPKW 174
           + H +L  S+ L   ++     W
Sbjct: 136 TWHTVLSPSSSLTRLNRSHFGLW 157

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-47
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 1


Query: 32  CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPFTE 91
           C RGHWRPAED KLR+LVEQFGP NWN IA+    RSGKSCRLRW+NQLDP IN+NPFTE
Sbjct: 3   CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTE 62

Query: 92  EEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 139
           EEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR RER
Sbjct: 63  EEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-45
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 1


Query: 30  VTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNPF 89
           + C RGHWRPAED KL+ LVEQ+GP NWN IA     RSGKSCRLRW+NQLDP IN+NPF
Sbjct: 2   IMCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPF 61

Query: 90  TEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 138
           TEEEEERLL   R+HGN+W++IAR F GRTDNAVKNH+HVIMARR R+
Sbjct: 62  TEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ 109

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-43
Identity = 81/113 (71.68%), Postives = 89/113 (78.76%), Query Frame = 1


Query: 25  SGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNI 84
           SG +   C RGHWRP ED KL++LV QFGPQNWN I+ H   RSGKSCRLRW+NQLDP I
Sbjct: 84  SGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRI 143

Query: 85  NKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRE 138
           NK  FTEEEE RLL   R +GNKWALI+R F GRTDNAVKNH+HVIMARR RE
Sbjct: 144 NKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42
Identity = 100/237 (42.19%), Postives = 133/237 (56.12%), Query Frame = 1


Query: 23  CGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDP 82
           CG  SS  +  RGHWRPAED KL++LV  +GPQNWN IAE  + RSGKSCRLRW+NQLDP
Sbjct: 97  CGH-SSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDP 156

Query: 83  NINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 142
            IN+  FTEEEEERL+   RL+GNKWA+IAR F GRTDN+VKNH+HVIMAR+ RE+ + +
Sbjct: 157 RINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY 216

Query: 143 TNNSNILRSRHCLLPFSNV-------------LQSSHQKMTPKWSPLTAGPTLENGRGKS 202
                ++  +  + P  ++             L SS  K      P   G   EN   +S
Sbjct: 217 RRRKTMVSLKPLINPNPHIFNDFDPTRLALTHLASSDHKQLMLPVPCFPGYDHEN---ES 276

Query: 203 VAVVASSGSEEMKGE---------------------------QKRRIPFIDFLGMGS 220
             +V    ++ M G+                           ++++ PF DFLG+G+
Sbjct: 277 PLMVDMFETQMMVGDYIAWTQEATTFDFLNQTGKSEIFERINEEKKPPFFDFLGLGT 329

[Close]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr
Match: gi|659121938|ref|XP_008460890.1| (PREDICTED: transcriptional activator Myb [Cucumis melo])

HSP 1 Score: 310.1 bits (793), Expect = 3.2e-81
Identity = 172/224 (76.79%), Postives = 182/224 (81.25%), Query Frame = 1


Query: 3   MIGSRSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 62
           M+ SRSSSSS G  GGGG     GSSGV+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE
Sbjct: 1   MMRSRSSSSSGGSSGGGG-----GSSGVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAE 60

Query: 63  HFEARSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNA 122
           HFE RSGKSCRLRWYNQLDPNINKNPF+EEEEERLL+FQ+LHGNKWALIARHFKGRTDNA
Sbjct: 61  HFEGRSGKSCRLRWYNQLDPNINKNPFSEEEEERLLMFQQLHGNKWALIARHFKGRTDNA 120

Query: 123 VKNHYHVIMARRRRERFTIFTN-NSNILRSRHCLLPFSNVLQSSHQKMTP--KWSPLTAG 182
           VKNHYHVIMARRRRERFTIFTN N N    RH LL FS        KMT   KW+PLTAG
Sbjct: 121 VKNHYHVIMARRRRERFTIFTNHNKNNNTIRHSLLSFS--------KMTTAVKWTPLTAG 180

