Cp4.1LG04g01560.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g01560.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing family protein
Location	Cp4.1LG04 : 550468 .. 552389 (+)
Sequence length	1470

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGACTTCGGATCTCGGCCGTTCATCAGATTTTCCCACCCAACGCCCACAATTCCAATTCCAATTTCCTCTCCAGAAAGCATCAATTCCTCTCCCTTATTAAGCTCTGTTCTTCACCAAATCATCTATTTCAAATCCATTCTCAAATCATCGTCTCTGGCCTCCAAAATGACTCATTTCTCACCACTGAACTCCTCCGCTTTGCTGCTCTATCGCCTTCCAGAAATCTTAGCTATGCCCGCTCTCTCCTCTTCCGTTACAACCTTCATTTCTCTCCTTTTCCATGGAATTGCATCATCAGAGGATATGCCTCGAGCGATTCTCCACGAGAGGCCATTTGGGTATTTGAGGACATGCGAAGACGAGGAATCAGACCCAATAATCTCACCTTCCCCTTCCTTATCAAAGCCTGCGCCACGCTCACGACGCTCCAAGAAGGTAAGAAATTTCATGCTGATGCCATTAAGTGTGGTTTAGATTTAGATGTTTATGTTCGGAACACTTTGATTAATTTCTATGGGTCCTGTAAAAGAATGTCTGGTGCGCGGAAGGTATTCGACGAAATGTCTGTAAGAACTTTAGTTTCATGGAATGCGGTTATTACAGCATGTGTTGAGAATTTTTGCTTTGATAAAGCTATTGAGTACTTTTTGAAAATGGGTAACCATGGTTTTGAGCCGGATGAAACTACAATGGTGGTTATATTATCAGCTTGTGCAGAGCTTGGTAACTTAAGCTTAGGAAGATGGGTTCATTCTCAAGTGGTGGAAAGGGGGATGGTTTTGAATGTTCAATTGGGCACTGCCCTCGTTGATATGTATGCAAAATCTGGCGATGTTGGATGTGCTAGACTTGTATTCAATTGTTTGAAACAGAGAAGTGTATGGACGTGGAGTGCAATGATTTTGGGGTTAGCCCAACATGGATTTGCCAATGAAGCCATTGAGCTTTTCACAAATATGATGAGCTCCTCTGTGACGCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCTTGCAGCCATGCTGGATTGGTGGATAAAGGATACCATTACTTCAACATTATGGAGAGAGTGTACGGGATTAAGCCGATGATGATACATTATGGGTCGATGGTGGATGTTTTATGTCGTGCAAGTAGAGTCAAGGAGGCTTATGAGTTCATCATGAGGATGCCTGTGGAGCCTGATCCAATTGTGTGGAGGACATTGCTGAGTGCGTGCAGTGCTCGCGATGTAGATGGTGGGGCTCAGGTTGTGGAGGAGGCGAGGAAGAGGCTGCTTGAGCTCGAGCCGAAGAGGGGCGGGAATGTGGTGATGGTTGCAAACATGTTTGCGGAAGTTGGGATGTGGAAACAGGCAGCAGATTGCCGGAGGGCCATGAAAGATGGAGGGATGAAAAAGATGGCAGGGGAGAGTTGCGTGGAAGTTGGTGGCTCTTTGCGCAAATTCTTCTCAGGTTTTGATGGTCGGGCTGATTCTGATGGCATCTATGATTTGCTTGATGGATTGAACCTGCATATGCAAATGGTTAACTTCTAATTACTTCATTTACAAATTTTCTTTTTTTCCTTTTTCTTCAAGTTTCCGTCTTCTAAGGCTCTCAATAAAATCTCATAAGTTCAAAGATACAAAAAGAAAAGTAATGAAGCATTCATACTTGTCATGCTCGGGTGTTACTAATGATTAGTATGATGCATCATGTATTATAATTTGATGTTTTCTACTCATAGGATTTCATAATATGTGTATAATTTATATAGGTATGAGAAATAATATATTCATTTTTCTTTCTTTCTATGACTCTACAAGGATCTCCATCAATATATTGTGAGGTCGGTGTGTAAGAATTTGACGATACATATGAAATCGATGCATACCCACATGGTCTAGTGATTACAAAATCGGTAGGAGATTAG

mRNA sequence

ATGGTTCGACTTCGGATCTCGGCCGTTCATCAGATTTTCCCACCCAACGCCCACAATTCCAATTCCAATTTCCTCTCCAGAAAGCATCAATTCCTCTCCCTTATTAAGCTCTGTTCTTCACCAAATCATCTATTTCAAATCCATTCTCAAATCATCGTCTCTGGCCTCCAAAATGACTCATTTCTCACCACTGAACTCCTCCGCTTTGCTGCTCTATCGCCTTCCAGAAATCTTAGCTATGCCCGCTCTCTCCTCTTCCGTTACAACCTTCATTTCTCTCCTTTTCCATGGAATTGCATCATCAGAGGATATGCCTCGAGCGATTCTCCACGAGAGGCCATTTGGGTATTTGAGGACATGCGAAGACGAGGAATCAGACCCAATAATCTCACCTTCCCCTTCCTTATCAAAGCCTGCGCCACGCTCACGACGCTCCAAGAAGGTAAGAAATTTCATGCTGATGCCATTAAGTGTGGTTTAGATTTAGATGTTTATGTTCGGAACACTTTGATTAATTTCTATGGGTCCTGTAAAAGAATGTCTGGTGCGCGGAAGGTATTCGACGAAATGTCTGTAAGAACTTTAGTTTCATGGAATGCGGTTATTACAGCATGTGTTGAGAATTTTTGCTTTGATAAAGCTATTGAGTACTTTTTGAAAATGGGTAACCATGGTTTTGAGCCGGATGAAACTACAATGGTGGTTATATTATCAGCTTGTGCAGAGCTTGGTAACTTAAGCTTAGGAAGATGGGTTCATTCTCAAGTGGTGGAAAGGGGGATGGTTTTGAATGTTCAATTGGGCACTGCCCTCGTTGATATGTATGCAAAATCTGGCGATGTTGGATGTGCTAGACTTGTATTCAATTGTTTGAAACAGAGAAGTGTATGGACGTGGAGTGCAATGATTTTGGGGTTAGCCCAACATGGATTTGCCAATGAAGCCATTGAGCTTTTCACAAATATGATGAGCTCCTCTGTGACGCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCTTGCAGCCATGCTGGATTGGTGGATAAAGGATACCATTACTTCAACATTATGGAGAGAGTGTACGGGATTAAGCCGATGATGATACATTATGGGTCGATGGTGGATGTTTTATGTCGTGCAAGTAGAGTCAAGGAGGCTTATGAGTTCATCATGAGGATGCCTGTGGAGCCTGATCCAATTGTGTGGAGGACATTGCTGAGTGCGTGCAGTGCTCGCGATGTAGATGGTGGGGCTCAGGTTGTGGAGGAGGCGAGGAAGAGGCTGCTTGAGCTCGAGCCGAAGAGGGGCGGGAATGTGGTGATGGTTGCAAACATGTTTGCGGAAGTTGGGATGTGGAAACAGGCAGCAGATTGCCGGAGGGCCATGAAAGATGGAGGGATGAAAAAGATGGCAGGGGAGAGTTGCGTGGAAGTTGGTGGCTCTTTGCGCAAATTCTTCTCAGGAGATTAG

Coding sequence (CDS)

ATGGTTCGACTTCGGATCTCGGCCGTTCATCAGATTTTCCCACCCAACGCCCACAATTCCAATTCCAATTTCCTCTCCAGAAAGCATCAATTCCTCTCCCTTATTAAGCTCTGTTCTTCACCAAATCATCTATTTCAAATCCATTCTCAAATCATCGTCTCTGGCCTCCAAAATGACTCATTTCTCACCACTGAACTCCTCCGCTTTGCTGCTCTATCGCCTTCCAGAAATCTTAGCTATGCCCGCTCTCTCCTCTTCCGTTACAACCTTCATTTCTCTCCTTTTCCATGGAATTGCATCATCAGAGGATATGCCTCGAGCGATTCTCCACGAGAGGCCATTTGGGTATTTGAGGACATGCGAAGACGAGGAATCAGACCCAATAATCTCACCTTCCCCTTCCTTATCAAAGCCTGCGCCACGCTCACGACGCTCCAAGAAGGTAAGAAATTTCATGCTGATGCCATTAAGTGTGGTTTAGATTTAGATGTTTATGTTCGGAACACTTTGATTAATTTCTATGGGTCCTGTAAAAGAATGTCTGGTGCGCGGAAGGTATTCGACGAAATGTCTGTAAGAACTTTAGTTTCATGGAATGCGGTTATTACAGCATGTGTTGAGAATTTTTGCTTTGATAAAGCTATTGAGTACTTTTTGAAAATGGGTAACCATGGTTTTGAGCCGGATGAAACTACAATGGTGGTTATATTATCAGCTTGTGCAGAGCTTGGTAACTTAAGCTTAGGAAGATGGGTTCATTCTCAAGTGGTGGAAAGGGGGATGGTTTTGAATGTTCAATTGGGCACTGCCCTCGTTGATATGTATGCAAAATCTGGCGATGTTGGATGTGCTAGACTTGTATTCAATTGTTTGAAACAGAGAAGTGTATGGACGTGGAGTGCAATGATTTTGGGGTTAGCCCAACATGGATTTGCCAATGAAGCCATTGAGCTTTTCACAAATATGATGAGCTCCTCTGTGACGCCTAACTATGTCACTTTCATTGGTGTCCTATGTGCTTGCAGCCATGCTGGATTGGTGGATAAAGGATACCATTACTTCAACATTATGGAGAGAGTGTACGGGATTAAGCCGATGATGATACATTATGGGTCGATGGTGGATGTTTTATGTCGTGCAAGTAGAGTCAAGGAGGCTTATGAGTTCATCATGAGGATGCCTGTGGAGCCTGATCCAATTGTGTGGAGGACATTGCTGAGTGCGTGCAGTGCTCGCGATGTAGATGGTGGGGCTCAGGTTGTGGAGGAGGCGAGGAAGAGGCTGCTTGAGCTCGAGCCGAAGAGGGGCGGGAATGTGGTGATGGTTGCAAACATGTTTGCGGAAGTTGGGATGTGGAAACAGGCAGCAGATTGCCGGAGGGCCATGAAAGATGGAGGGATGAAAAAGATGGCAGGGGAGAGTTGCGTGGAAGTTGGTGGCTCTTTGCGCAAATTCTTCTCAGGAGATTAG

Protein sequence

MVRLRISAVHQIFPPNAHNSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSGD

Homology

[Close]

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot
Match: PP188_ARATH (Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 4.4e-160
Identity = 280/471 (59.45%), Postives = 360/471 (76.43%), Query Frame = 1


Query: 19  NSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNL 78
           +S+S F SRKHQ L  +KLCSS  HL QIH QI +S LQNDSF+ +EL+R ++LS +++L
Sbjct: 4   SSDSCFKSRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDL 63

Query: 79  SYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKA 138
           ++AR+LL  ++   +P  WN + RGY+SSDSP E+IWV+ +M+RRGI+PN LTFPFL+KA
Sbjct: 64  AFARTLLL-HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKA 123

Query: 139 CATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSW 198
           CA+   L  G++   + +K G D DVYV N LI+ YG+CK+ S ARKVFDEM+ R +VSW
Sbjct: 124 CASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSW 183

Query: 199 NAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVE 258
           N+++TA VEN   +   E F +M    F PDETTMVV+LSAC   GNLSLG+ VHSQV+ 
Sbjct: 184 NSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMV 243

Query: 259 RGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIEL 318
           R + LN +LGTALVDMYAKSG +  ARLVF  +  ++VWTWSAMI+GLAQ+GFA EA++L
Sbjct: 244 RELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQL 303

Query: 319 FTNMMS-SSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVL 378
           F+ MM  SSV PNYVTF+GVLCACSH GLVD GY YF+ ME+++ IKPMMIHYG+MVD+L
Sbjct: 304 FSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDIL 363

Query: 379 CRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGG 438
            RA R+ EAY+FI +MP EPD +VWRTLLSACS    +    + E+ +KRL+ELEPKR G
Sbjct: 364 GRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSG 423

Query: 439 NVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
           N+V+VAN FAE  MW +AA+ RR MK+  MKK+AGESC+E+GGS  +FFSG
Sbjct: 424 NLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSG 471

[Close]

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 334.0 bits (855), Expect = 2.8e-90
Identity = 175/455 (38.46%), Postives = 280/455 (61.54%), Query Frame = 1


Query: 39  SSPNHLFQIHSQIIVSGLQ-NDSFLTTELLRFAALSPSRN-LSYARSLLFRYNLHFSPFP 98
           SS   L QIH+  I  G+  +D+ L   L+ +    PS   +SYA  +  +     + F 
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 99  WNCIIRGYASSDSPREAIWVFEDMRRRG-IRPNNLTFPFLIKACATLTTLQEGKKFHADA 158
           WN +IRGYA   +   A  ++ +MR  G + P+  T+PFLIKA  T+  ++ G+  H+  
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 159 IKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAI 218
           I+ G    +YV+N+L++ Y +C  ++ A KVFD+M  + LV+WN+VI    EN   ++A+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 219 EYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMY 278
             + +M + G +PD  T+V +LSACA++G L+LG+ VH  +++ G+  N+     L+D+Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 279 AKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSS-SVTPNYVTF 338
           A+ G V  A+ +F+ +  ++  +W+++I+GLA +GF  EAIELF  M S+  + P  +TF
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 339 IGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMP 398
           +G+L ACSH G+V +G+ YF  M   Y I+P + H+G MVD+L RA +VK+AYE+I  MP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 399 VEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQ 458
           ++P+ ++WRTLL AC+   V G + + E AR ++L+LEP   G+ V+++NM+A    W  
Sbjct: 388 MQPNVVIWRTLLGACT---VHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSD 447

Query: 459 AADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
               R+ M   G+KK+ G S VEVG  + +F  GD
Sbjct: 448 VQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGD 479

[Close]

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 331.3 bits (848), Expect = 1.8e-89
Identity = 175/457 (38.29%), Postives = 274/457 (59.96%), Query Frame = 1


Query: 34  LIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRN-LSYARSLLFRYNLHF 93
           LI  C+S   L QI +  I S +++ SF+  +L+ F   SP+ + +SYAR L F      
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIEDVSFVA-KLINFCTESPTESSMSYARHL-FEAMSEP 94

Query: 94  SPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFH 153
               +N + RGY+   +P E   +F ++   GI P+N TFP L+KACA    L+EG++ H
Sbjct: 95  DIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH 154

Query: 154 ADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFD 213
             ++K GLD +VYV  TLIN Y  C+ +  AR VFD +    +V +NA+IT        +
Sbjct: 155 CLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPN 214

Query: 214 KAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALV 273
           +A+  F +M     +P+E T++ +LS+CA LG+L LG+W+H    +      V++ TAL+
Sbjct: 215 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALI 274

Query: 274 DMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSSSVTPNYV 333
           DM+AK G +  A  +F  ++ +    WSAMI+  A HG A +++ +F  M S +V P+ +
Sbjct: 275 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 334

Query: 334 TFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMR 393
           TF+G+L ACSH G V++G  YF+ M   +GI P + HYGSMVD+L RA  +++AYEFI +
Sbjct: 335 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDK 394

