Cp4.1LG05g02160.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g02160.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionFerredoxin family protein, expressed
LocationCp4.1LG05 : 1016030 .. 1021174 (+)
Sequence length1212
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTCTTGAGGAAGATTGCAGGATTTCTAGGGTTTTCCAAGGATGATGCTCACGACGTCAAGCACGAAGACGAAGAAGTTGAGTCCGGTAATCAGGCTCCCAAACGTGTCCATATGCAGGAAACTGGTCCTCGGAGGGGTTTCAGCGTCCCTGTCCAGGTCGCTGTCAATGTTCCTCAACCCGGCCCTATTCTTGTTCCTTCTAGTTCAGGCGATGGTGGAGTTCAGGTTCGTTCTATAATCTGTTTTGTTATCTTTTAATTTTCGAATGTTTGCTGGATTGTTTGTGTTTTCCTGTGTTTCAGAATAAATTCGGTAATTTTTCTCTACGGTGAGTCTATGGTCAAAGTGAGCGAGATTTTTTTTACACAGTTTCGCCGAAAATCTGTTATCGTCTTTGTTCGAACTAGGTCAATGAGATNGTTTTCCTGTGTTTCAGAATAAATTCGGTAATTTTTCTCTACGGTGAGTCTATGGTCAAAGTGAGCGAGATTTTTTTTACATAGTTTCGCCGAAAATCTGTTATCGTCGTTCGAACTAGGTCAATGAGAGTTTCAAATTTTCTGCTGCTTCCAATACCACGTCGATTATTGGATTTCCTGGTTTTGTCGGTGGATGCCAATTATATTTTCTTCTGCAAAAGGTTTCGTACTTTTGTATATGTTAGCTCAGGCTATCTGTAGCCATAACTTCTTTTCGAAATTGCTTTCTTTTGGCATTTATGAAGTTTTTCTGGCAACCTCGTCATAATAAATGCTTGTCAACTGTATTTAATCTTCGCCATTATTTTGTTCAACTAATTCCTCCCTTATAAATGCTTGTCAACTGTAAAAAAAACTTATGATTGTCTTGCTAATGAAGGCGCGGGTGATTGAATATGATAGATCTATGTGTTGTTTCTATGAATACCATGCAGATAAGAGGCAAAAGCAACAATAGAGGGTAAATAGAATTGAACTAGGAAGAGATAAACGTAAGCAAGTAATTTCCGTTTCCGTTTTATTGATTTTGAGTCTCATATGATAGTATCTGTGTTCAAATGGGCTGCATTAAATGTTAAATAGACGCCAAATCCTACACGGACTGTCTACAAGGGCATTGGTGACTAAGAAACCCACTTTCCGTAGAAATTAGAACCTAAAGCCACTTCTAGCTATAAGAAGACTTCCAGTTATACACATCTACGTTCTAACCAAGCTGAAACTGGAAAAAGAGAAAACTAAAACCATAGCCAACCAAAATGATTTCCAGAGTAGTTCCTAAAACCGAGAAACCTTTTGATGCAAAATTAAGGTTTAGGCTATTCCTTCTCTATCCACCAAAGTGATTTGCCAATTGAAATCATCACCTTATCCATCTGTATGGTTATATGTTTGCACGGTCCTACATGTCATGTTGTAAGTTGGGTGAGTTCCTCCTCTAAGAATTTGCTAGTACAAGAAGTAGGGTACTGAGGGATATCATCTGAATGAGGCCTCAACTCTGCTTCGTTTGGCTAGTATGAATTGCACTGTTCTCATGATGATCTCCAGTCATTACATGGTTTCTAATATTTGCAAGCTTTCCTTCTTCTTGTAATCATTCATTGGTACAAGGACTTGTTTATGGTGAAAGTGTAGTGATGATTTTTGTCATTTGCAAGGTTGCAATGATGACATGTTGCATGTGTGTTAATTTTTGCCATATATTTCCTTTAAATCAGGGTTTGACGTGGTATGCCAAACGTCTTCGGGTTGATGAAGATGGAGATGTAGCTGAACAGTTCCTCGACGAGGTCTTACCTGAGATGCCNAGTTTGCTCTCGTAGAAATGGCACGGACCATTTTTAATTTTCGCTTCTTGAGCAACTTCTTCAGCTTTGTAGAATCGATTAAATGTTTTTCACCTGTCTTTTTAGACTATAAGTTGTTTAGAGTTTGGGGATTCGAAGTTTTCTTTTCCCTCCATTTTTAGTGTGTACTGGTACATGGTATTTTATTGTATAATGGTTATGAATTTGAGGCGCGGGTAATAAATCCAAATACTGCAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAGCATATCCCTTCCTTTTGCTTGCAGGCACGGTATTGTTCTCTAATTCCCCAACTATTGATGAACTTTGCATATTCTTGCTCTAAGACATGTTTGAATATTATGTTAATGGCAAACACCATTGAATGTATGGGTGTTGGATCAACAATTTCGCTTGTCTCTGATGTTCTGTCCTCCGTCACTGGAAAACTGAGATCTGTCATAAAAATTTGTAGTTACTTAAGATCGTGGATTTATTTACCCCTAAAGTTGTTTCATTACGTACCCTATGGTAAGCATTGATCACTTTGGATGAATTATGTGCTATGATTTGAAAAAAGATACACACCCATGTATAGAAAATCTATCTATAATTTTGATACATTTCATTGATTTACATACATTAGGTTTCTGTCAAAGAATGTAAGTGCAGGTTCATGGTCCTGTTGTGTAAAAAACCGAATAACCGAATAGTTTACAACCAAACAAAAACCATTTCAAAATGAAAAAGCTCTCTTGCCCTTCTTTCAACTGATTCTTCCCTGCAATGAAGCCATTTTCTGCATCCTTTTGATCTCCATTATCGGTACATATCATGTTCTGAAAGTATTTGTTTTATGACAGGTTGTTGTACTAGTTGTGCTGTTCGAATAAAATCAGGCCAAATTAGACAGCCTGAAGCCCTTGGAATATCTGCCGAGTTGAAATCAAAGGCAATTCCTTTACTTGATTCTAGACTTGATTTTTTTCATGAAGTAAAATCTTAGATTATGCATCAGTATGTTCCAGTCAAGATTTAAGTGGAAGCTTTTCGTTCTATTTATGAATTTTGAGCCTGATTTGGTATGGTAGAAGCAACTGCTGCTCATTGAGGATAGGAATAACATAGTTGAGTTTGTATTCTACTGGTTACTGGATAGGAAAAGGAAGAACAATCAAGAGCTGGTCCTTGAATGCTTTTACAGGTCTCACTAGCAGAATATGCAGTTCTTGGCAAAATCATACAAAAAGATAAAAGAAAAAGAATACTGCAATTTGTATATCTATTTACCAAAATGCTTACCTGTGATTACAAAGGAAGAAGTTAGTGCAGTAGTAAAACCATTGACAACTTTCTGGATGATAACTGCATTGCTAATTGATATTCCTTATTATTCTCTACACTGCAGGGGTATGCACTTCTTTGCGTAGGTTTTCCAACCTCGGATGTTGAAGTAGAAACACAAGATGAGGATGAGGTATGTTTTCGAATATCTGCCACTCCTTAAGTTGAACCCAAATTCTGTTTGTTTGCCTAATTTTATATATTAGACATTTGGAGTTGGTATGATCATTCTTCATGCAAAAATTCACTACAATGCAGGTATATTGGCTTCAATTTGGANTTGCTATGATCATTCTTCATACAAAAATTCACTACAATGCAGGTATATTGGCTTCAATTTGGAAGATATTTTGCCCGGGGGCCAATTGTAAGTTCTTTACTTCCTTAAATCTATCAAAATTTACTGGATATGTGAAGTATTGGAAGAAAAATACAAAGGAAATATAAATCATGTTTTTTTTTTTTTTGCGGTTATGTTAAACAATTTATTCAATTTTCCAGGAGAGAGATGACTATGCTCTGGAGTTGGCTATGGCTGATGAGTAAACTATTGATCCTGGAGGATCTATGGACTGAGACATGAATGGTTTATTTCGAATCCTTTCTTTATTTGTATAGTTTTTGACTGTCAATATCATAGGAGATTCAAAGTAATTACCACTGCTTTTCTTTTTGACATTTTCTTTCATCACTAAGCTTCTCCAAAAGCCTTTTCTTGGTCGATAGAAAGTTTGTCTACTCTTGAACTANAGTAATTACCACTGTTTTTCTTTTTGACATTTTCTTTCATCACTAAGCTTCTCCAAGAGCCTTTTCTTGGTCGATAGAAAGTTTGTCTACTCTTGAACTAACCACACCCTCTCTTTTTGTAGGTTTGTCCCCTCATTGTGAACTCATAACTACTACAGTTTCAGTCCAAGAAATATGTAAGGAAAAAAAGGCCAAAAAGGGGTAAAAATTGGAGCAAGAAAGTACTGTCCAATGATGACAACTTCAAATTTCTTGTTACATTGTGAGACTCAGAATGTCTGTGTTGTGGATCCTAAAATAAACTAGAGATATGAAAGAAAGTAGAGAGGTTTGGGGGAAGTAATTGACCCATATTCATGTCAAGTTTTTCTAATATAAAATAGCAGGTAAAAAATCTCTATTTTGGGTAATTTTTTTAATGAAGGATGCATAAAGATGAAAGTTTATGACAAATCTAGATATTTTAAAGGAGAGTATGCTTTTGATTAGTAAACTTCCCCTGAGCACCTTGAAGGAAATTGGTGGATATTTGATTGGTTGAGTTGGTGCCATTATTACACAAAAGGTGCTCCTGCAAGGAAAAATGCTGTCAATTTGGTTGGACATGACTATTCATGATCAAATCAACTGTACAAAGCATTGACATATGATGACTATGGTTAAATTCAAGTCTTATTATTCCAATTTCATGACACTGTCTTCGATTTGTTGGCTAAGAACACTCTGTTTTTACTTAGACGACTTGGACATTCCTCTTTTCTACTTTTTGTGTTTGGACAATGACTCTCTTATTGTCAACCTCACATTTTGCTGTTTTGCTCTTGTCTACTGGGAGAGAATAAAAAAGTGGCATCTTTTCATATGCCATTTCCTCTTACTAATGCTTTCTTTCTAAGTTGTTAGGTCAATGTCAGCTTGAAGAACTCCATGCAGAAGAGGAAAATCAATGGAAAATCAGATTCCCTTATCAACTAACTCTTTGCTGCTCAATAATTCAGGTCCCCCACTCCTTTCTCCAAATCGTTATAATGCTTGACCTTCAAAACTGTGGTGCCTATTGCAAGCTTGCCTTGTTTTGTCTCCACTTTAGTCCCCTTCACATGCATGATTATGATCTTTTGTATGCCAATGGCGACTCATGTACCGTTCCGTTCTAATCAAAGTTGATTGTTATATAACAACGTATCAAACCATCTATTTTAACTGAAAGATCAATTCAAGCTGCTACATTAAAGGGTCGATCTGAA

