Cp4.1LG04g03500.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTGACTCAACCATGGTTAACCTCAATAAATAAAATAAAATAAAAGCCATTTACATTTAAAAAATAAAAAATAAAACTCAGCTATAAGAATAGCCTTGAGAATTGAGCAGCCCAGCCCAAGATCCGATCAATTGCTCTGCTCAGAGACTCTGAGAAGAAAGCTCTGTGGAACCATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGGTATTTTTCTGTTCCTGTTCGGATTAATTTGGTTTTTGATTGATGGAATTTGTTCATAGCCTGTTGATTTTATCTTTGTTTGATTGAATGTATCTATTTTAGGTTAGGATTGAGTAGGGAGATGATTTTGGATATGTTTAAGCATTTGGCGGAGTGGACGATGAATTTGAAGTTAGTAGAATTTATTCCAGTCTTGTAGAGATTCAATAGACATAACTTGGTTGTTATTCAGCTTTTCTAGACCATTTTTAGAAGAATGTCATTTCTAGATTCTTGATATATGTAGTTGATGATGCTGATAGAAGTTTTGGTTTCTTTTTTGATTTTAAGTTCAATAATATGGAGACCAGGATTCAATCCTGTAATCTCTTGGTTGATGGTATGTGTTAGGAATTACAAATCTCCACAATAGTATGATATTGTACACTTTGAGCATAAACTCTCATGGTTTTGTTTTTGGTCGTTGTATTCCTTATTTATAAACTCATGATCAGCTCCTTAATTAGTCGATGTGGGGCTCATCTCCCAACAATCTCTCTCATCGAACAAAGTACACCATAGAGCCTCCTCGGAGGCCTATGGAGCCTTCGAACAACCTCCCCTTAATCGAGACTCGACTCCTTCTCTAGAGCCTCAAACAAAATACACCCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTAGAGACTCAACTTCTTTGTTCAACATTTGAGGAAACCACGAACCTCCACAATGGTATGATATTGTCCACATTGAGAACAAACTCTCGTGGTTTTGCTTTTAATTTTTCCAAAAGGGCTCATACCAATGGAGATGTATTCTTTACTTATAAACCCATGATCAATCTCTTAATTAGTCGATGTGGACTCTTGTACCAACAGTATGTGCTTTAACTAGCTGAATAATGCTCGGGTTGACCTAATCGAAATAATAGTTAGGTGGGATAGCTTTGTATGATGTTTTTAATTTCATAAGCTAGTATTGAACTAGCTTGGGAACTGCATTCTTGTCAATAAACTAAGGATTCAACATCAGACTTTTGGCTTTAAATGGTGCATTTGAGATAGCTAACTGCAAGATAAAAAGGATTTTTCTGCTTCGTTTGTTAACCTTCTTGTAGGGATACGCTAGTTTCTATATCATTTCCTTCAGAGAAATTTTACTTGTATTGAATCACATTATCTGGCTGTGTGATTTCAGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGAAGTGCCATCCTAGATCGCCAACGGTCTGTCTGTCCCGACCGAGCATATCACATTGTCGGACTGAGGATGTTGGTTCTTTAGGTAATGGTGCAACTCTCTCTTTTAACCTTCTAGCAGTCTTTCATTGTATGAGTGGTAATGGTTCGAATGAGCTTGATTTTTTAGTTTGATCCAATTCTTAGAGGCTCATTTGGTTGAAATATTTGATCGTTTTAAGAATAAAATTGAGTTAAGCCGAATCGAATTACATGAATGGTATTAATCCTTTTTTTAGCATTCGTATCACGATTTTACCATGGCTAAATTTTAGAGAC TTTTGACTCAACCATGGTTAACCTCAATAAATAAAATAAAATAAAAGCCATTTACATTTAAAAAATAAAAAATAAAACTCAGCTATAAGAATAGCCTTGAGAATTGAGCAGCCCAGCCCAAGATCCGATCAATTGCTCTGCTCAGAGACTCTGAGAAGAAAGCTCTGTGGAACCATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGAAGTGCCATCCTAGATCGCCAACGGTCTGTCTGTCCCGACCGAGCATATCACATTGTCGGACTGAGGATGTTGGTTCTTTAGGTAATGGTGCAACTCTCTCTTTTAACCTTCTAGCAGTCTTTCATTGTATGAGTGGTAATGGTTCGAATGAGCTTGATTTTTTAGTTTGATCCAATTCTTAGAGGCTCATTTGGTTGAAATATTTGATCGTTTTAAGAATAAAATTGAGTTAAGCCGAATCGAATTACATGAATGGTATTAATCCTTTTTTTAGCATTCGTATCACGATTTTACCATGGCTAAATTTTAGAGAC ATGGGCGCTCTTCTCAAGCTCGTTGACGCTCTATTGTTCCTCGCATTTCTCGTACTTGCCGTCGTTGTGCCTTTAATCGATTTCCAGGAGGTATTGCCTAAAAGCCTTTACCCTGATTCTGTAATCGATCTCAAGAGGTGGTACGTCGCCCGATCGGGGGATTATTTAATGGCCGAGGCTCCTCATTTCGTCGTTGGCCTTATTTGGTTCGAGCTTCTTTTTCAATGGCCTCTTTTGTTTCTCAATCTCTATGCCTTCTTCAGCTCCAAGGCTTGGTACAGGACCACTTGCTTGATCTATGGCGTTTCTCTCGTGTCTTCCATGTCTGCTGTGATGGGTGAAGTGGTTGGATCAAACCGGGCATCTAATACTCTGTTGACAATCTACTGGCCCTTCATGGGTTTGGGGGTGTTGGCCGTGCTACGCGGGCTCGTGCCATGCTCGAGCAAGGCTACGATCAACGGACCCAGACCATCAAATGGCAGGAAAAAGAGGGCTTGA MGALLKLVDALLFLAFLVLAVVVPLIDFQEVLPKSLYPDSVIDLKRWYVARSGDYLMAEAPHFVVGLIWFELLFQWPLLFLNLYAFFSSKAWYRTTCLIYGVSLVSSMSAVMGEVVGSNRASNTLLTIYWPFMGLGVLAVLRGLVPCSSKATINGPRPSNGRKKRA
BLAST of Cp4.1LG04g03500.1 vs. Swiss-Prot
Match: TMM97_XENTR (Transmembrane protein 97 OS=Xenopus tropicalis GN=tmem97 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10 Identity = 43/154 (27.92%), Postives = 76/154 (49.35%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. Swiss-Prot
Match: TMM97_BOVIN (Transmembrane protein 97 OS=Bos taurus GN=TMEM97 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 5.1e-07 Identity = 34/107 (31.78%), Postives = 58/107 (54.21%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. Swiss-Prot
Match: TMM97_RAT (Transmembrane protein 97 OS=Rattus norvegicus GN=Tmem97 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07 Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. Swiss-Prot
Match: TMM97_MOUSE (Transmembrane protein 97 OS=Mus musculus GN=Tmem97 PE=1 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06 Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TrEMBL
Match: A0A0A0K5K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G044230 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 2.5e-61 Identity = 121/166 (72.89%), Postives = 142/166 (85.54%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TrEMBL
Match: A0A059DG37_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01714 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.3e-46 Identity = 98/167 (58.68%), Postives = 129/167 (77.25%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TrEMBL
Match: V7AG62_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G104500g PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 2.3e-46 Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TrEMBL
Match: B9SDV6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0486820 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 1.1e-45 Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TrEMBL
Match: A0A0L9V5M3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g118700 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45 Identity = 102/167 (61.08%), Postives = 125/167 (74.85%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TAIR10
Match: AT2G32380.1 (AT2G32380.1 Transmembrane protein 97, predicted) HSP 1 Score: 172.2 bits (435), Expect = 2.7e-43 Identity = 87/168 (51.79%), Postives = 124/168 (73.81%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TAIR10
Match: AT1G05210.1 (AT1G05210.1 Transmembrane protein 97, predicted) HSP 1 Score: 171.8 bits (434), Expect = 3.6e-43 Identity = 85/152 (55.92%), Postives = 114/152 (75.00%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. TAIR10
Match: AT1G05220.1 (AT1G05220.1 Transmembrane protein 97, predicted) HSP 1 Score: 143.7 bits (361), Expect = 1.0e-34 Identity = 72/150 (48.00%), Postives = 106/150 (70.67%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: gi|449453494|ref|XP_004144492.1| (PREDICTED: transmembrane protein 97-like [Cucumis sativus]) HSP 1 Score: 243.0 bits (619), Expect = 3.6e-61 Identity = 121/166 (72.89%), Postives = 142/166 (85.54%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: gi|659111037|ref|XP_008455545.1| (PREDICTED: uncharacterized protein LOC103495696, partial [Cucumis melo]) HSP 1 Score: 233.0 bits (593), Expect = 3.7e-58 Identity = 117/163 (71.78%), Postives = 141/163 (86.50%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: gi|702244222|ref|XP_010051049.1| (PREDICTED: transmembrane protein 97-like [Eucalyptus grandis]) HSP 1 Score: 193.4 bits (490), Expect = 3.3e-46 Identity = 98/167 (58.68%), Postives = 129/167 (77.25%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: gi|593214827|ref|XP_007132555.1| (hypothetical protein PHAVU_011G104500g [Phaseolus vulgaris]) HSP 1 Score: 193.4 bits (490), Expect = 3.3e-46 Identity = 101/167 (60.48%), Postives = 126/167 (75.45%), Query Frame = 1
BLAST of Cp4.1LG04g03500.1 vs. NCBI nr
Match: gi|502171632|ref|XP_004515073.1| (PREDICTED: transmembrane protein 97-like [Cicer arietinum]) HSP 1 Score: 193.4 bits (490), Expect = 3.3e-46 Identity = 103/167 (61.68%), Postives = 125/167 (74.85%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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