Query: 394 MPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMW 453
           +P+ P P++WR LL+ACS+ +      + E+  +R+ EL+   GG+ V+++N++A    W
Sbjct: 395 LPISPTPMLWRILLAACSSHN---NLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKW 454

Query: 454 KQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
           +     R+ MKD    K+ G S +EV   + +FFSGD
Sbjct: 455 EYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGD 486

[Close]

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 318.9 bits (816), Expect = 9.5e-86
Identity = 186/501 (37.13%), Postives = 287/501 (57.29%), Query Frame = 1


Query: 9   VHQIFP--PNAHNSNSNFLSRKHQ-FLSLIKLCSSPNHLFQIHSQIIVSGLQNDS---FL 68
           VH + P  P A + +++     HQ   SL + CS  + L Q+H+  + +    +    FL
Sbjct: 26  VHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFL 85

Query: 69  TTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPRE-AIWVFEDMR 128
             ++L+ +  S   +++YA  +      H S F WN +IR  A   S +E A  ++  M 
Sbjct: 86  YGKILQLS--SSFSDVNYAFRVFDSIENH-SSFMWNTLIRACAHDVSRKEEAFMLYRKML 145

Query: 129 RRG-IRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRM 188
            RG   P+  TFPF++KACA +    EGK+ H   +K G   DVYV N LI+ YGSC  +
Sbjct: 146 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 205

Query: 189 SGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSAC 248
             ARKVFDEM  R+LVSWN++I A V    +D A++ F +M    FEPD  TM  +LSAC
Sbjct: 206 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSAC 265

Query: 249 AELGNLSLGRWVHSQVVER---GMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVW 308
           A LG+LSLG W H+ ++ +    + ++V +  +L++MY K G +  A  VF  +++R + 
Sbjct: 266 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 325

Query: 309 TWSAMILGLAQHGFANEAIELFTNMMSS--SVTPNYVTFIGVLCACSHAGLVDKGYHYFN 368
           +W+AMILG A HG A EA+  F  M+    +V PN VTF+G+L AC+H G V+KG  YF+
Sbjct: 326 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 385

Query: 369 IMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVD 428
           +M R Y I+P + HYG +VD++ RA  + EA + +M MP++PD ++WR+LL AC  +   
Sbjct: 386 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK--G 445

Query: 429 GGAQVVEEARKRLL----ELEPKRG---GNVVMVANMFAEVGMWKQAADCRRAMKDGGMK 488
              ++ EE  + ++    + E   G   G  V+++ ++A    W      R+ M + G++
Sbjct: 446 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 505

Query: 489 KMAGESCVEVGGSLRKFFSGD 490
           K  G S +E+ G   +FF+GD
Sbjct: 506 KEPGCSSIEINGISHEFFAGD 520

[Close]

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 8.9e-84
Identity = 169/451 (37.47%), Postives = 256/451 (56.76%), Query Frame = 1


Query: 44  LFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRG 103
           L Q+H+ +IV+G      L T+L+  A    +R ++Y   L     L    F +N +I+ 
Sbjct: 25  LQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLP-DDFLFNSVIKS 84

Query: 104 YASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLD 163
            +    P   +  +  M    + P+N TF  +IK+CA L+ L+ GK  H  A+  G  LD
Sbjct: 85  TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 144

Query: 164 VYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGN 223
            YV+  L+ FY  C  M GAR+VFD M  +++V+WN++++   +N   D+AI+ F +M  
Sbjct: 145 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 204

Query: 224 HGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGC 283
            GFEPD  T V +LSACA+ G +SLG WVH  ++  G+ LNV+LGTAL+++Y++ GDVG 
Sbjct: 205 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 264

Query: 284 ARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSS-SVTPNYVTFIGVLCACS 343
           AR VF+ +K+ +V  W+AMI     HG+  +A+ELF  M       PN VTF+ VL AC+
Sbjct: 265 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 324

Query: 344 HAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPV---EPDP 403
           HAGLV++G   +  M + Y + P + H+  MVD+L RA  + EAY+FI ++        P
Sbjct: 325 HAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP 384

Query: 404 IVWRTLLSACSA-RDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADC 463
            +W  +L AC   R+ D G ++     KRL+ LEP   G+ VM++N++A  G   + +  
Sbjct: 385 ALWTAMLGACKMHRNYDLGVEIA----KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHI 444

Query: 464 RRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
           R  M    ++K  G S +EV      F  GD
Sbjct: 445 RDGMMRNNLRKQVGYSVIEVENKTYMFSMGD 468

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL
Match: A0A0A0K153_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007910 PE=4 SV=1)

HSP 1 Score: 847.4 bits (2188), Expect = 8.5e-243
Identity = 416/490 (84.90%), Postives = 444/490 (90.61%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNAHNSNSN--FLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQN 60
           MVRL ISAVHQ FP N HN +S   FLS KHQ LSL+  CSS NHLF+IH+QI+VSGLQN
Sbjct: 1   MVRLWISAVHQFFPINVHNYSSKPKFLSTKHQLLSLLNHCSSTNHLFEIHAQILVSGLQN 60

Query: 61  DSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFE 120
           DSF TTELLR AALSPSRNLSY  SLLF  + H +  PWN IIRGY+SSDSP+EAI +F 
Sbjct: 61  DSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFG 120

Query: 121 DMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCK 180
           +MRRRG+RPNNLTFPFL+KACATL TLQEGK+FHA AIKCGLDLDVYVRNTLI FYGSCK
Sbjct: 121 EMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCK 180

Query: 181 RMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILS 240
           RMSGARKVFDEM+ RTLVSWNAVITACVENFCFD+AI+YFLKMGNHGFEPDETTMVVILS
Sbjct: 181 RMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILS 240

Query: 241 ACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWT 300
           ACAELGNLSLGRWVHSQVV RGMVLNVQLGTA VDMYAKSGDVGCAR VFNCLKQ+SVWT
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWT 300

Query: 301 WSAMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIME 360
           WSAMILGLAQHGFANEAIELFTNMMSS + PN+VTFIGVLCACSHAGLVDK YHYFN+ME
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLME 360

Query: 361 RVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGA 420
           RVYGIKPMMIHYGSMVDVL RA +VKEAYE IM MPVEPDPIVWRTLLSACS RDV+GGA
Sbjct: 361 RVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGA 420

Query: 421 QVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEV 480
           +V EEARKRLLELEPKRGGNVVMVAN FAE+GMWKQAAD RR MKD G+KKMAGESC+E+
Sbjct: 421 EVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIEL 480

Query: 481 GGSLRKFFSG 489
           GGSLRKFFSG
Sbjct: 481 GGSLRKFFSG 490

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL
Match: M5WZ10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004522mg PE=4 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 2.2e-182
Identity = 315/488 (64.55%), Postives = 387/488 (79.30%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNAHNSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDS 60
           MVRL I        P A+N NSNF S+K Q L L+ LC +   L Q+H+QI VSG Q D 
Sbjct: 1   MVRLPI--------PTANNCNSNFGSKKQQCLYLLNLCFTFKQLSQVHAQIQVSGFQRDH 60

Query: 61  FLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDM 120
           FL T+L+RF ALSPS+N +YAR+LL  ++    P  WN +IRGYASSD+PREAIW F  M
Sbjct: 61  FLLTQLIRFCALSPSKNFNYARTLL-DHSESSPPSSWNFLIRGYASSDTPREAIWAFRAM 120

Query: 121 RRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRM 180
             RGIRPN LTFPFLIK+CA+   L+EG++ H   +KCGLD DVYV+N L++FYG+CK++
Sbjct: 121 LGRGIRPNQLTFPFLIKSCASAAALKEGRQVHVGVVKCGLDCDVYVQNNLVHFYGACKKI 180