mRNA sequence

ATGCGGAAGATTGCAGGATTTCTAGGGTTTTCCAAGGATGATGCTCACGACGTCAAGCACGAAGACGAAGAAGTTGAGTCCGGTAATCAGGCTCCCAAACGTGTCCATATGCAGGAAACTGGTCCTCGGAGGGGTTTCAGCGTCCCTGTCCAGGTCGCTGTCAATGTTCCTCAACCCGGCCCTATTCTTGTTCCTTCTAGTTCAGGCGATGGTGGAGTTCAGGGTTTGACGTGGTATGCCAAACGTCTTCGGGTTGATGAAGATGGAGATGTAGCTGAACAGTTCCTCGACGAGGTCTTACCTGAGATGCCNAGCGCGGGTAATAAATCCAAATACTGCAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAGCATATCCCTTCCTTTTGCTTGCAGGCACGGGGTATGCACTTCTTTGCGTAGGTTTTCCAACCTCGGATGTTGAAGTAGAAACACAAGATGAGGATGAGGTATATTGGCTTCAATTTGGAAGATATTTTGCCCGGGGGCCAATTGAGAGAGATGACTATGCTCTGGAGTTGGCTATGGCTGATGAGTAAACTATTGATCCTGGAGGATCTATGGACTGAGACATGAATGGTTTGTCCCCTCATTGTGAACTCATAACTACTACAGTTTCAGTCCAAGAAATATGTAAGGAAAAAAAGGCCAAAAAGGGGTAAAAATTGGAGCAAGAAAGTACTGTCCAATGATGACAACTTCAAATTTCTTGTTACATTGTGAGACTCAGAATGTCTGTGTTGTGGATCCTAAAATAAACTAGAGATATGAAAGAAAGTAGAGAGGTTTGGGGGAAGTAATTGACCCATATTCATGTCAAGTTTTTCTAATATAAAATAGCAGGTCAATGTCAGCTTGAAGAACTCCATGCAGAAGAGGAAAATCAATGGAAAATCAGATTCCCTTATCAACTAACTCTTTGCTGCTCAATAATTCAGGTCCCCCACTCCTTTCTCCAAATCGTTATAATGCTTGACCTTCAAAACTGTGGTGCCTATTGCAAGCTTGCCTTGTTTTGTCTCCACTTTAGTCCCCTTCACATGCATGATTATGATCTTTTGTATGCCAATGGCGACTCATGTACCGTTCCGTTCTAATCAAAGTTGATTGTTATATAACAACGTATCAAACCATCTATTTTAACTGAAAGATCAATTCAAGCTGCTACATTAAAGGGTCGATCTGAA

Coding sequence (CDS)

ATGCGGAAGATTGCAGGATTTCTAGGGTTTTCCAAGGATGATGCTCACGACGTCAAGCACGAAGACGAAGAAGTTGAGTCCGGTAATCAGGCTCCCAAACGTGTCCATATGCAGGAAACTGGTCCTCGGAGGGGTTTCAGCGTCCCTGTCCAGGTCGCTGTCAATGTTCCTCAACCCGGCCCTATTCTTGTTCCTTCTAGTTCAGGCGATGGTGGAGTTCAGGGTTTGACGTGGTATGCCAAACGTCTTCGGGTTGATGAAGATGGAGATGTAGCTGAACAGTTCCTCGACGAGGTCTTACCTGAGATGCCNAGCGCGGGTAATAAATCCAAATACTGCAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAGCATATCCCTTCCTTTTGCTTGCAGGCACGGGGTATGCACTTCTTTGCGTAGGTTTTCCAACCTCGGATGTTGAAGTAGAAACACAAGATGAGGATGAGGTATATTGGCTTCAATTTGGAAGATATTTTGCCCGGGGGCCAATTGAGAGAGATGACTATGCTCTGGAGTTGGCTATGGCTGATGAGTAA

Protein sequence

MRKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETGPRRGFSVPVQVAVNVPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGNKSKYCRISTYCTLPKLRAYPFLLLAGTGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMADE
Homology
[Close]
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match: A0A0A0LF42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902940 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.7e-38
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQPG 61
           RKIAG LGFSKDD+HDVK+ED++V+S    P RVHMQ TG PRRGF VPVQVAVN   PG
Sbjct: 5   RKIAGILGFSKDDSHDVKNEDDDVDSDTHPPDRVHMQATGLPRRGFGVPVQVAVNRSNPG 64

Query: 62  PILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSA 107
           PIL+PSSSGDGGVQGLTWYAK LR+DEDGDVAEQFL+EV+PE+ ++
Sbjct: 65  PILLPSSSGDGGVQGLTWYAKGLRIDEDGDVAEQFLEEVIPEVQTS 110

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match: M5WVW0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012773mg PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 1 