Query: 183 P--TLENGRGK-SVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 221
               L NGRGK S+  V +SGS E + + KRRIPFIDFLGMGSS
Sbjct: 181 APVLLGNGRGKSSLTAVVASGSGEGE-DHKRRIPFIDFLGMGSS 210

[Close]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr
Match: gi|449459264|ref|XP_004147366.1| (PREDICTED: transcriptional activator Myb [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 1.6e-80
Identity = 168/218 (77.06%), Postives = 178/218 (81.65%), Query Frame = 1


Query: 7   RSSSSSSGGGGGGGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEA 66
           RS SSSS GG  GGGG   GSSGV+CYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFE 
Sbjct: 3   RSKSSSSSGGSSGGGG---GSSGVSCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEG 62

Query: 67  RSGKSCRLRWYNQLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNH 126
           RSGKSCRLRWYNQLDPNINKNPF+EEEEERLL+FQ+LHGNKWALIARHFKGRTDNAVKNH
Sbjct: 63  RSGKSCRLRWYNQLDPNINKNPFSEEEEERLLMFQQLHGNKWALIARHFKGRTDNAVKNH 122

Query: 127 YHVIMARRRRERFTIFTN-NSNILRSRHCLLPFSNVLQSSHQKMTPKWSPLTAGP--TLE 186
           YHVIMARRRRERFTIFTN N N    RH LL FS    +       KW+PLTAG    L 
Sbjct: 123 YHVIMARRRRERFTIFTNHNKNNNTIRHSLLSFSKTTAA------VKWTPLTAGAPVLLG 182

Query: 187 NGRGK-SVAVVASSGSEEMKGEQKRRIPFIDFLGMGSS 221
           NGRGK S+  V +SGS E + + KRRIPFIDFLGMGSS
Sbjct: 183 NGRGKSSLPAVVASGSGEGE-DHKRRIPFIDFLGMGSS 210

[Close]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr
Match: gi|1009146997|ref|XP_015891174.1| (PREDICTED: transcription factor MYB23-like [Ziziphus jujuba])

HSP 1 Score: 208.8 bits (530), Expect = 9.9e-51
Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 1


Query: 29  GVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQLDPNINKNP 88
           G  CYRGHWRPAED+KLRQLVE++GPQNWN+IAEH + RSGKSCRLRWYNQLDPNINK P
Sbjct: 14  GRNCYRGHWRPAEDDKLRQLVERYGPQNWNFIAEHLDGRSGKSCRLRWYNQLDPNINKKP 73

Query: 89  FTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERFTIF 143
           FTEEEEE+LL   +++GNKWA IA++F GRTDNAVKNHYHV+MARRRRERFT++
Sbjct: 74  FTEEEEEKLLSAHKIYGNKWACIAKYFHGRTDNAVKNHYHVVMARRRRERFTVY 127

[Close]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr
Match: gi|703078288|ref|XP_010090845.1| (Transcription factor [Morus notabilis])

HSP 1 Score: 202.2 bits (513), Expect = 9.3e-49
Identity = 92/127 (72.44%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 19  GGGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYN 78
           G     S   G  CYRGHWRPAED KLRQLVE +GPQNWN+IA+H + RSGKSCRLRWYN
Sbjct: 2   GKSSSSSDHGGKNCYRGHWRPAEDEKLRQLVEHYGPQNWNFIADHLQGRSGKSCRLRWYN 61

Query: 79  QLDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRER 138
           QLDPNINK PFTEEEEERLL   R++GNKWA IA++F+GRTDNAVKNHYHV+MARR+RER
Sbjct: 62  QLDPNINKKPFTEEEEERLLSAHRIYGNKWACIAKYFQGRTDNAVKNHYHVVMARRKRER 121

Query: 139 FTIFTNN 146
           FT + ++
Sbjct: 122 FTQYQHH 128

[Close]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr
Match: gi|255571377|ref|XP_002526637.1| (PREDICTED: transcription factor LAF1 [Ricinus communis])