Query: 181 SGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSAC 240
             A++VFD MSVRT+VSWNAV+TACVENF  D+ I YF+KM + GFEPDETTMVV+L+A 
Sbjct: 181 KDAQRVFDGMSVRTVVSWNAVLTACVENFWLDEGIGYFVKMRDCGFEPDETTMVVMLNAS 240

Query: 241 AELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWS 300
           +ELGNLSLG+WVHSQV+E+G++LN QLGTALVDMYAKSG +  ARLVF+ ++ R+VWTWS
Sbjct: 241 SELGNLSLGKWVHSQVIEKGLILNCQLGTALVDMYAKSGALVYARLVFDRMELRNVWTWS 300

Query: 301 AMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERV 360
           AMILGLAQHGFA EA+ELF  M++ SV PNYVTF+GVLCACSHAG VD GY YF+ ME V
Sbjct: 301 AMILGLAQHGFAKEALELFPKMLNFSVRPNYVTFLGVLCACSHAGQVDDGYQYFHDMEHV 360

Query: 361 YGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQV 420
           +GIKPMMIHYG+MVD+L RA R+ EAY FIM MP +PDPIVWRTLLSAC+ RD +    V
Sbjct: 361 HGIKPMMIHYGAMVDILGRAGRLNEAYSFIMSMPFDPDPIVWRTLLSACNTRDANDDEGV 420

Query: 421 VEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGG 480
             +  ++LLELEP RGGN+VMVANM+AEVGMW++AA+ R+ MK+  +KK AGESCVE+GG
Sbjct: 421 GNKVSEKLLELEPSRGGNLVMVANMYAEVGMWEKAANLRKVMKERRVKKTAGESCVELGG 479

Query: 481 SLRKFFSG 489
           S+ KFFSG
Sbjct: 481 SIHKFFSG 479

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL
Match: B9T0U0_RICCO (Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_0340700 PE=3 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 8.7e-179
Identity = 301/458 (65.72%), Postives = 373/458 (81.44%), Query Frame = 1


Query: 32   LSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSYARSLLFRYNLH 91
            LSL+KLCSS  HL+QIHSQI VSGLQ D+FL T+L++F++LSPS++LSYA+S+L  +++H
Sbjct: 668  LSLLKLCSSIKHLYQIHSQIQVSGLQGDTFLVTQLIKFSSLSPSKDLSYAQSIL-DHSVH 727

Query: 92   FSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKF 151
              P PWN +IRGYA S++P++A++V+ +MR  GIRPN+LTFPFL+KACA     +EGK+ 
Sbjct: 728  PVPLPWNILIRGYADSNTPKDALFVYRNMRNEGIRPNSLTFPFLLKACAACFATKEGKQV 787

Query: 152  HADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCF 211
            H + IK GLD DVYV N L+NFYGSCK++  A KVFDEM  RT+VSWNAVIT+CVE+   
Sbjct: 788  HVEVIKYGLDCDVYVNNNLVNFYGSCKKILDACKVFDEMPERTVVSWNAVITSCVESLKL 847

Query: 212  DKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTAL 271
             +AI YFLKM + GFEPD TTMV++L  CAE+GNL LGRW+HSQV+ERG+VLN QLGTAL
Sbjct: 848  GEAIRYFLKMRDFGFEPDGTTMVLMLVICAEMGNLGLGRWIHSQVIERGLVLNYQLGTAL 907

Query: 272  VDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSSS-VTPN 331
            VDMYAKSG VG A+LVF+ +K+++VWTWSAMILGLAQHGFA E +ELF +MM SS + PN
Sbjct: 908  VDMYAKSGAVGYAKLVFDRMKEKNVWTWSAMILGLAQHGFAKEGLELFLDMMRSSLIHPN 967

Query: 332  YVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFI 391
            YVTF+GVLCACSHAGLV  G+ YF+ M   YGIKPMM+HYG+MVD+L RA  +KEAY FI
Sbjct: 968  YVTFLGVLCACSHAGLVSDGFRYFHEMGHTYGIKPMMVHYGAMVDILGRAGLLKEAYNFI 1027

Query: 392  MRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVG 451
             +MP +PDPIVWRTLLSACS  DV     V  + RKRLLELEP+R GN VMVANM+A+ G
Sbjct: 1028 TKMPFQPDPIVWRTLLSACSIHDVKDSTGVAYKVRKRLLELEPRRSGNFVMVANMYADAG 1087

Query: 452  MWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
            MW++AA  RR M+DGG+KK AGESCVE+ GS+ +FFSG
Sbjct: 1088 MWEKAAKVRRVMRDGGLKKKAGESCVELSGSIHRFFSG 1124

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL
Match: A0A0S3RS08_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G050100 PE=4 SV=1)

HSP 1 Score: 620.5 bits (1599), Expect = 1.7e-174
Identity = 301/470 (64.04%), Postives = 369/470 (78.51%), Query Frame = 1


Query: 22  SNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSYA 81
           + FLS+KHQ L L+ LC S   L QI +QI +SGL  D+   +EL+ F +LSPS+NL +A
Sbjct: 9   TQFLSKKHQCLFLLNLCGSMEQLHQIQAQIHLSGLYQDTHTLSELVYFCSLSPSKNLRHA 68

Query: 82  RSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACAT 141
           R+L+  +    SP  WN +IRGYA+SDSP EA WVF+ MR RG  PN LTFPFLIK+CA 
Sbjct: 69  RALV-HHAATPSPISWNILIRGYAASDSPLEAFWVFQKMRERGAMPNKLTFPFLIKSCAA 128

Query: 142 LTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAV 201
            T L EGK+ HADA KCGLD DVYV N LINFYG CKR+  ARKVFDEM  RT+VSWN+V
Sbjct: 129 ATALGEGKQVHADAFKCGLDSDVYVGNNLINFYGCCKRIVDARKVFDEMPERTVVSWNSV 188

Query: 202 ITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGM 261
           ITACVE+   D+ IEYF +M   GFEPDET+MV++LSACAELG LSLGRW HSQ+V RGM
Sbjct: 189 ITACVESLWLDEGIEYFFRMWGCGFEPDETSMVLLLSACAELGYLSLGRWAHSQLVLRGM 248

Query: 262 VLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTN 321
           VL+VQLGTALVDMY KSG +G AR VF  +++R+VWTWSAMILGLAQHGFA EA+ LF  
Sbjct: 249 VLSVQLGTALVDMYGKSGALGYARFVFERMEKRNVWTWSAMILGLAQHGFAEEALALFAM 308

Query: 322 MM---SSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLC 381
           M    +  + PNYVT++GVLCACSHAG+VD+G  YF+ ME V+GIKP+M+HYG MVDVL 
Sbjct: 309 MSINNNHDICPNYVTYLGVLCACSHAGMVDEGCQYFHDMECVHGIKPLMMHYGVMVDVLG 368

Query: 382 RASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGN 441
           RA R++EAY FI  MP+EPDP+VWRTLLSAC+  DV   A + E  RKRLL +EP+RGGN
Sbjct: 369 RAGRLEEAYWFIQMMPIEPDPVVWRTLLSACAIHDVHDHAGIGERVRKRLLRMEPRRGGN 428

Query: 442 VVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
           +V+VANM+AEVGMW++A + RR M++GGMKK+AGESCV++GGS+ +FF+G
Sbjct: 429 LVIVANMYAEVGMWEKATNVRRVMRNGGMKKLAGESCVDLGGSMHRFFAG 477

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL
Match: A0A061EGE7_THECC (Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_047037 PE=4 SV=1)

HSP 1 Score: 614.4 bits (1583), Expect = 1.2e-172
Identity = 294/469 (62.69%), Postives = 376/469 (80.17%), Query Frame = 1


Query: 21  NSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSY 80
           N NFLSRK+QFL  +KLCSS  HL Q+H+QI++S L  DSFL TEL+RF++LSP +NLSY
Sbjct: 3   NQNFLSRKNQFLVFLKLCSSIKHLSQVHAQILISNLHQDSFLLTELVRFSSLSPYKNLSY 62

Query: 81  ARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACA 140
             +LL   +L+ +P  WN +IRGYASSD+P++AIWV ++MR+RG++ N LT+PF++KACA
Sbjct: 63  THTLLVN-SLNSTPSTWNILIRGYASSDTPQKAIWVLKEMRKRGLQRNKLTYPFVLKACA 122

Query: 141 TLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNA 200
               L EG++ H +  K GLD DVYV N L++FYG CK++  A++VFD M  RT+VSWNA
Sbjct: 123 RGEALAEGRQVHGEIFKHGLDDDVYVENNLVHFYGCCKKIIDAKQVFDGMGERTVVSWNA 182

Query: 201 VITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERG 260
           V++ACVENFC + AI YF KM N G   DETT+V++LSACAELG+LS GR +H QVVERG
Sbjct: 183 VLSACVENFCIEDAIGYFDKMRNCGL--DETTIVIMLSACAELGSLSFGRLLHLQVVERG 242

Query: 261 MVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFT 320
           ++LN QLGTALVDMYAKSG VG A  VF+ +++++VWTWSAMILG AQHGFA EA+E+F 
Sbjct: 243 LILNCQLGTALVDMYAKSGYVGYASRVFDRMEEKNVWTWSAMILGFAQHGFAKEALEIFV 302

Query: 321 NMMSSS-VTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCR 380
            MM SS + PNYVT++GVLCACSH+GLVD GY YF+ ME V+GIKPMM+HYG+MVD L R
Sbjct: 303 KMMKSSCIRPNYVTYLGVLCACSHSGLVDDGYRYFHEMEYVHGIKPMMVHYGAMVDALGR 362

Query: 381 ASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNV 440
           A R+K+AY FIM MP+EPDPI+WRTLLSAC+  +V+    V +  RKRLLELEP+R GN+
Sbjct: 363 AGRLKDAYTFIMNMPIEPDPILWRTLLSACTIHNVNDTDGVSDRVRKRLLELEPRRSGNL 422

Query: 441 VMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
           VMVANM+AE GMW +AA+ R+ M+DG +KKMAGESC+E+ GS+ +FFSG
Sbjct: 423 VMVANMYAEAGMWDRAANVRKVMRDGRLKKMAGESCLELNGSIYQFFSG 468

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10
Match: AT2G36730.1 (AT2G36730.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 565.8 bits (1457), Expect = 2.5e-161
Identity = 280/471 (59.45%), Postives = 360/471 (76.43%), Query Frame = 1


Query: 19  NSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNL 78
           +S+S F SRKHQ L  +KLCSS  HL QIH QI +S LQNDSF+ +EL+R ++LS +++L
Sbjct: 4   SSDSCFKSRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDL 63

Query: 79  SYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKA 138
           ++AR+LL  ++   +P  WN + RGY+SSDSP E+IWV+ +M+RRGI+PN LTFPFL+KA
Sbjct: 64  AFARTLLL-HSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKA 123

Query: 139 CATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSW 198
           CA+   L  G++   + +K G D DVYV N LI+ YG+CK+ S ARKVFDEM+ R +VSW
Sbjct: 124 CASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSW 183

Query: 199 NAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVE 258
           N+++TA VEN   +   E F +M    F PDETTMVV+LSAC   GNLSLG+ VHSQV+ 
Sbjct: 184 NSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLGKLVHSQVMV 243

Query: 259 RGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIEL 318
           R + LN +LGTALVDMYAKSG +  ARLVF  +  ++VWTWSAMI+GLAQ+GFA EA++L
Sbjct: 244 RELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQL 303

Query: 319 FTNMMS-SSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVL 378
           F+ MM  SSV PNYVTF+GVLCACSH GLVD GY YF+ ME+++ IKPMMIHYG+MVD+L
Sbjct: 304 FSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDIL 363

Query: 379 CRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGG 438
            RA R+ EAY+FI +MP EPD +VWRTLLSACS    +    + E+ +KRL+ELEPKR G
Sbjct: 364 GRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSG 423

Query: 439 NVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
           N+V+VAN FAE  MW +AA+ RR MK+  MKK+AGESC+E+GGS  +FFSG
Sbjct: 424 NLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSG 471

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10
Match: AT4G21065.1 (AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 334.0 bits (855), Expect = 1.6e-91
Identity = 175/455 (38.46%), Postives = 280/455 (61.54%), Query Frame = 1


Query: 39  SSPNHLFQIHSQIIVSGLQ-NDSFLTTELLRFAALSPSRN-LSYARSLLFRYNLHFSPFP 98
           SS   L QIH+  I  G+  +D+ L   L+ +    PS   +SYA  +  +     + F 
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 99  WNCIIRGYASSDSPREAIWVFEDMRRRG-IRPNNLTFPFLIKACATLTTLQEGKKFHADA 158
           WN +IRGYA   +   A  ++ +MR  G + P+  T+PFLIKA  T+  ++ G+  H+  
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 159 IKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAI 218
           I+ G    +YV+N+L++ Y +C  ++ A KVFD+M  + LV+WN+VI    EN   ++A+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 219 EYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMY 278
             + +M + G +PD  T+V +LSACA++G L+LG+ VH  +++ G+  N+     L+D+Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 279 AKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSS-SVTPNYVTF 338
           A+ G V  A+ +F+ +  ++  +W+++I+GLA +GF  EAIELF  M S+  + P  +TF
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 339 IGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMP 398
           +G+L ACSH G+V +G+ YF  M   Y I+P + H+G MVD+L RA +VK+AYE+I  MP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 399 VEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQ 458
           ++P+ ++WRTLL AC+   V G + + E AR ++L+LEP   G+ V+++NM+A    W  
Sbjct: 388 MQPNVVIWRTLLGACT---VHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSD 447

Query: 459 AADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
               R+ M   G+KK+ G S VEVG  + +F  GD
Sbjct: 448 VQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGD 479

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10
Match: AT2G02980.1 (AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 331.3 bits (848), Expect = 1.0e-90
Identity = 175/457 (38.29%), Postives = 274/457 (59.96%), Query Frame = 1


Query: 34  LIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRN-LSYARSLLFRYNLHF 93
           LI  C+S   L QI +  I S +++ SF+  +L+ F   SP+ + +SYAR L F      
Sbjct: 35  LISKCNSLRELMQIQAYAIKSHIEDVSFVA-KLINFCTESPTESSMSYARHL-FEAMSEP 94

Query: 94  SPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFH 153
               +N + RGY+   +P E   +F ++   GI P+N TFP L+KACA    L+EG++ H
Sbjct: 95  DIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH 154

Query: 154 ADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFD 213
             ++K GLD +VYV  TLIN Y  C+ +  AR VFD +    +V +NA+IT        +
Sbjct: 155 CLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPN 214

Query: 214 KAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALV 273
           +A+  F +M     +P+E T++ +LS+CA LG+L LG+W+H    +      V++ TAL+
Sbjct: 215 EALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALI 274

Query: 274 DMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSSSVTPNYV 333
           DM+AK G +  A  +F  ++ +    WSAMI+  A HG A +++ +F  M S +V P+ +
Sbjct: 275 DMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEI 334

Query: 334 TFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMR 393
           TF+G+L ACSH G V++G  YF+ M   +GI P + HYGSMVD+L RA  +++AYEFI +
Sbjct: 335 TFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDK 394

Query: 394 MPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMW 453
           +P+ P P++WR LL+ACS+ +      + E+  +R+ EL+   GG+ V+++N++A    W
Sbjct: 395 LPISPTPMLWRILLAACSSHN---NLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKW 454

Query: 454 KQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
           +     R+ MKD    K+ G S +EV   + +FFSGD
Sbjct: 455 EYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGD 486

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10
Match: AT1G59720.1 (AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 318.9 bits (816), Expect = 5.3e-87
Identity = 186/501 (37.13%), Postives = 287/501 (57.29%), Query Frame = 1


Query: 9   VHQIFP--PNAHNSNSNFLSRKHQ-FLSLIKLCSSPNHLFQIHSQIIVSGLQNDS---FL 68
           VH + P  P A + +++     HQ   SL + CS  + L Q+H+  + +    +    FL
Sbjct: 26  VHPLSPHIPPASSPSASTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFL 85

Query: 69  TTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPRE-AIWVFEDMR 128
             ++L+ +  S   +++YA  +      H S F WN +IR  A   S +E A  ++  M 
Sbjct: 86  YGKILQLS--SSFSDVNYAFRVFDSIENH-SSFMWNTLIRACAHDVSRKEEAFMLYRKML 145

Query: 129 RRG-IRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRM 188
            RG   P+  TFPF++KACA +    EGK+ H   +K G   DVYV N LI+ YGSC  +
Sbjct: 146 ERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCL 205

Query: 189 SGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSAC 248
             ARKVFDEM  R+LVSWN++I A V    +D A++ F +M    FEPD  TM  +LSAC
Sbjct: 206 DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSAC 265

Query: 249 AELGNLSLGRWVHSQVVER---GMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVW 308
           A LG+LSLG W H+ ++ +    + ++V +  +L++MY K G +  A  VF  +++R + 
Sbjct: 266 AGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLA 325

Query: 309 TWSAMILGLAQHGFANEAIELFTNMMSS--SVTPNYVTFIGVLCACSHAGLVDKGYHYFN 368
           +W+AMILG A HG A EA+  F  M+    +V PN VTF+G+L AC+H G V+KG  YF+
Sbjct: 326 SWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFD 385

Query: 369 IMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVD 428
           +M R Y I+P + HYG +VD++ RA  + EA + +M MP++PD ++WR+LL AC  +   
Sbjct: 386 MMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK--G 445

Query: 429 GGAQVVEEARKRLL----ELEPKRG---GNVVMVANMFAEVGMWKQAADCRRAMKDGGMK 488
              ++ EE  + ++    + E   G   G  V+++ ++A    W      R+ M + G++
Sbjct: 446 ASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIR 505

Query: 489 KMAGESCVEVGGSLRKFFSGD 490
           K  G S +E+ G   +FF+GD
Sbjct: 506 KEPGCSSIEINGISHEFFAGD 520

[Close]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10
Match: AT2G33760.1 (AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 312.4 bits (799), Expect = 5.0e-85
Identity = 169/451 (37.47%), Postives = 256/451 (56.76%), Query Frame = 1


Query: 44  LFQIHSQIIVSGLQNDSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRG 103
           L Q+H+ +IV+G      L T+L+  A    +R ++Y   L     L    F +N +I+ 
Sbjct: 25  LQQVHAHLIVTGYGRSRSLLTKLITLAC--SARAIAYTHLLFLSVPLP-DDFLFNSVIKS 84

Query: 104 YASSDSPREAIWVFEDMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLD 163
            +    P   +  +  M    + P+N TF  +IK+CA L+ L+ GK  H  A+  G  LD
Sbjct: 85  TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 144

Query: 164 VYVRNTLINFYGSCKRMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGN 223
            YV+  L+ FY  C  M GAR+VFD M  +++V+WN++++   +N   D+AI+ F +M  
Sbjct: 145 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 204

Query: 224 HGFEPDETTMVVILSACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGC 283
            GFEPD  T V +LSACA+ G +SLG WVH  ++  G+ LNV+LGTAL+++Y++ GDVG 
Sbjct: 205 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 264

Query: 284 ARLVFNCLKQRSVWTWSAMILGLAQHGFANEAIELFTNMMSS-SVTPNYVTFIGVLCACS 343
           AR VF+ +K+ +V  W+AMI     HG+  +A+ELF  M       PN VTF+ VL AC+
Sbjct: 265 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 324

Query: 344 HAGLVDKGYHYFNIMERVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPV---EPDP 403
           HAGLV++G   +  M + Y + P + H+  MVD+L RA  + EAY+FI ++        P
Sbjct: 325 HAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP 384

Query: 404 IVWRTLLSACSA-RDVDGGAQVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADC 463
            +W  +L AC   R+ D G ++     KRL+ LEP   G+ VM++N++A  G   + +  
Sbjct: 385 ALWTAMLGACKMHRNYDLGVEIA----KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHI 444

Query: 464 RRAMKDGGMKKMAGESCVEVGGSLRKFFSGD 490
           R  M    ++K  G S +EV      F  GD
Sbjct: 445 RDGMMRNNLRKQVGYSVIEVENKTYMFSMGD 468

[Close]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr
Match: gi|449461643|ref|XP_004148551.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cucumis sativus])

HSP 1 Score: 847.4 bits (2188), Expect = 1.2e-242
Identity = 416/490 (84.90%), Postives = 444/490 (90.61%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNAHNSNSN--FLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQN 60
           MVRL ISAVHQ FP N HN +S   FLS KHQ LSL+  CSS NHLF+IH+QI+VSGLQN
Sbjct: 1   MVRLWISAVHQFFPINVHNYSSKPKFLSTKHQLLSLLNHCSSTNHLFEIHAQILVSGLQN 60

Query: 61  DSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFE 120
           DSF TTELLR AALSPSRNLSY  SLLF  + H +  PWN IIRGY+SSDSP+EAI +F 
Sbjct: 61  DSFFTTELLRVAALSPSRNLSYGCSLLFHCHFHSATMPWNFIIRGYSSSDSPQEAISLFG 120

Query: 121 DMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCK 180
           +MRRRG+RPNNLTFPFL+KACATL TLQEGK+FHA AIKCGLDLDVYVRNTLI FYGSCK
Sbjct: 121 EMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCGLDLDVYVRNTLIYFYGSCK 180

Query: 181 RMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILS 240
           RMSGARKVFDEM+ RTLVSWNAVITACVENFCFD+AI+YFLKMGNHGFEPDETTMVVILS
Sbjct: 181 RMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFLKMGNHGFEPDETTMVVILS 240

Query: 241 ACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWT 300
           ACAELGNLSLGRWVHSQVV RGMVLNVQLGTA VDMYAKSGDVGCAR VFNCLKQ+SVWT
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAKSGDVGCARHVFNCLKQKSVWT 300

Query: 301 WSAMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIME 360
           WSAMILGLAQHGFANEAIELFTNMMSS + PN+VTFIGVLCACSHAGLVDK YHYFN+ME
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMMSSPIVPNHVTFIGVLCACSHAGLVDKSYHYFNLME 360

Query: 361 RVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGA 420
           RVYGIKPMMIHYGSMVDVL RA +VKEAYE IM MPVEPDPIVWRTLLSACS RDV+GGA
Sbjct: 361 RVYGIKPMMIHYGSMVDVLGRAGQVKEAYELIMSMPVEPDPIVWRTLLSACSGRDVNGGA 420

Query: 421 QVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEV 480
           +V EEARKRLLELEPKRGGNVVMVAN FAE+GMWKQAAD RR MKD G+KKMAGESC+E+
Sbjct: 421 EVAEEARKRLLELEPKRGGNVVMVANKFAELGMWKQAADYRRTMKDRGIKKMAGESCIEL 480

Query: 481 GGSLRKFFSG 489
           GGSLRKFFSG
Sbjct: 481 GGSLRKFFSG 490

[Close]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr
Match: gi|659094369|ref|XP_008448023.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cucumis melo])

HSP 1 Score: 842.8 bits (2176), Expect = 3.0e-241
Identity = 413/490 (84.29%), Postives = 442/490 (90.20%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNAHN--SNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQN 60
           MVRL ISAVHQ FP NAH+  S   FLS KHQFLSL+K CSS NHLF+IH+QI+VSG QN
Sbjct: 1   MVRLWISAVHQFFPINAHSYISKPKFLSTKHQFLSLLKHCSSTNHLFEIHAQILVSGRQN 60

Query: 61  DSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFE 120
           DSFLTTELLR AALSPSRNLSY  SLLF  + H +  PWN IIRGY+SSDSPREAI +F 
Sbjct: 61  DSFLTTELLRVAALSPSRNLSYGCSLLFHCHFHSATLPWNLIIRGYSSSDSPREAISLFG 120

Query: 121 DMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCK 180
           +MRRRG+ PNNLTFPFL+KACATL TLQEGK+FHA  IKCGLDLDVYVRNTLI+FYGSCK
Sbjct: 121 EMRRRGVIPNNLTFPFLLKACATLATLQEGKQFHAIVIKCGLDLDVYVRNTLIHFYGSCK 180

Query: 181 RMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILS 240
           RMSGARKVFDEM+ RTLVSWNAVITACVENF FD+AI+YFLKMGNHGFEPDETTMVVILS
Sbjct: 181 RMSGARKVFDEMTERTLVSWNAVITACVENFFFDEAIDYFLKMGNHGFEPDETTMVVILS 240

Query: 241 ACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWT 300
           ACAELGNLSLGRWVHSQVV RGMVLN+QLGTA VDMYAKSGDVGCAR VFNCLKQ+SVWT
Sbjct: 241 ACAELGNLSLGRWVHSQVVGRGMVLNIQLGTAFVDMYAKSGDVGCARRVFNCLKQKSVWT 300

Query: 301 WSAMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIME 360
           WSAMILGLAQHGFANEAIELFTNM SS + PNYVTF+GVLCACSHAGLVDK YHYFN+ME
Sbjct: 301 WSAMILGLAQHGFANEAIELFTNMKSSPIVPNYVTFVGVLCACSHAGLVDKSYHYFNVME 360

Query: 361 RVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGA 420
           RVYGIKPMMIHYG MVDVL RA +VKEAYE IM MPVEPDP+VWRTLLSACS RDV+GGA
Sbjct: 361 RVYGIKPMMIHYGLMVDVLGRAGQVKEAYELIMSMPVEPDPVVWRTLLSACSGRDVNGGA 420

Query: 421 QVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEV 480
           +V EEARKRLLELEPKRGGNVVMVAN FAEVGMWKQAAD RR MKD G+KKMAGESC+E+
Sbjct: 421 EVAEEARKRLLELEPKRGGNVVMVANKFAEVGMWKQAADYRRTMKDRGIKKMAGESCIEL 480

Query: 481 GGSLRKFFSG 489
           GGSLRKFFSG
Sbjct: 481 GGSLRKFFSG 490

[Close]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr
Match: gi|1000941847|ref|XP_015582500.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Ricinus communis])

HSP 1 Score: 664.8 bits (1714), Expect = 1.1e-187
Identity = 319/489 (65.24%), Postives = 392/489 (80.16%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNAHNSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDS 60
           MVR  I     IFPP   +SNSNFLS KHQ LSL+KLCSS  HL+QIHSQI VSGLQ D+
Sbjct: 1   MVRFPIPTATPIFPPEPISSNSNFLSIKHQCLSLLKLCSSIKHLYQIHSQIQVSGLQGDT 60

Query: 61  FLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDM 120
           FL T+L++F++LSPS++LSYA+S+L  +++H  P PWN +IRGYA S++P++A++V+ +M
Sbjct: 61  FLVTQLIKFSSLSPSKDLSYAQSIL-DHSVHPVPLPWNILIRGYADSNTPKDALFVYRNM 120

Query: 121 RRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRM 180
           R  GIRPN+LTFPFL+KACA     +EGK+ H + IK GLD DVYV N L+NFYGSCK++
Sbjct: 121 RNEGIRPNSLTFPFLLKACAACFATKEGKQVHVEVIKYGLDCDVYVNNNLVNFYGSCKKI 180

Query: 181 SGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSAC 240
             A KVFDEM  RT+VSWNAVIT+CVE+    +AI YFLKM + GFEPD TTMV++L  C
Sbjct: 181 LDACKVFDEMPERTVVSWNAVITSCVESLKLGEAIRYFLKMRDFGFEPDGTTMVLMLVIC 240

Query: 241 AELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWS 300
           AE+GNL LGRW+HSQV+ERG+VLN QLGTALVDMYAKSG VG A+LVF+ +K+++VWTWS
Sbjct: 241 AEMGNLGLGRWIHSQVIERGLVLNYQLGTALVDMYAKSGAVGYAKLVFDRMKEKNVWTWS 300

Query: 301 AMILGLAQHGFANEAIELFTNMMSSS-VTPNYVTFIGVLCACSHAGLVDKGYHYFNIMER 360
           AMILGLAQHGFA E +ELF +MM SS + PNYVTF+GVLCACSHAGLV  G+ YF+ M  
Sbjct: 301 AMILGLAQHGFAKEGLELFLDMMRSSLIHPNYVTFLGVLCACSHAGLVSDGFRYFHEMGH 360

Query: 361 VYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQ 420
            YGIKPMM+HYG+MVD+L RA  +KEAY FI +MP +PDPIVWRTLLSACS  DV     
Sbjct: 361 TYGIKPMMVHYGAMVDILGRAGLLKEAYNFITKMPFQPDPIVWRTLLSACSIHDVKDSTG 420

Query: 421 VVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVG 480
           V  + RKRLLELEP+R GN VMVANM+A+ GMW++AA  RR M+DGG+KK AGESCVE+ 
Sbjct: 421 VAYKVRKRLLELEPRRSGNFVMVANMYADAGMWEKAAKVRRVMRDGGLKKKAGESCVELS 480

Query: 481 GSLRKFFSG 489
           GS+ +FFSG
Sbjct: 481 GSIHRFFSG 488

[Close]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr
Match: gi|1009125132|ref|XP_015879446.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Ziziphus jujuba])

HSP 1 Score: 664.5 bits (1713), Expect = 1.5e-187
Identity = 319/490 (65.10%), Postives = 391/490 (79.80%), Query Frame = 1


Query: 1   MVRLRISAVHQIFPPNA--HNSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQN 60
           MVRL+    +++F P    H  +S+F+S+K Q LSL K+CSS   L QIH+Q+ +SGLQ 
Sbjct: 1   MVRLQTQTANRVFAPKTYHHPDSSDFVSKKQQCLSLFKICSSIKQLSQIHAQLHLSGLQG 60

Query: 61  DSFLTTELLRFAALSPSRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFE 120
           D+FL T+L+RF ALSPS++L++AR++L R + H  P  WN +IRGYASSDSP EAIWVF 
Sbjct: 61  DTFLLTQLVRFCALSPSKDLNHARTILHRSD-HSPPSSWNILIRGYASSDSPTEAIWVFR 120

Query: 121 DMRRRGIRPNNLTFPFLIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCK 180
           +MR RGIRPN LTFPFL+KACAT+  L+ G++ HAD  K GLD DVYV+N LI+FYG CK
Sbjct: 121 EMRCRGIRPNKLTFPFLLKACATIMALKVGRQVHADVFKRGLDGDVYVQNNLIHFYGCCK 180

Query: 181 RMSGARKVFDEMSVRTLVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILS 240
           ++S A+K+FD MSVRTLVSWN++ITACVEN CFD  I YFL+M N GF+PDETTMVV+L+
Sbjct: 181 KISNAQKLFDAMSVRTLVSWNSIITACVENSCFDNGIGYFLRMRNCGFQPDETTMVVVLN 240