Query: 1   MRKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQP 60
           +RK+AG LGF+KDD H+VK   EE E  NQA  R + QETG PR+GFSVPVQVAV+   P
Sbjct: 4   LRKMAGMLGFTKDDGHEVKDNGEEDEDDNQAQNRANFQETGLPRKGFSVPVQVAVDRNLP 63

Query: 61  GPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGNKSK 112
           GP+LVP  SGDGGVQGL W+AKRLR+DEDGDVA++FLDEV P+M  +   S+
Sbjct: 64  GPVLVPCRSGDGGVQGLRWHAKRLRIDEDGDVADEFLDEVFPQMSVSTENSR 115

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match: A0A061GAG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015734 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-31
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGN----QAPK-RVHMQETG-PRRGFSVPVQVAVN 61
           R+IAG LGF +DD H+VK E++   S N    Q P  R   QETG PRRGFSVPVQVAV+
Sbjct: 5   RRIAGLLGFVRDDGHEVKEENDHHNSNNNNNNQPPSNRPVFQETGLPRRGFSVPVQVAVD 64

Query: 62  VPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGN 109
            PQPGP+L+P +SGDGGVQGL WYAKRLR+DEDGDVA++FLDEVLPE  SA +
Sbjct: 65  RPQPGPLLLPCTSGDGGVQGLKWYAKRLRIDEDGDVADEFLDEVLPETSSAAS 117

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match: W9RN67_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023280 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 72/111 (64.86%), Postives = 86/111 (77.48%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEV------ESGNQAPK---RVHMQETG-PRRGFSVPVQ 61
           R+IAGFLGF+KDD H+VK ED++       E GN A +   RVHM+ETG PR+GFSVPVQ
Sbjct: 5   RRIAGFLGFAKDDGHEVKDEDDDDHHHHHHEDGNTASQPRNRVHMKETGLPRKGFSVPVQ 64

Query: 62  VAVNVPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPE 103
           VAV+   PGP+L P +SGDGG+QGL WYAKRLRVDEDGDVA++F DEV  E
Sbjct: 65  VAVDRSHPGPLLAPCNSGDGGLQGLRWYAKRLRVDEDGDVADEFYDEVALE 115

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match: B9N2P0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08930g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-28
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDA-HDVKHEDEEVESG-------NQAPKRVHMQETG-PRRGFSVPVQV 61
           +++AGFLGF+KDD  H+VK + E+ E         NQAP R + QETG PR+GFSVP+QV
Sbjct: 5   KRLAGFLGFAKDDGGHEVKDQQEQEEDEEDHHQHPNQAPFRSNFQETGLPRKGFSVPLQV 64

Query: 62  AVNVPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSA 107
           AV  PQ GP++V  +SGDGGVQGL WYAKRLR+DEDGDVA++F DEVLP+  S+
Sbjct: 65  AVERPQLGPVIVSCNSGDGGVQGLRWYAKRLRIDEDGDVADEFFDEVLPDTSSS 118

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TAIR10
Match: AT1G32550.2 (AT1G32550.2 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-25
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 135 TGYALLCVGFPTSDVEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMADE 188
           TGYALLCVGFPTSD+EVETQDEDEVYWLQFGRYFARGPIERDDYALELAM DE
Sbjct: 142 TGYALLCVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 194

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TAIR10
Match: AT4G17960.1 (AT4G17960.1 unknown protein)

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-22
Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 2  RKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQPG 61
          +K+AG  GF ++    +K+E+++++       +   +ETG PR+GF VPVQVAV   Q G
Sbjct: 5  KKLAGVFGFGQEV---LKNEEDDIDVYGDGGNQQRFRETGLPRKGFGVPVQVAVERSQLG 64

Query: 62 PILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDE 99
          P+L P ++GDGG+QGL WY KRLRVDEDGDVA++FL+E
Sbjct: 65 PLLQPCANGDGGIQGLRWYTKRLRVDEDGDVADEFLEE 99

[Close]
BLAST of Cp4.1LG05g02160.1 vs. TAIR10
Match: AT5G46620.1 (AT5G46620.1 unknown protein)

HSP 1 Score: 95.1 bits (235), Expect = 4.8e-20
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1 

Query: 1   MRKIAGFLGFSKDDAHD----VKHEDEEVESGN-----------QAPKRVHMQETGPRRG 60
           ++K+ G LGF  +D       V+ ED +    N           +   +   +ETGPR+G
Sbjct: 4   LKKLTGILGFGHNDGGGGHGAVRDEDGDGGDNNTGTVSGDGDKRREENQTRFRETGPRKG 63

Query: 61  FSVPVQVAVNVPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDE 99
           F VPVQVAV    PGPIL P ++ DGGVQGL WY+ RL++DEDGDVA++FL++
Sbjct: 64  FGVPVQVAVERSNPGPILQPCAALDGGVQGLRWYSMRLKIDEDGDVADEFLED 116

[Close]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match: gi|659131989|ref|XP_008465957.1| (PREDICTED: uncharacterized protein LOC103503527 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 82/106 (77.36%), Postives = 94/106 (88.68%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQPG 61
           RKIAG LGFSKDD+HDVK+ED++V+S   AP RVHMQ TG PRRGFSVPVQVAVN   PG
Sbjct: 5   RKIAGILGFSKDDSHDVKNEDDDVDSDTHAPDRVHMQATGLPRRGFSVPVQVAVNRSNPG 64

Query: 62  PILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSA 107
           PIL+PSSSGDGGVQGLTWYAK LR+DEDGDVAEQFL+EV+PE+ ++
Sbjct: 65  PILLPSSSGDGGVQGLTWYAKGLRIDEDGDVAEQFLEEVIPEVQTS 110

[Close]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match: gi|449461517|ref|XP_004148488.1| (PREDICTED: uncharacterized protein LOC101221247 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQPG 61
           RKIAG LGFSKDD+HDVK+ED++V+S    P RVHMQ TG PRRGF VPVQVAVN   PG
Sbjct: 5   RKIAGILGFSKDDSHDVKNEDDDVDSDTHPPDRVHMQATGLPRRGFGVPVQVAVNRSNPG 64

Query: 62  PILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSA 107
           PIL+PSSSGDGGVQGLTWYAK LR+DEDGDVAEQFL+EV+PE+ ++
Sbjct: 65  PILLPSSSGDGGVQGLTWYAKGLRIDEDGDVAEQFLEEVIPEVQTS 110

[Close]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match: gi|595849451|ref|XP_007209726.1| (hypothetical protein PRUPE_ppa012773mg [Prunus persica])

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 1 

Query: 1   MRKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQP 60
           +RK+AG LGF+KDD H+VK   EE E  NQA  R + QETG PR+GFSVPVQVAV+   P
Sbjct: 4   LRKMAGMLGFTKDDGHEVKDNGEEDEDDNQAQNRANFQETGLPRKGFSVPVQVAVDRNLP 63

Query: 61  GPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGNKSK 112
           GP+LVP  SGDGGVQGL W+AKRLR+DEDGDVA++FLDEV P+M  +   S+
Sbjct: 64  GPVLVPCRSGDGGVQGLRWHAKRLRIDEDGDVADEFLDEVFPQMSVSTENSR 115

[Close]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match: gi|645265702|ref|XP_008238274.1| (PREDICTED: uncharacterized protein LOC103336916 [Prunus mume])

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 72/111 (64.86%), Postives = 85/111 (76.58%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETG-PRRGFSVPVQVAVNVPQPG 61
           RK+AG LGF+KDD H+VK   EE E  NQA  R + QETG PR+GFSVPVQVAV+   PG
Sbjct: 5   RKMAGMLGFTKDDGHEVKDNGEEDEDDNQAQNRANFQETGLPRKGFSVPVQVAVDRNLPG 64

Query: 62  PILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGNKSK 112
           P+LVP  SGDGGVQGL W AKRLR+DEDGDVA++FLDEV P+M  +   +K
Sbjct: 65  PVLVPCRSGDGGVQGLRWRAKRLRIDEDGDVADEFLDEVFPQMSVSTENNK 115

[Close]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match: gi|590675723|ref|XP_007039528.1| (Uncharacterized protein TCM_015734 [Theobroma cacao])

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 1 

Query: 2   RKIAGFLGFSKDDAHDVKHEDEEVESGN----QAPK-RVHMQETG-PRRGFSVPVQVAVN 61
           R+IAG LGF +DD H+VK E++   S N    Q P  R   QETG PRRGFSVPVQVAV+
Sbjct: 5   RRIAGLLGFVRDDGHEVKEENDHHNSNNNNNNQPPSNRPVFQETGLPRRGFSVPVQVAVD 64

Query: 62  VPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPSAGN 109
            PQPGP+L+P +SGDGGVQGL WYAKRLR+DEDGDVA++FLDEVLPE  SA +
Sbjct: 65  RPQPGPLLLPCTSGDGGVQGLKWYAKRLRIDEDGDVADEFLDEVLPETSSAAS 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g02160.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g02160.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF42_CUCSA9.7e-3875.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G902940 PE=4 SV=1[more]
M5WVW0_PRUPE2.1e-3264.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012773mg PE=4 SV=1[more]
A0A061GAG1_THECC2.3e-3166.37Uncharacterized protein OS=Theobroma cacao GN=TCM_015734 PE=4 SV=1[more]
W9RN67_9ROSA2.2e-2964.86Uncharacterized protein OS=Morus notabilis GN=L484_023280 PE=4 SV=1[more]
B9N2P0_POPTR1.8e-2860.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08930g PE=4 SV=1[more]
BLAST of Cp4.1LG05g02160.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32550.21.7e-2596.23 2Fe-2S ferredoxin-like superfamily protein[more]
AT4G17960.15.1e-2251.02 unknown protein[more]
AT5G46620.14.8e-2044.25 unknown protein[more]
BLAST of Cp4.1LG05g02160.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131989|ref|XP_008465957.1|1.3e-3877.36PREDICTED: uncharacterized protein LOC103503527 [Cucumis melo][more]
gi|449461517|ref|XP_004148488.1|1.4e-3775.47PREDICTED: uncharacterized protein LOC101221247 [Cucumis sativus][more]
gi|595849451|ref|XP_007209726.1|3.0e-3264.29hypothetical protein PRUPE_ppa012773mg [Prunus persica][more]
gi|645265702|ref|XP_008238274.1|1.5e-3164.86PREDICTED: uncharacterized protein LOC103336916 [Prunus mume][more]
gi|590675723|ref|XP_007039528.1|3.3e-3166.37Uncharacterized protein TCM_015734 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g02160Cp4.1LG05g02160gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g02160.1Cp4.1LG05g02160.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g02160.1:cds:007Cp4.1LG05g02160.1:cds:007CDS
Cp4.1LG05g02160.1:cds:006Cp4.1LG05g02160.1:cds:006CDS
Cp4.1LG05g02160.1:cds:005Cp4.1LG05g02160.1:cds:005CDS
Cp4.1LG05g02160.1:cds:004Cp4.1LG05g02160.1:cds:004CDS
Cp4.1LG05g02160.1:cds:003Cp4.1LG05g02160.1:cds:003CDS
Cp4.1LG05g02160.1:cds:002Cp4.1LG05g02160.1:cds:002CDS
Cp4.1LG05g02160.1:cds:001Cp4.1LG05g02160.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g02160.1:three_prime_utr:003Cp4.1LG05g02160.1:three_prime_utr:003three_prime_UTR
Cp4.1LG05g02160.1:three_prime_utr:002Cp4.1LG05g02160.1:three_prime_utr:002three_prime_UTR
Cp4.1LG05g02160.1:three_prime_utr:001Cp4.1LG05g02160.1:three_prime_utr:001three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 135..166
score: 3.
NoneNo IPR availablePANTHERPTHR35750FAMILY NOT NAMEDcoord: 1..108
score: 1.7