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-48
Identity = 91/122 (74.59%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 20  GGGCGSGSSGVTCYRGHWRPAEDNKLRQLVEQFGPQNWNYIAEHFEARSGKSCRLRWYNQ 79
           G G  S  SG +C+RGHWRPAED KLRQLV+Q+GPQNWN+IAEH + RSGKSCRLRWYNQ
Sbjct: 4   GRGSSSSDSGKSCHRGHWRPAEDEKLRQLVDQYGPQNWNFIAEHLQGRSGKSCRLRWYNQ 63

Query: 80  LDPNINKNPFTEEEEERLLIFQRLHGNKWALIARHFKGRTDNAVKNHYHVIMARRRRERF 139
           LDPNINK PFTEEEEERLL   ++ GN+WA IAR F GRTDNAVKNHYHV+MARR+RER 
Sbjct: 64  LDPNINKKPFTEEEEERLLKAHQIQGNRWASIARLFPGRTDNAVKNHYHVVMARRKRERL 123

Query: 140 TI 142
           ++
Sbjct: 124 SL 125

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g10570.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	1.4e-25	51.49	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYBA_DICDI	2.3e-23	38.85	Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=3 SV=2	[more]
MB3R1_ARATH	5.1e-23	46.32	Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1	[more]
MYB_XENLA	3.3e-22	39.10	Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1	[more]
MYB_HUMAN	5.7e-22	43.56	Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2	[more]

BLAST of Cp4.1LG05g10570.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM98_CUCSA	1.1e-80	77.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302300 PE=4 SV=1	[more]
W9QM04_9ROSA	6.5e-49	72.44	Transcription factor OS=Morus notabilis GN=L484_020704 PE=4 SV=1	[more]
B9SKW8_RICCO	4.2e-48	74.59	R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1463020 PE=4...	[more]
B9HER9_POPTR	4.6e-47	61.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04140g PE=4 SV=2	[more]
B9H486_POPTR	3.0e-46	71.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06410g PE=4 SV=1	[more]

BLAST of Cp4.1LG05g10570.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33450.1	6.4e-48	62.94	myb domain protein 69	[more]
AT1G17950.1	2.4e-47	77.57	myb domain protein 52	[more]
AT1G73410.1	3.0e-45	73.15	myb domain protein 54	[more]
AT5G17800.1	2.8e-43	71.68	myb domain protein 56	[more]
AT1G69560.1	1.4e-42	42.19	myb domain protein 105	[more]

BLAST of Cp4.1LG05g10570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121938\|ref\|XP_008460890.1\|	3.2e-81	76.79	PREDICTED: transcriptional activator Myb [Cucumis melo]	[more]
gi\|449459264\|ref\|XP_004147366.1\|	1.6e-80	77.06	PREDICTED: transcriptional activator Myb [Cucumis sativus]	[more]
gi\|1009146997\|ref\|XP_015891174.1\|	9.9e-51	78.95	PREDICTED: transcription factor MYB23-like [Ziziphus jujuba]	[more]
gi\|703078288\|ref\|XP_010090845.1\|	9.3e-49	72.44	Transcription factor [Morus notabilis]	[more]
gi\|255571377\|ref\|XP_002526637.1\|	6.0e-48	74.59	PREDICTED: transcription factor LAF1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g10570	Cp4.1LG05g10570	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10570.1:five_prime_utr:001	Cp4.1LG05g10570.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10570.1:cds:001	Cp4.1LG05g10570.1:cds:001	CDS
Cp4.1LG05g10570.1:cds:002	Cp4.1LG05g10570.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10570.1:three_prime_utr:001	Cp4.1LG05g10570.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g10570.1	Cp4.1LG05g10570.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 33..82 score: 6.4E-12coord: 85..133 score: 1.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 35..87 score: 5.6E-26coord: 88..133 score: 2.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 33..127 score: 7.86
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 81..135 score: 23.595coord: 29..80 score: 15
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 5..138 score: 1.5
None	No IPR available	PANTHER	PTHR10641:SF525	MYB TRANSCRIPTION FACTOR	coord: 5..138 score: 1.5
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 37..97 score: 6.4
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..23 score: