Cp4.1LG04g08660.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g08660.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG04 : 2602325 .. 2607581 (+)
Sequence length	687

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTTTTAAGATAAAGGTTATGTTTTATGGAATTTTAATGAAGTCTTCCGCATTCAATGTTTATGGTATGTATACAGTAGTGACCTTAAATTAAGTAGAAAATTCCAGGTCGTTACAAAACTGATGACATGGGCTCACATAGGTTGACTTGGATTTCAATGAGCTTTCATTAAGGATAACGACAGAACATCAGCCTAAGCTAACCAGGTAAGTGACCTTACTATCGGCATTGTTATATTTGATGTTGACACGTGCCCTGTGGTTCTGCACGTGTCATATATATCGATATATGTGAATAGTCTATGGATCGATATGCTTTCTATGTGTTATGTTATGTTATAATATGTGAATTGTATGATAATAATTACGGTACGATGTGTTCAAGGATATATTTGAGATAGGATACAAGAAAGATGCAAAAAACGAAATGTAACGATAGGAGTAAAATACGTTCATGAAACGTTAAGGTTAGGTTACATACCGGAGTGATATGGATAAGAGAGATTGATGGAAGAAAACGGTTAGGCTACGGGTAGAAAGGGATAGGTTTGTGATAGATTGATAGAACGATAGCGTTAGGTTAAGTTCTTGTGATGAGATGACTAAGGTACGTTCACGTAATGATATGTCTGTGATAGGTATAAGAACGTTAAGGCTATGATAAGTTAGAGAACAATATGACTATGAAGTGTTTACGTTATGACTCGTTTATGATATGATACATTGTGATGCAATATGTCATGGTATGATGTGTATATGATGAAATGTTATGTTAAAAGCATAGAACGTTATGTTAGGTCTCTTAAATTGTGTGTATACAACATGATATGAATGACATGAAATTACGATAAATGACATGAAGTATAACCCCGTTAGAATTATGTATGATTTGAGAACTGAAGAATGAGAAACGATATGACATGAATGATGAACGATATCTGAAACGATATGAAAAATGATATGATATGTACATAATGCTAGCGGGGTTGTATTAAAGGATAATGAAAATGGAAAAGTTTTGGGACCTCATGCATTATGTGTGCTCATGCATTTGGGGGGATACCCCTATCCCATCACGAGGGTACGGACGCGTACATCTAATGACAGGACAACGATCGTTATGCTTTGCATAGCGCTGCCGTGACGGTTACTAGTTCTAGCGGGTGTCCGGCCTAAGGGGCTCCCAGAGTATGCCCACCGGATAAGGAAAGTGGCCTAGCGGTGTGCAAACTAGCTGGTGAGCCCATACTCGCACATATGGGCTGTGTATAGAGTATATGGTACACGTCCAAAATTTACCCGTTAGGACAGCACCGTAGGAAAAACGGAATGAAAGATAGGTCACATCATCTCATTGCATGTGATTGTTGCATTCAACCTCAATAGTGGGGTCACTTACTGAGTATTTCTTTAAATACTCAAGCCATGTGCTGGTACATTTTTCAGGTTAAGGCAAGACATTTCTGTACGGCTGACGACGGCATCACAACTTGAGACTATGGCACATGCATAGGATAGTGGTATTTATTTTCTTAGACTTAGGCTAGAATATAATGTTTTTAGCTTAAACTCTTATTCATTTTATTTAGTCTTTTGTTGTGTCGTTTTAAAGATGATTTCGAAACACGTAAGTTCATGGCTGTGTTTTATGATAAAGATTATGTTTTATGGAATTTAAATGAAGTCTTCCGCATTCAATGTGTATGGCACGTATACAGTAGCGACCTTAAATTAAGCAGAAAATTTCGGGTCGTTACAAAAGAGAAGAGACAATTCATGCTATCAAAACTAGAGCTCAAAACTAGAGCTTAGTTATAGTCATCTCCATCCTAGTTTGAAGCCACGTTTTTTTTTATATTGTGCTTTATTTTCTAAAGATTATAATATTCAAAAGGATGCACTGATTAAGCAATGGGTGGCACAAGGTTTCGTTTAATCATTTGACATAATTGAGCCATATGACATTGGTGAAGATCATTGTAACGACCTGGGAAAGAAAGAAAAAAAAATATATAATAATAAATAAATAAATAAGGGAAAACGAGAAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATGTACGGTTGACGGTGGCATCGTGATCAGAGACTGTGACGCGTGCATAGGATAGTTGCATATTTAATTCCTAGTCTTGGTTAGGATCGGGCGTTTGCATTTCATTCATTTGTAATCGTTTTATTTTATCTTTTTGAACTCCAGCACGATGTTTGAAACACGTAAGTCCGGCAGTGTTTTCCAATGTTTTAATGTATTCTGAAGTTTTAAATTTTTCCGCTAATAAATACGAGCATGCTTAGATTTTTATTCTGCATTAGAGATGAGCATGAGACGTTAGTGACGACTTTAGATATGTGGAAATTTAGGGTCGTTACAATTATTTCATGGAATTATTATCAAAATCTTTCTTTTAAGACGTCACAAGAAATGAAGAGGGTGTAATAATAGAGTATAAGATGCATGACTTGATACATGATTTGCTTTTTTAATAGTGAAATAGGAATACATTTCTATGGATGTGAACGATAGCACCAACATTGACAGCACCCGACACATCTATATTTATCGTCCACTTGGTATAAAATTAGAATCCCTAAAATTATTGTTTGAGTCAAACAAGAAAAAAATAAATAATAAATAAGAACATTAATTATTGATGCTCCATGAAAGGATTGCCAAATAGTCCTTTAACTCAATCTCTTCCATGTTTTGCCACTAAGGACATTGCGTTTGAATTTCGGCTCGGCTGTTACTTTAAAAGTATTGCCAATATCTATTGGCAAAGTTGAAATGTAAGATATATCTGAAGATAGGTCTACATGAACTTCAATTTCTTCTTCTGAATTCTATAACTAAATTGTATAATTTGGAAACATTTGTCTTCAATGAGTGTATACGTTTACCAGAGTTGTGGAGAGATCTAAAAATTGGATGAAGCTTAGGTATTTAAGCTTTGCTAGAAATAGTGAAATAAAATATCTTCTGCAGCCTATTGCTGCATTGCACAATTTAAAAACACTTATCTTTCAAGGTTGTTTTCTATTAAAAGAATTGCCAAATATATTAAAAAATGTGTCAACCTTAAACATCTTGATTTATGTGATTGCAATGTTTTGACTCATATACCTAAAGGACTAGGTGAGCTTACTAGTCTTCAAACAACGAATTTATTTATACTAAAAAAAGATATTGGACGTTTGCACAATAGATGATTTAGTAAATAGTTCTTTTAACTTTCAATTGAGGTTGGGTGTTCAAGAATTAAAGTTTGTTCGGAACTATTCCGAAGATGAGCATATGAATATTATCTTGGACAAGGAGTGCAAAGGGGTTTTAAAATGCTTACAACCACATTCAAAGGTTCAAAAAATAGATATATACCAATATCGAAAAGTCAGACTATGTGATTGGCTATCCTCTATACCCTTCTTAACTTGGTCAACATAAAGCTTTCAAATTGCTTCAAATTGCAGGTTCTCCCACAATCTGATCAATTTACTTTTCTCAAGCATTTGAGTCTTAAATCAATACCGAATATTGATTACATTGATTACAATAAATATCCTTCTCCGACAATGTTTTTTCCATCCCTTAAGAAATTAAATTTAAAAGGAGGGTGGAATGGTGAAACTTCATCATAG

