Cp4.1LG05g00640.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g00640.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGamma-tubulin complex component
LocationCp4.1LG05 : 665825 .. 671813 (+)
Sequence length3301
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGACGTTGAAGAAATCAAACGAGAGTACAAAACGAGGGAGTCCAATCCAACGTCCTGTTGAAAACCTAATTTCTTTGATCAACTCAACTCTGCCCTACTCCCCCGTCGAACTCCTCGCCGTCGCTTCGCCGGATTCGAGCCAAGGCGACGGCGCGGGAGGTTTGATTATCAGAATTCAGAGAAAAGAAGCTGAGAGGTACGGACTTAGATTTACGATTCACAAAGAAGACGGAGAAATTGAGGAGAATTTTGCGAACGGGTGATAGAAAGAGGTTGCTACGAAGTGGAATTAAAGTGGAGAGTTAGGGCGACTCGAAGTCCTCGCCAAATTAAGGTGAGCACCTGACATTAGGTTTTCTTGTATTACTGTTTGCATTTAGGGAAGGAGATCGGAGGAAGTTAAGGAAAGTTGCTCCTCGTTTTGACCGTTGTTTCCTTTAATGTTTCCTAATGTAGGCTGTATAATCATTGAAGTTTTCGCGGAATCTATCCATTACGCACTTTTTCTGGAGTAATTTAGTGGAAGATTTCTATGGAAGAGGCGAAAGAAATTTTGAAGGATAACAGAATTGAAGATATCAGTTGGCTTTGCTCGTTATCTGAATCAGAGCTTGTAAGTTCCATCTGGAATTTTTTGTATTAGACACCCACTCATTTTATGGTGTAAGCTTTTCTTACAAATATCGAGCATTCTTCTTGTGGTTGTTGAATAGCCACGCGAATTTTTATATTTTTTCCTATGAATTTTATTTGAAAGGATTAATGTCTTTTGCTTGATTTTGATAAAAATGGACGACGACCTGTATTAGGATTTCCATGTACTGTCACATTCAAAAGTACATTCAGTATGAGCTGTGTGGTTCGGATCATATGCTTATTGTTTCTATATATGATGTATGTGGCAGGACTTTCTGATTAGCATTAAAATGCTAGTTCTCCAGCGTGCAAAAGTAATTGGCCATGAAGATCTAGCTGAGAAATTTGATCTGAAGACACTACGTGCTATAGGTATTTCTACTTTCTGTGCTGTATTTCTTGTATTTGTGTTTCCTCTAATTATCTTATCATTGCTAGAATGCTAGTGTAAACTCTCACCTCTCTAGCATCCCTAGTGTACGGACACCGTGTTGCTTTCTATGTGCTATCTACTACATTAGTTGCTGAACAATTTTGCATTTACGGCGCTATCCATGCAGGGTTTATTTTGATGGAGCATCTTAAAGGACAACTTAGTGTGTCAGGTGTCCCAGATCAGTCTCAATTTTCTGCCTTAAATGGGTCCAACTTATTAGACAGCAGTCTTGAGAAAATTTTGTCAATTGATGATATAATGGCAAGCATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGTTGGTACTAACTACAAGTTTCTGCTATTTATTTGCAAGCATAGCAAAACATCATATTATTATAATTATTATTAATAGTTCAATAACATTTGAGGTGGAGGGATTAGTACCTTTGACATCTTTGACAAAAAATGGGGGTTCATGTCAAATATCTCATATTATTTATTGCATTGTTAGTTTGGAACTTTTGCATAGATATATATTTTTTTAAAAATATATATATATTTTCAGCCATCATGGTTTCCATATAAACTTGGTACCGATGCATTAGATATCAATGAGATCTTGCCTGTTTCTAATATTTTTTTCCCTTGAATGCCAGAATGGGCGTTCATATCATTAATTCATTCTCTAATTTGAGCTGGTTTCTTTCCATACTAAGTTTCTAAGGTATAGTACTGGATAGGCGTTGTTGCCAAAATCCTGACAAGGTAGTGCACCTAACCTTCACATGACAATGATAAAATTTGTTCAAGGGGGAAAAATGAAGCATGGAAGACAAGAAAAGCTTGCATATTGGTGTGGTGCTTGCCACATGTCTAATGGTTAAGTTAGCTAGGAGGAATTTAGTTTAGCAAGAACTTTAGGAATTGGAAGAACTTTGGACTTAGTTGGCTTTCCTTCTCCCAATAGAAGAAAGTGATTATATCCCCGTTTTGTTGATTCTTTCTGGGTTAGGGTAAAAGAGGATTGGAATTATTGGGCGGGACTAGGATCACACAAATCAGGGAATGTCGGACTCGGGTGCCGATAAGGAAACTTGGCTTCAGCCCAAGTTTCTTTTCTTTCTTTTGATTAGTGGCTGTGACCCGACTTTCTTCATGTTTAGCTTGTTTTTCACTGTGTTGGATTTTTTAGTCTCATTTGGTCCTTGACTTTCACGGTCTTTGTGCTTGTCCGTATGGTCCAATTTTACCTGGAACAACAGACCTTTTTTTTTTTTTTCCTTTCTGCCACTTCCCTGTCATGATTGGATTCAGGCCATTTTATTTTCTTAATATTTCTTGATTTATTATTTCAAATGCTATCACTTTAATTCTTTGCTCTCGTATTGGTTTTTTGTTTTGATAATTAGAAGAGAAAAAAAGGAAAACAAAAACAACTACATTTACCTTGTGGTTTTCATAAAGCCCTTATTCATATAAACTTTCATGGTTACGCTGATGCATTGGATACGTTGTAAATCAATAAGATGATGCCTGTTCGAAATGTTTTTGCTTTGAACTCCATGTTGCTATACTTTCACTCTCTAATTAGAGCTGGTTTCTTTTCTTTCCGTGTTTCTGAAACACAGTAGTAGATAGGAGTTTTTGACGGAATAATTTACTTTTTCCTGGCCTACATCTTTTTATTTTTTGCTACCTTCCTTCATTGTATGAATTTGGTTCATTCCATTTTATTTTCTATAATATTTATAGATTTACTAATTGAAATGCCATCACTTAAATTCTGTAATCTAAATAACTTCTGTGTTGTGCTTTTAAGTTAGTGCTGTTTTCCCCAATTTGTAAAGCCAACTTGAATCTCATATCTCTCATCTTTTCCCCCCTCCCTCTCTCCCTTTTCTAGGTCGCGGCCGAAGGCTGATTCTAGACCAAAGAAGAAGTTGTGAATTAGAAAATAGCAGAAGTAGACACAGATTCATGGAGGTTGTCTTGGCCTAACTGATGAACAATGCAGCTCCCACATTGCGAGACTTGGCGGTAATCCTGCAGCCATGATCACGCAAACAATTTTGTTAGCCTTTATTGTAATTGTTGTTGCGTCAAATCAGTAATCACGTTCCACTATTGTTGTATTGTTTCTATTTTGTTATAGTGTATGAAGCAAAGGAACCATTACAAATAAGTCGATGTTTTATTAATTTTTCAAGCTCAATCTGCTTTCATTTAATTGAAACCTCTCATGAGTTTTGATATTCGTATCGATGACATCATAGCTTTACGAAAAATTAACGATCCTTTTACATTGGAGCGATGGTGGTGGGAATCGGAGTATAATTCAATTCTTATTTCTTGTTAGAAGGTTGAAAACTCTTCTCATATTGATACATTCCCTTTTTTCTAGAGCTCTAATATTCTGGAGGATCGCTCGACATCTTTTTGCAGGTGACTATAACACGGAAGGAAATGAGTTCGACAATCTCATATGAGGTACTTCGACAACTTAGATAATGATTAAAAAATAGTTTCAACCCCAATAGAACATTAGAATGATATTAGCATTGGAACTAGTCTATATGTAATAGTTGAAACTCTATATCTGAATGCCTTTGAAAATGTTCTCTAAAAATATGCACAAAGCCAAAAGATTTGGGGCCTGAAATAGCCCTCAAATATGACGATAAAGTACTTCGCTACAGATCCTCTCCTGCCCCAAGGTTTCATTATTAGAAAAAAAACACGTTAAGCTGTTATGATCTAAGATCAAATGCTTTCATCTGATTGCAGATGGTATTCCATTAGTAGGAAGAACAGTAATGTGTCTCAAAGGGTGAGAAATTTCTTCGCCCCCGGCGTGCTTGACGAACTCGGCTGGTGAAAAGGATTCTCCATGGCAGACGCACAAAATACTGACCTCCAAGTTGGAGTATCTGTACAAGAACCCAGTGATGGTTTTGCCGTTGGGACCAACTCCGGTCGTCGAAACGCAGGGCATTTGCTGAAGGCTTGGCACATTTCGGCTAAGAATTTGAGGCTTTGGAAGTTCCTCATTCTCCATCTTCATGTTCTTTATTGACATGGAAGGAGACCTCTGGGAATTGAAAACAGATTTGTTGCTCGATCCAGTGATTGGCTCTTTCTTGTGGACATGGGATTCACCAGATTTCTCTTCACGTTGTGTCCTGTTCTCACTGCAAGGCTTTGGTTTATCATGATTCATAGAATCATTCGTATTTGGTTTCGGGTTCGGACATCGCATTTGGTGTTGATCTGATGAGGAATTACATGAATTGTTTCTGGTATAGCTGCTACCACCTCCTGATAGAAAATGAACAACAACTTAAATCTCGATTCTGAGAGAAAAAATAAAGAACCATACTCATGAAAAGGAAATCAATGATCGAGGATTGACACATTCTGAGAAACACAAGATTTGCAGGCACCTTCATGAGATGAAGAACTCTGGTAATTTTCAGAAATAACAGAGGAACTGCAAACAGGGGATGATCCAGAAGACCCAGTTTTCCTGTTCTTCCTTCCATTCGAAAATCCGTCTGAACTTCGTCGATCCGTCTCAAACGGCCTGAAGCTCTGGCAAGCTACCGGCTGATGGACGGTTCTCTCACCGCCGTGGCCAGCCGCCTCCCAGTACGGCACCACACAGGGGAAAACGAAGCCATTCATAAACGGCACGTACTGCAACGACGAATAAGGATATGGCATTAGCTCTGCAGATCCATTTCGACATTCATATCCAACGCCTTGAAGCTTCTTCTCCCTCTTCAATGGCGGATTCCGTTCGTCTTCTTCGTCTCGTTTCCTCTTGGTCTCTCGTCGCCGGATCTGGCCTCTATTCTTGGCATCAGTAACTCCGCTATCCTCCTCGTCTCCATCGCTAGTCCACAACGTGAAGGAAGAACCAGACGCCGTCGATTTCTCCGGTAAGGTTCTAAAAACTCCGCCGATTGACAACGCTAAATCGACGTCTACGTCGTTGTTGTTTTCATCTGGTAAGACCACAGATTTCATCTTCTCACAAAAACGAAGAACAAAGATGAAGAGAATCGCAGCAGAAAAAGAAGATTACAAATGTGGGGATGCGGGATTGTTGGGTTATATGGATTGGACGGAGTGATTCTCGGGGGATGGAGAAGGGGTGACGTGTCGGCCATGGAGGAGGTAAGGACGGCGGTGGGGTTGGAGGAAGGAAGAAGAAAGCAAGACGAAAGGATATAATCAGAGAGATATTTTTAGAGCATCGCCATTAAAATTTGGTAATCTTAATTTTAATTATTTTTTTATTATAATATATTTTATTATTTTAGCTTATCTTAAAATTGAGATTATTTGATCCTAATCTAAGGTTTTCGAATAATAAATTATTAGAGAGAGGCATGGGGACGCCACGTGTCGGGTTTTAGCGGGAAAAGGCATGACTGTCTGACAGGCTGGCGAAGAAGAACACGTGGCGGGGTGATTTTCCCGTCCCCACGAATCTCTCTTTCCACGTTAAAATCTCATGCCGCGAGATCAGCGCAACCATGTAGACTATGAACACATGTATATCGTTTTTACGGGTCCCACTATGATGACACGTGATGATATGACAGCTAAGGACGCCAACTTTTTTGACTCGGATTATTGGTTATGACACGCTGTCAGACACGTGGCTGGTTTTGTTTGGATAAGACGGGGTAAGAGTACGGTGACGAATAATTCTGTGGGGTCCTTTGTTTGACACGGCGCGTGGATTATCTTGTTTTGAGGTGCCACGTGACTTCATAAGAGACGTGGAGAAAGGATGTGGATTCGACGGTGCTGGAGTGGCCACGTCGATTTCCGTTTTTTCTTTTCTTCTTCGTATTTCGAGTTATTTCTTTTCCTAAATTAAAGAGGACCAAAAAAAAAATAATATAGAGTTTTGTAAATTAAATAATTGTATTTAGTGTTG

mRNA sequence

TAGACGTTGAAGAAATCAAACGAGAGTACAAAACGAGGGAGTCCAATCCAACGTCCTGTTGAAAACCTAATTTCTTTGATCAACTCAACTCTGCCCTACTCCCCCGTCGAACTCCTCGCCGTCGCTTCGCCGGATTCGAGCCAAGGCGACGGCGCGGGAGGTTTGATTATCAGAATTCAGAGAAAAGAAGCTGAGAGGTACGGACTTAGATTTACGATTCACAAAGAAGACGGAGAAATTGAGGAGAATTTTGCGAACGGGTGATAGAAAGAGGTTGCTACGAAGTGGAATTAAAGTGGAGAGTTAGGGCGACTCGAAGTCCTCGCCAAATTAAGGCTGTATAATCATTGAAGTTTTCGCGGAATCTATCCATTACGCACTTTTTCTGGAGTAATTTAGTGGAAGATTTCTATGGAAGAGGCGAAAGAAATTTTGAAGGATAACAGAATTGAAGATATCAGTTGGCTTTGCTCGTTATCTGAATCAGAGCTTGACTTTCTGATTAGCATTAAAATGCTAGTTCTCCAGCGTGCAAAAGTAATTGGCCATGAAGATCTAGCTGAGAAATTTGATCTGAAGACACTACGTGCTATAGGGTTTATTTTGATGGAGCATCTTAAAGGACAACTTAGTGTGTCAGGTGTCCCAGATCAGTCTCAATTTTCTGCCTTAAATGGGTCCAACTTATTAGACAGCAGTCTTGAGAAAATTTTGTCAATTGATGATATAATGGCAAGCATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGTCGCGGCCGAAGGCTGATTCTAGACCAAAGAAGAAGTTGTGAATTAGAAAATAGCAGAAGTAGACACAGATTCATGGAGGTTGTCTTGGCCTAACTGATGAACAATGCAGCTCCCACATTGCGAGACTTGGCGGTGACTATAACACGGAAGGAAATGAGTTCGACAATCTCATATGAGGTACTTCGACAACTTAGATAATGATTAAAAAATAGTTTCAACCCCAATAGAACATTAGAATGATATTAGCATTGGAACTAGTCTATATGTAATAGTTGAAACTCTATATCTGAATGCCTTTGAAAATGTTCTCTAAAAATATGCACAAAGCCAAAAGATTTGGGGCCTGAAATAGCCCTCAAATATGACGATAAAGTACTTCGCTACAGATCCTCTCCTGCCCCAAGGTTTCATTATTAGAAAAAAAACACGTTAAGCTGTTATGATCTAAGATCAAATGCTTTCATCTGATTGCAGATGGTATTCCATTAGTAGGAAGAACAGTAATGTGTCTCAAAGGGTGAGAAATTTCTTCGCCCCCGGCGTGCTTGACGAACTCGGCTGGTGAAAAGGATTCTCCATGGCAGACGCACAAAATACTGACCTCCAAGTTGGAGTATCTGTACAAGAACCCAGTGATGGTTTTGCCGTTGGGACCAACTCCGGTCGTCGAAACGCAGGGCATTTGCTGAAGGCTTGGCACATTTCGGCTAAGAATTTGAGGCTTTGGAAGTTCCTCATTCTCCATCTTCATGTTCTTTATTGACATGGAAGGAGACCTCTGGGAATTGAAAACAGATTTGTTGCTCGATCCAGTGATTGGCTCTTTCTTGTGGACATGGGATTCACCAGATTTCTCTTCACGTTGTGTCCTGTTCTCACTGCAAGGCTTTGGTTTATCATGATTCATAGAATCATTCGTATTTGGTTTCGGGTTCGGACATCGCATTTGGTGTTGATCTGATGAGGAATTACATGAATTGTTTCTGGTATAGCTGCTACCACCTCCTGATAGAAAATGAACAACAACTTAAATCTCGATTCTGAGAGAAAAAATAAAGAACCATACTCATGAAAAGGAAATCAATGATCGAGGATTGACACATTCTGAGAAACACAAGATTTGCAGGCACCTTCATGAGATGAAGAACTCTGGTAATTTTCAGAAATAACAGAGGAACTGCAAACAGGGGATGATCCAGAAGACCCAGTTTTCCTGTTCTTCCTTCCATTCGAAAATCCGTCTGAACTTCGTCGATCCGTCTCAAACGGCCTGAAGCTCTGGCAAGCTACCGGCTGATGGACGGTTCTCTCACCGCCGTGGCCAGCCGCCTCCCAGTACGGCACCACACAGGGGAAAACGAAGCCATTCATAAACGGCACGTACTGCAACGACGAATAAGGATATGGCATTAGCTCTGCAGATCCATTTCGACATTCATATCCAACGCCTTGAAGCTTCTTCTCCCTCTTCAATGGCGGATTCCGTTCGTCTTCTTCGTCTCGTTTCCTCTTGGTCTCTCGTCGCCGGATCTGGCCTCTATTCTTGGCATCAGTAACTCCGCTATCCTCCTCGTCTCCATCGCTAGTCCACAACGTGAAGGAAGAACCAGACGCCGTCGATTTCTCCGGTAAGGTTCTAAAAACTCCGCCGATTGACAACGCTAAATCGACGTCTACGTCGTTGTTGTTTTCATCTGGTAAGACCACAGATTTCATCTTCTCACAAAAACGAAGAACAAAGATGAAGAGAATCGCAGCAGAAAAAGAAGATTACAAATGTGGGGATGCGGGATTGTTGGGTTATATGGATTGGACGGAGTGATTCTCGGGGGATGGAGAAGGGGTGACGTGTCGGCCATGGAGGAGGTAAGGACGGCGGTGGGGTTGGAGGAAGGAAGAAGAAAGCAAGACGAAAGGATATAATCAGAGAGATATTTTTAGAGCATCGCCATTAAAATTTGAGAGAGGCATGGGGACGCCACGTGTCGGGTTTTAGCGGGAAAAGGCATGACTGTCTGACAGGCTGGCGAAGAAGAACACGTGGCGGGGTGATTTTCCCGTCCCCACGAATCTCTCTTTCCACGTTAAAATCTCATGCCGCGAGATCAGCGCAACCATGTAGACTATGAACACATGTATATCGTTTTTACGGGTCCCACTATGATGACACGTGATGATATGACAGCTAAGGACGCCAACTTTTTTGACTCGGATTATTGGTTATGACACGCTGTCAGACACGTGGCTGGTTTTGTTTGGATAAGACGGGGTAAGAGTACGGTGACGAATAATTCTGTGGGGTCCTTTGTTTGACACGGCGCGTGGATTATCTTGTTTTGAGGTGCCACGTGACTTCATAAGAGACGTGGAGAAAGGATGTGGATTCGACGGTGCTGGAGTGGCCACGTCGATTTCCGTTTTTTCTTTTCTTCTTCGTATTTCGAGTTATTTCTTTTCCTAAATTAAAGAGGACCAAAAAAAAAATAATATAGAGTTTTGTAAATTAAATAATTGTATTTAGTGTTG

Coding sequence (CDS)

ATGGAAGAGGCGAAAGAAATTTTGAAGGATAACAGAATTGAAGATATCAGTTGGCTTTGCTCGTTATCTGAATCAGAGCTTGACTTTCTGATTAGCATTAAAATGCTAGTTCTCCAGCGTGCAAAAGTAATTGGCCATGAAGATCTAGCTGAGAAATTTGATCTGAAGACACTACGTGCTATAGGGTTTATTTTGATGGAGCATCTTAAAGGACAACTTAGTGTGTCAGGTGTCCCAGATCAGTCTCAATTTTCTGCCTTAAATGGGTCCAACTTATTAGACAGCAGTCTTGAGAAAATTTTGTCAATTGATGATATAATGGCAAGCATCTGTTCTGAAAGAAGGAAGAAACCTGGAAAAAGGTCGCGGCCGAAGGCTGATTCTAGACCAAAGAAGAAGTTGTGA

Protein sequence

MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRAIGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGKRSRPKADSRPKKKL
Homology
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BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match: A0A0A0KW48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.5e-45
Identity = 104/132 (78.79%), Postives = 113/132 (85.61%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK +GHE+LAEKFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ SALN  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQ-SALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RSRPKADSRPKK 133
           R + K DSR KK
Sbjct: 300 RPQEKVDSRYKK 310

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match: A0A0A0LBP9_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.7e-45
Identity = 104/132 (78.79%), Postives = 112/132 (84.85%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK IGHE+LAEKFDL+TLRA
Sbjct: 59  MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 118

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ S  N  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 119 IGFVLMEHLKGKLRTSDVSDLSQ-STFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 178

Query: 121 RSRPKADSRPKK 133
           RSR K D   KK
Sbjct: 179 RSREKVDLSYKK 189

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match: D7TVM0_VITVI (Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 70/130 (53.85%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 7   ILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRAIGFILM 66
           +L  NR+ED++WLCSLS+SELD LIS+KM+VL+RAKVIGHEDLAEKFDLK LRA+GFILM
Sbjct: 6   VLGSNRLEDVNWLCSLSDSELDMLISLKMMVLRRAKVIGHEDLAEKFDLKMLRALGFILM 65

Query: 67  EHLKGQL-SVSGVPDQSQFSA-LNGSNLLDSSLEKILSIDDIMASICSERRKKPGKR-SR 126
           E+L+GQ+  +S +P  +     LN  NLL  SL+  +S +++ A IC+  ++   +R S+
Sbjct: 66  EYLRGQVKDLSAIPGLAGLDKFLNECNLLKCSLKDTISTEELKACICTNSKRGTAERSSK 125

Query: 127 PKADSRPKKK 134
             A +R K+K
Sbjct: 126 ELAPNRKKQK 135

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match: A0A067GCR1_CITSI (Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g040610mg PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-25
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           ++E  EIL  NR+ED+SWLCSLSESELD LIS+K+LVLQRAKVIGHE+LA KFDLK LRA
Sbjct: 3   LKEMNEILSKNRVEDVSWLCSLSESELDMLISLKLLVLQRAKVIGHEELANKFDLKALRA 62

Query: 61  IGFILMEHLKGQLS----VSGVPDQSQFSALNGSNLLDSSLEKILSIDDI 107
           +GFILMEHLK +        G  + ++F A  G NLL    E IL+++++
Sbjct: 63  LGFILMEHLKEKFKDLSLFPGSAEPAKFIA--GCNLLKCDNEDILTVEEL 110

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match: K4AST4_SOLLC (Gamma-tubulin complex component OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 64/122 (52.46%), Postives = 92/122 (75.41%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           M+E   IL +NRIED+ WLCSL+ESELD LI +K+L+ QRAK IGH+ LA KFDLKTLRA
Sbjct: 1   MKEQMAILGNNRIEDVRWLCSLTESELDLLIGLKVLIQQRAKKIGHKSLANKFDLKTLRA 60

Query: 61  IGFILMEHLKGQL-SVSGVPDQSQFSA-LNGSNLLDSSLEKI---LSIDDIMASICSERR 118
           + F+LME+LKG+L  +SG PD ++FS+ L+  NLL+   +K    + ++ + + IC+++R
Sbjct: 61  LSFVLMENLKGKLRDLSGTPDTAEFSSTLDACNLLNYVRDKTFANMGVEQLSSYICNDKR 120

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TAIR10
Match: AT1G80245.1 (AT1G80245.1 Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 59/126 (46.83%), Postives = 85/126 (67.46%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEE  +ILK+NR +D++W CSLSESELD LIS+K L +QRAK+ GH++LA+KFDLK LR+
Sbjct: 1   MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKISGHQELADKFDLKLLRS 60

Query: 61  IGFILMEHLKG--QLSVSGVPD-QSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKK 120
           +G +LMEH +   Q   S  P    Q   L+  NLL + ++  + I++I+  IC  + KK
Sbjct: 61  LGLVLMEHARKRVQNDTSLAPSVVHQLRLLDNCNLLKTHVDDAVDIEEILTQICDNKSKK 120

Query: 121 PGKRSR 124
             ++ R
Sbjct: 121 KARKRR 126

[Close]
BLAST of Cp4.1LG05g00640.1 vs. TAIR10
Match: AT4G00695.3 (AT4G00695.3 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-23
Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDL-AEKFDLKTLR 60
           MEE  +ILK+NR +D++W CSLSESELD LIS+K LV++RAKV G EDL A+KFDLK LR
Sbjct: 1   MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKVSGLEDLVADKFDLKMLR 60

Query: 61  AIGFILMEHLKGQL--SVSGVPDQSQ-FSALNGSNLLDSSLEKILSIDDIMASICSERRK 120
           ++G +LME+++ ++    S  P   Q  S L+  NLL + ++  + I++I+  IC++   
Sbjct: 61  SLGLVLMEYVRKRVEDDTSLAPSVVQELSLLDSCNLLKTHVDDTVDIEEILTDICNKNWA 120

Query: 121 KPGKR 122
             G R
Sbjct: 121 TKGTR 125

[Close]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match: gi|659100239|ref|XP_008450997.1| (PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-46
Identity = 100/123 (81.30%), Postives = 110/123 (89.43%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+NR+EDISWLCSLSESELD LISIKMLVLQRAK IGHE+LAEKFDLKTLRA
Sbjct: 1   MEEANEILKNNRVEDISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLKTLRA 60

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ + LN  NLLDS++EKILSID+IMASICS+RRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQSATLNACNLLDSNVEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RSR 124
           R R
Sbjct: 121 RPR 123

[Close]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match: gi|778692248|ref|XP_011653427.1| (PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 6.5e-45
Identity = 104/132 (78.79%), Postives = 113/132 (85.61%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK +GHE+LAEKFDLK  RA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 60

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ SALN  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 61  IGFVLMEHLKGELRTSDVSDLSQ-SALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RSRPKADSRPKK 133
           R + K DSR KK
Sbjct: 121 RPQEKVDSRYKK 131

[Close]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match: gi|700198692|gb|KGN53850.1| (hypothetical protein Csa_4G166940 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 6.5e-45
Identity = 104/132 (78.79%), Postives = 113/132 (85.61%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK +GHE+LAEKFDLK  RA
Sbjct: 180 MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAVGHENLAEKFDLKMQRA 239

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ SALN  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 240 IGFVLMEHLKGELRTSDVSDLSQ-SALNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 299

Query: 121 RSRPKADSRPKK 133
           R + K DSR KK
Sbjct: 300 RPQEKVDSRYKK 310

[Close]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match: gi|778682197|ref|XP_011651668.1| (PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 104/132 (78.79%), Postives = 112/132 (84.85%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK IGHE+LAEKFDL+TLRA
Sbjct: 1   MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 60

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ S  N  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 61  IGFVLMEHLKGKLRTSDVSDLSQ-STFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 120

Query: 121 RSRPKADSRPKK 133
           RSR K D   KK
Sbjct: 121 RSREKVDLSYKK 131

[Close]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match: gi|700203241|gb|KGN58374.1| (hypothetical protein Csa_3G633280 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 104/132 (78.79%), Postives = 112/132 (84.85%), Query Frame = 1 

Query: 1   MEEAKEILKDNRIEDISWLCSLSESELDFLISIKMLVLQRAKVIGHEDLAEKFDLKTLRA 60
           MEEA EILK+ RIE ISWLCSLSESELD LISIKMLVLQRAK IGHE+LAEKFDL+TLRA
Sbjct: 59  MEEANEILKNKRIEGISWLCSLSESELDLLISIKMLVLQRAKAIGHENLAEKFDLRTLRA 118

Query: 61  IGFILMEHLKGQLSVSGVPDQSQFSALNGSNLLDSSLEKILSIDDIMASICSERRKKPGK 120
           IGF+LMEHLKG+L  S V D SQ S  N  NLLDS+LEKILSID+IMASICS+RRKKPGK
Sbjct: 119 IGFVLMEHLKGKLRTSDVSDLSQ-STFNACNLLDSNLEKILSIDEIMASICSDRRKKPGK 178

Query: 121 RSRPKADSRPKK 133
           RSR K D   KK
Sbjct: 179 RSREKVDLSYKK 189

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g00640.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g00640.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW48_CUCSA4.5e-4578.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G166940 PE=4 SV=1[more]
A0A0A0LBP9_CUCSA7.7e-4578.79Gamma-tubulin complex component OS=Cucumis sativus GN=Csa_3G633280 PE=3 SV=1[more]
D7TVM0_VITVI1.4e-2553.85Gamma-tubulin complex component OS=Vitis vinifera GN=VIT_02s0025g02130 PE=3 SV=1[more]
A0A067GCR1_CITSI8.8e-2559.09Gamma-tubulin complex component OS=Citrus sinensis GN=CISIN_1g040610mg PE=3 SV=1[more]
K4AST4_SOLLC1.2e-2452.46Gamma-tubulin complex component OS=Solanum lycopersicum PE=3 SV=1[more]
BLAST of Cp4.1LG05g00640.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80245.11.2e-2546.83 Spc97 / Spc98 family of spindle pole body (SBP) component[more]
AT4G00695.39.7e-2347.20 FUNCTIONS IN: molecular_function unknown[more]
BLAST of Cp4.1LG05g00640.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659100239|ref|XP_008450997.1|3.4e-4681.30PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo][more]
gi|778692248|ref|XP_011653427.1|6.5e-4578.79PREDICTED: uncharacterized protein LOC105435221 [Cucumis sativus][more]
gi|700198692|gb|KGN53850.1|6.5e-4578.79hypothetical protein Csa_4G166940 [Cucumis sativus][more]
gi|778682197|ref|XP_011651668.1|1.1e-4478.79PREDICTED: uncharacterized protein LOC101210446 isoform X2 [Cucumis sativus][more]
gi|700203241|gb|KGN58374.1|1.1e-4478.79hypothetical protein Csa_3G633280 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0043015gamma-tubulin binding
Vocabulary: Biological Process
TermDefinition
GO:0007020microtubule nucleation
GO:0000226microtubule cytoskeleton organization
Vocabulary: Cellular Component
TermDefinition
GO:0005815microtubule organizing center
GO:0000922spindle pole
Vocabulary: INTERPRO
TermDefinition
IPR007259GCP
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0007020 microtubule nucleation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
cellular_component GO:0005840 ribosome
cellular_component GO:0045298 tubulin complex
molecular_function GO:0043015 gamma-tubulin binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g00640Cp4.1LG05g00640gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g00640.1Cp4.1LG05g00640.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g00640.1:five_prime_utr:002Cp4.1LG05g00640.1:five_prime_utr:002five_prime_UTR
Cp4.1LG05g00640.1:five_prime_utr:001Cp4.1LG05g00640.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g00640.1:cds:004Cp4.1LG05g00640.1:cds:004CDS
Cp4.1LG05g00640.1:cds:003Cp4.1LG05g00640.1:cds:003CDS
Cp4.1LG05g00640.1:cds:002Cp4.1LG05g00640.1:cds:002CDS
Cp4.1LG05g00640.1:cds:001Cp4.1LG05g00640.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g00640.1:three_prime_utr:003Cp4.1LG05g00640.1:three_prime_utr:003three_prime_UTR
Cp4.1LG05g00640.1:three_prime_utr:002Cp4.1LG05g00640.1:three_prime_utr:002three_prime_UTR
Cp4.1LG05g00640.1:three_prime_utr:001Cp4.1LG05g00640.1:three_prime_utr:001three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 26..116
score: 1.3
NoneNo IPR availablePANTHERPTHR19302:SF39SUBFAMILY NOT NAMEDcoord: 26..116
score: 1.3