mRNA sequence

ATGGCTATGATAACGACAGAACATCAGCCTAAGCTAACCAGTCTTTTGTTGTGTCGTTTTAAAGATGATTTCGAAACACATTATAATATTCAAAAGGATGCACTGATTAAGCAATGGGTGGCACAAGCCTATTGCTGCATTGCACAATTTAAAAACACTTATCTTTCAAGGTTGTTTTCTATTAAAAGAATTGCCAAATATATTAAAAAATGTGTCAACCTTAAACATCTTGATTTATGTGATTGCAATGTTTTGACTCATATACCTAAAGGACTAGGTGAGCTTACTAGTCTTCAAACAACGAATTTATTTATACTAAAAAAAGATATTGGACATGATTTAGTAAATAGTTCTTTTAACTTTCAATTGAGGTTGGGTGTTCAAGAATTAAAGTTTGTTCGGAACTATTCCGAAGATGAGCATATGAATATTATCTTGGACAAGGAGTGCAAAGGGGTTTTAAAATGCTTACAACCACATTCAAAGGTTCAAAAAATAGATATATACCAATATCGAAAAGTTCTCCCACAATCTGATCAATTTACTTTTCTCAAGCATTTGAGTCTTAAATCAATACCGAATATTGATTACATTGATTACAATAAATATCCTTCTCCGACAATGTTTTTTCCATCCCTTAAGAAATTAAATTTAAAAGGAGGGTGGAATGGTGAAACTTCATCATAG

Coding sequence (CDS)

ATGGCTATGATAACGACAGAACATCAGCCTAAGCTAACCAGTCTTTTGTTGTGTCGTTTTAAAGATGATTTCGAAACACATTATAATATTCAAAAGGATGCACTGATTAAGCAATGGGTGGCACAAGCCTATTGCTGCATTGCACAATTTAAAAACACTTATCTTTCAAGGTTGTTTTCTATTAAAAGAATTGCCAAATATATTAAAAAATGTGTCAACCTTAAACATCTTGATTTATGTGATTGCAATGTTTTGACTCATATACCTAAAGGACTAGGTGAGCTTACTAGTCTTCAAACAACGAATTTATTTATACTAAAAAAAGATATTGGACATGATTTAGTAAATAGTTCTTTTAACTTTCAATTGAGGTTGGGTGTTCAAGAATTAAAGTTTGTTCGGAACTATTCCGAAGATGAGCATATGAATATTATCTTGGACAAGGAGTGCAAAGGGGTTTTAAAATGCTTACAACCACATTCAAAGGTTCAAAAAATAGATATATACCAATATCGAAAAGTTCTCCCACAATCTGATCAATTTACTTTTCTCAAGCATTTGAGTCTTAAATCAATACCGAATATTGATTACATTGATTACAATAAATATCCTTCTCCGACAATGTTTTTTCCATCCCTTAAGAAATTAAATTTAAAAGGAGGGTGGAATGGTGAAACTTCATCATAG

Protein sequence

MAMITTEHQPKLTSLLLCRFKDDFETHYNIQKDALIKQWVAQAYCCIAQFKNTYLSRLFSIKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDLVNSSFNFQLRLGVQELKFVRNYSEDEHMNIILDKECKGVLKCLQPHSKVQKIDIYQYRKVLPQSDQFTFLKHLSLKSIPNIDYIDYNKYPSPTMFFPSLKKLNLKGGWNGETSS

Homology

[Close]

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL
Match: A0A0A0K5Z6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425920 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 84/225 (37.33%), Postives = 111/225 (49.33%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL------ 120
           ++ +   I   +NLKHLD+  C  LTH+PKGLG LTSLQT NLF+L KD G DL      
Sbjct: 239 LRELPTDINNLINLKHLDVHGCYRLTHMPKGLGGLTSLQTMNLFVLGKDKGCDLSELNEL 298

Query: 121 -------------------VNSSFNFQLRLGVQELKFVRNYS-EDEHMNIILDKECKGVL 180
                              + ++   + + G+Q+LK   N    D   +   + + + VL
Sbjct: 299 ARLRGSLLIKGLELCTTTDLKNAKYMEEKFGIQKLKLRWNRDLYDAETDYASENDDERVL 358

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 227
            CL+PHS V K+ I  YR V                           LPQ DQF FLKHL
Sbjct: 359 DCLKPHSNVHKMQIRGYRGVKLCNWLSFDYLGGLVNIELQSCEKLQHLPQFDQFPFLKHL 418

[Close]

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL
Match: A0A0A0K9P7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425940 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-23
Identity = 83/227 (36.56%), Postives = 119/227 (52.42%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL--VNSS 120
           ++++ K I   +NL+HLD+ DC+ LTH+PKGLG +TSLQT ++F+L K+ G DL  +N  
Sbjct: 453 LRKLPKDINNLINLRHLDIYDCSSLTHMPKGLGGMTSLQTMSMFVLGKNKGGDLSALNGL 512

Query: 121 FNFQLRLGVQELKF-----VRNYSE----------DEHMNIILDKE---------CKGVL 180
            + +  L ++ L+F     ++N S           + H +I +D E          +GVL
Sbjct: 513 KSLRGLLCIKGLQFCTTADLKNVSYLKEMYGIQKLELHWDIKMDHEDALDDGDNDDEGVL 572

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 228
           + L+PHS ++K+ I  YR +                           LPQ DQF +LKHL
Sbjct: 573 EGLKPHSNIRKMIIKGYRGMKLCDWFSSNFLGGLVSIELSHCEKLEHLPQFDQFLYLKHL 632

[Close]

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL
Match: A0A0A0KIT2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375730 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 77/224 (34.38%), Postives = 117/224 (52.23%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDC-NVLTHIPKGLGELTSLQTTNLFILKKDIGHDL--VNS 120
           ++ ++  IK  +NL+HLD+ D  +V +++PKG+G +T+LQT NLFIL ++ G +L  +N 
Sbjct: 461 LRELSSDIKNLINLRHLDIKDFKHVWSYMPKGMGSMTTLQTMNLFILGENKGGELSELNG 520

Query: 121 SFNFQLRLGVQELKFVR-------NYSEDE--------HMNII-----LDKECKGVLKCL 180
             N +  L +Q+L+F +        Y E++        H         +D E + VL+ L
Sbjct: 521 LVNLRGSLSIQQLQFCKPIGLENVKYLEEKSRIQKLELHWKTYQRESKIDDEDERVLESL 580

Query: 181 QPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHLSLK 227
           +PHS +QKI I  YR +                           LP+ D+F FLKHL L+
Sbjct: 581 KPHSNLQKIRIEGYRGLKLCNWFSFDSIVNLVFIKLFNCEKLQQLPRFDRFPFLKHLHLE 640

[Close]

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL
Match: A0A0D2SQD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G364300 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.1e-14
Identity = 69/228 (30.26%), Postives = 106/228 (46.49%), Query Frame = 1


Query: 42  QAYCCIAQFKNTYLSRLFSIKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTT 101
           ++ C I    +  L     +K + K I+K VNL HL    C+ LTH+P+G+G+LTSL+T 
Sbjct: 606 KSICKIQNLLSLKLDECPKLKELPKKIEKLVNLTHLACYFCDRLTHMPRGIGKLTSLETL 665

Query: 102 NLFILKKDIGHDLVNSS-----FNFQLRLGVQELKFVR---------NYSEDEHMNIILD 161
           ++F++ KD  H   + S      N + RL ++ L  V+         N  E +H+   LD
Sbjct: 666 SMFVVDKDGSHGGADLSELRLLNNLRGRLTIRNLGSVKNAKEKFKAANLKEKQHLR-SLD 725

Query: 162 KECKG-------VLKCLQPHSKVQKIDIYQYR-------------------------KVL 220
            E  G        L+ LQPH  ++++ I  +R                         K L
Sbjct: 726 LEWGGRNHDDEKSLEDLQPHPNLKELWIRGWRADAKFPSWLHLLTSLVKIKINYGNFKRL 785

[Close]

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL
Match: B9SL89_RICCO (Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.5e-13
Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 1


Query: 55  LSRLFSIKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL 114
           L+ L  +K++ K IKK V+L HLDL  C+ LTH+P GLG+LTSL   + F++ KD G   
Sbjct: 621 LAGLRRLKQLPKDIKKLVDLMHLDLWKCDGLTHMPPGLGQLTSLSYLSRFLVAKDDGVSK 680

Query: 115 VNSSF-------NFQLRLGVQELKFVR---------NYSEDEHMNIIL---------DKE 174
             S         N +  L +  L+ V+         N  E +H+  +          D  
Sbjct: 681 HVSGLGELCDLNNLRGLLEIMNLQNVKNPASEFRTANLKEKQHLQTLKLTWKSGDEDDNT 740

Query: 175 CKG-----VLKCLQPHSKVQKIDIYQYRKV-------------------------LPQSD 229
             G      L+ LQPH  +Q +D+  + ++                         LP  D
Sbjct: 741 ASGSNDDVSLEELQPHENLQWLDVRGWGRLRFPSWVASLTSLVELRIDNCINCQNLPPLD 800

[Close]

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr
Match: gi|778728520|ref|XP_011659433.1| (PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 84/225 (37.33%), Postives = 111/225 (49.33%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL------ 120
           ++ +   I   +NLKHLD+  C  LTH+PKGLG LTSLQT NLF+L KD G DL      
Sbjct: 651 LRELPTDINNLINLKHLDVHGCYRLTHMPKGLGGLTSLQTMNLFVLGKDKGCDLSELNEL 710

Query: 121 -------------------VNSSFNFQLRLGVQELKFVRNYS-EDEHMNIILDKECKGVL 180
                              + ++   + + G+Q+LK   N    D   +   + + + VL
Sbjct: 711 ARLRGSLLIKGLELCTTTDLKNAKYMEEKFGIQKLKLRWNRDLYDAETDYASENDDERVL 770

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 227
            CL+PHS V K+ I  YR V                           LPQ DQF FLKHL
Sbjct: 771 DCLKPHSNVHKMQIRGYRGVKLCNWLSFDYLGGLVNIELQSCEKLQHLPQFDQFPFLKHL 830

[Close]

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr
Match: gi|700189867|gb|KGN45100.1| (hypothetical protein Csa_7G425920 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 84/225 (37.33%), Postives = 111/225 (49.33%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL------ 120
           ++ +   I   +NLKHLD+  C  LTH+PKGLG LTSLQT NLF+L KD G DL      
Sbjct: 239 LRELPTDINNLINLKHLDVHGCYRLTHMPKGLGGLTSLQTMNLFVLGKDKGCDLSELNEL 298

Query: 121 -------------------VNSSFNFQLRLGVQELKFVRNYS-EDEHMNIILDKECKGVL 180
                              + ++   + + G+Q+LK   N    D   +   + + + VL
Sbjct: 299 ARLRGSLLIKGLELCTTTDLKNAKYMEEKFGIQKLKLRWNRDLYDAETDYASENDDERVL 358

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 227
            CL+PHS V K+ I  YR V                           LPQ DQF FLKHL
Sbjct: 359 DCLKPHSNVHKMQIRGYRGVKLCNWLSFDYLGGLVNIELQSCEKLQHLPQFDQFPFLKHL 418

[Close]

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr
Match: gi|778728529|ref|XP_011659434.1| (PREDICTED: putative disease resistance protein RGA1 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 83/227 (36.56%), Postives = 119/227 (52.42%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL--VNSS 120
           ++++ K I   +NL+HLD+ DC+ LTH+PKGLG +TSLQT ++F+L K+ G DL  +N  
Sbjct: 632 LRKLPKDINNLINLRHLDIYDCSSLTHMPKGLGGMTSLQTMSMFVLGKNKGGDLSALNGL 691

Query: 121 FNFQLRLGVQELKF-----VRNYSE----------DEHMNIILDKE---------CKGVL 180
            + +  L ++ L+F     ++N S           + H +I +D E          +GVL
Sbjct: 692 KSLRGLLCIKGLQFCTTADLKNVSYLKEMYGIQKLELHWDIKMDHEDALDDGDNDDEGVL 751

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 228
           + L+PHS ++K+ I  YR +                           LPQ DQF +LKHL
Sbjct: 752 EGLKPHSNIRKMIIKGYRGMKLCDWFSSNFLGGLVSIELSHCEKLEHLPQFDQFLYLKHL 811

[Close]

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr
Match: gi|700189869|gb|KGN45102.1| (hypothetical protein Csa_7G425940 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 83/227 (36.56%), Postives = 119/227 (52.42%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL--VNSS 120
           ++++ K I   +NL+HLD+ DC+ LTH+PKGLG +TSLQT ++F+L K+ G DL  +N  
Sbjct: 453 LRKLPKDINNLINLRHLDIYDCSSLTHMPKGLGGMTSLQTMSMFVLGKNKGGDLSALNGL 512

Query: 121 FNFQLRLGVQELKF-----VRNYSE----------DEHMNIILDKE---------CKGVL 180
            + +  L ++ L+F     ++N S           + H +I +D E          +GVL
Sbjct: 513 KSLRGLLCIKGLQFCTTADLKNVSYLKEMYGIQKLELHWDIKMDHEDALDDGDNDDEGVL 572

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 228
           + L+PHS ++K+ I  YR +                           LPQ DQF +LKHL
Sbjct: 573 EGLKPHSNIRKMIIKGYRGMKLCDWFSSNFLGGLVSIELSHCEKLEHLPQFDQFLYLKHL 632

[Close]

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr
Match: gi|778728533|ref|XP_011659435.1| (PREDICTED: putative disease resistance protein RGA1 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 9.1e-23
Identity = 83/227 (36.56%), Postives = 119/227 (52.42%), Query Frame = 1


Query: 61  IKRIAKYIKKCVNLKHLDLCDCNVLTHIPKGLGELTSLQTTNLFILKKDIGHDL--VNSS 120
           ++++ K I   +NL+HLD+ DC+ LTH+PKGLG +TSLQT ++F+L K+ G DL  +N  
Sbjct: 632 LRKLPKDINNLINLRHLDIYDCSSLTHMPKGLGGMTSLQTMSMFVLGKNKGGDLSALNGL 691

Query: 121 FNFQLRLGVQELKF-----VRNYSE----------DEHMNIILDKE---------CKGVL 180
            + +  L ++ L+F     ++N S           + H +I +D E          +GVL
Sbjct: 692 KSLRGLLCIKGLQFCTTADLKNVSYLKEMYGIQKLELHWDIKMDHEDALDDGDNDDEGVL 751

Query: 181 KCLQPHSKVQKIDIYQYRKV---------------------------LPQSDQFTFLKHL 228
           + L+PHS ++K+ I  YR +                           LPQ DQF +LKHL
Sbjct: 752 EGLKPHSNIRKMIIKGYRGMKLCDWFSSNFLGGLVSIELSHCEKLEHLPQFDQFLYLKHL 811

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g08660.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08660.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5Z6_CUCSA	8.0e-26	37.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425920 PE=4 SV=1	[more]
A0A0A0K9P7_CUCSA	6.3e-23	36.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G425940 PE=3 SV=1	[more]
A0A0A0KIT2_CUCSA	3.8e-20	34.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G375730 PE=3 SV=1	[more]
A0A0D2SQD1_GOSRA	9.1e-14	30.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G364300 PE=3 SV=1	[more]
B9SL89_RICCO	4.5e-13	30.83	Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE...	[more]

BLAST of Cp4.1LG04g08660.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG04g08660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778728520\|ref\|XP_011659433.1\|	1.1e-25	37.33	PREDICTED: putative disease resistance protein RGA4 [Cucumis sativus]	[more]
gi\|700189867\|gb\|KGN45100.1\|	1.1e-25	37.33	hypothetical protein Csa_7G425920 [Cucumis sativus]	[more]
gi\|778728529\|ref\|XP_011659434.1\|	9.1e-23	36.56	PREDICTED: putative disease resistance protein RGA1 isoform X1 [Cucumis sativus]	[more]
gi\|700189869\|gb\|KGN45102.1\|	9.1e-23	36.56	hypothetical protein Csa_7G425940 [Cucumis sativus]	[more]
gi\|778728533\|ref\|XP_011659435.1\|	9.1e-23	36.56	PREDICTED: putative disease resistance protein RGA1 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g08660	Cp4.1LG04g08660	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08660.1	Cp4.1LG04g08660.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g08660.1:cds:007	Cp4.1LG04g08660.1:cds:007	CDS
Cp4.1LG04g08660.1:cds:006	Cp4.1LG04g08660.1:cds:006	CDS
Cp4.1LG04g08660.1:cds:005	Cp4.1LG04g08660.1:cds:005	CDS
Cp4.1LG04g08660.1:cds:004	Cp4.1LG04g08660.1:cds:004	CDS
Cp4.1LG04g08660.1:cds:003	Cp4.1LG04g08660.1:cds:003	CDS
Cp4.1LG04g08660.1:cds:002	Cp4.1LG04g08660.1:cds:002	CDS
Cp4.1LG04g08660.1:cds:001	Cp4.1LG04g08660.1:cds:001	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF52047	RNI-like	coord: 141..219 score: 1.29E-10coord: 60..103 score: 1.29