Query: 241 ACAELGNLSLGRWVHSQVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWT 300
           ACAELGNLSLGRWVHSQ ++R + LN QLGT+LVDMYAKSG +  A  VF+ L +R+VWT
Sbjct: 241 ACAELGNLSLGRWVHSQTIQRELGLNCQLGTSLVDMYAKSGALDYATKVFDSLGERNVWT 300

Query: 301 WSAMILGLAQHGFANEAIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIME 360
           WSAMILGLAQHGF NE +ELF  MM SS+ PNYVTF+GVLCACSHAGLV  GY YF  ME
Sbjct: 301 WSAMILGLAQHGFGNEGLELFAKMMKSSICPNYVTFLGVLCACSHAGLVQDGYQYFYDME 360

Query: 361 RVYGIKPMMIHYGSMVDVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGA 420
            V+GIKPMMIHYG+MVD+L RA R+ EAY FI  MP EPDPI+WRTLLS C   DV    
Sbjct: 361 HVHGIKPMMIHYGAMVDILARAGRLSEAYAFINNMPFEPDPIIWRTLLSVCCNCDVKDKE 420

Query: 421 QVVEEARKRLLELEPKRGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEV 480
            + ++ RKRLL LEP+RGGN+VMVA M+AEVGMW++AA+ RR M+ GG+KK AGESC+E+
Sbjct: 421 GIGDKVRKRLLNLEPRRGGNLVMVAKMYAEVGMWEKAANVRRFMRSGGLKKSAGESCIEL 480

Query: 481 GGSLRKFFSG 489
           GGS+R+FFSG
Sbjct: 481 GGSIRRFFSG 489

[Close]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr
Match: gi|657975030|ref|XP_008379357.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Malus domestica])

HSP 1 Score: 656.8 bits (1693), Expect = 3.1e-185
Identity = 313/474 (66.03%), Postives = 382/474 (80.59%), Query Frame = 1


Query: 15  PNAHNSNSNFLSRKHQFLSLIKLCSSPNHLFQIHSQIIVSGLQNDSFLTTELLRFAALSP 74
           P A+N NSNF S+K Q L L+  CS+  HL QIH+QI VSG QND FL T+L+RF A SP
Sbjct: 7   PTANNCNSNFGSKKEQCLHLLSRCSTFKHLSQIHAQIQVSGFQNDHFLLTQLIRFCASSP 66

Query: 75  SRNLSYARSLLFRYNLHFSPFPWNCIIRGYASSDSPREAIWVFEDMRRRGIRPNNLTFPF 134
           ++N +YAR+LL  ++    P  WN +IRG ASSDS REAIWVF  M  RG+RPN LTFPF
Sbjct: 67  AKNFAYARNLL-DHSESSPPSSWNFLIRGCASSDSXREAIWVFRAMLARGVRPNQLTFPF 126

Query: 135 LIKACATLTTLQEGKKFHADAIKCGLDLDVYVRNTLINFYGSCKRMSGARKVFDEMSVRT 194
           LIK+CA+   L+EG++ H   +KCGLD DVYV+N L++FYG CK++  A KVFDEMS R+
Sbjct: 127 LIKSCASAAALKEGRQVHVGVVKCGLDCDVYVQNNLVHFYGECKKIKDAXKVFDEMSERS 186

Query: 195 LVSWNAVITACVENFCFDKAIEYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHS 254
           +VSWNA+ITACVENF  D+ IEYF+KM   GFEPDETTMVV+L+A +ELGNLS+GRWVHS
Sbjct: 187 VVSWNAIITACVENFWLDEGIEYFMKMRGCGFEPDETTMVVVLNASSELGNLSIGRWVHS 246

Query: 255 QVVERGMVLNVQLGTALVDMYAKSGDVGCARLVFNCLKQRSVWTWSAMILGLAQHGFANE 314
           QV+ERG+ LN QLGTALVDMYAKSGD+G AR+VFN ++ R+VWT SAMILGLAQHGFA E
Sbjct: 247 QVIERGLALNCQLGTALVDMYAKSGDLGYARIVFNKMETRNVWTXSAMILGLAQHGFAKE 306

Query: 315 AIELFTNMMSSSVTPNYVTFIGVLCACSHAGLVDKGYHYFNIMERVYGIKPMMIHYGSMV 374
           A+E+F  M+SSSV PNYVTF+GVLCACSHAGLV+ GY YFN ME V+GIKPMM+HYG+MV
Sbjct: 307 ALEIFRKMLSSSVRPNYVTFLGVLCACSHAGLVEDGYRYFNDMEHVHGIKPMMVHYGAMV 366

Query: 375 DVLCRASRVKEAYEFIMRMPVEPDPIVWRTLLSACSARDVDGGAQVVEEARKRLLELEPK 434
           D+L RA R+ EAY F+  MP++PDPIVWRTLLSAC+         V  + R++LLELEPK
Sbjct: 367 DILGRAGRLNEAYSFMXSMPLDPDPIVWRTLLSACTTHSAKDNEGVGNKVREKLLELEPK 426

Query: 435 RGGNVVMVANMFAEVGMWKQAADCRRAMKDGGMKKMAGESCVEVGGSLRKFFSG 489
           RGGN+VMVANM+AEVGMW++AA+ R+ MK+  MKKMAGESC+E+GGS+ KFFSG
Sbjct: 427 RGGNLVMVANMYAEVGMWEKAANLRKVMKERRMKKMAGESCIELGGSVHKFFSG 479

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g01560.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP188_ARATH	4.4e-160	59.45	Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN...	[more]
PP330_ARATH	2.8e-90	38.46	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN...	[more]
PP145_ARATH	1.8e-89	38.29	Pentatricopeptide repeat-containing protein At2g02980, chloroplastic OS=Arabidop...	[more]
PPR85_ARATH	9.5e-86	37.13	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
PP182_ARATH	8.9e-84	37.47	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG04g01560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K153_CUCSA	8.5e-243	84.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G007910 PE=4 SV=1	[more]
M5WZ10_PRUPE	2.2e-182	64.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004522mg PE=4 SV=1	[more]
B9T0U0_RICCO	8.7e-179	65.72	Cell division protein ftsH, putative OS=Ricinus communis GN=RCOM_0340700 PE=3 SV...	[more]
A0A0S3RS08_PHAAN	1.7e-174	64.04	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G050100 PE=...	[more]
A0A061EGE7_THECC	1.2e-172	62.69	Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_047...	[more]

BLAST of Cp4.1LG04g01560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36730.1	2.5e-161	59.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	1.6e-91	38.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G02980.1	1.0e-90	38.29	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G59720.1	5.3e-87	37.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	5.0e-85	37.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Cp4.1LG04g01560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461643\|ref\|XP_004148551.1\|	1.2e-242	84.90	PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cuc...	[more]
gi\|659094369\|ref\|XP_008448023.1\|	3.0e-241	84.29	PREDICTED: pentatricopeptide repeat-containing protein At2g36730 isoform X1 [Cuc...	[more]
gi\|1000941847\|ref\|XP_015582500.1\|	1.1e-187	65.24	PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Ricinus commun...	[more]
gi\|1009125132\|ref\|XP_015879446.1\|	1.5e-187	65.10	PREDICTED: pentatricopeptide repeat-containing protein At2g36730-like [Ziziphus ...	[more]
gi\|657975030\|ref\|XP_008379357.1\|	3.1e-185	66.03	PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Malus domestic...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g01560	Cp4.1LG04g01560	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g01560.1:cds:002	Cp4.1LG04g01560.1:cds:002	CDS
Cp4.1LG04g01560.1:cds:001	Cp4.1LG04g01560.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g01560.1	Cp4.1LG04g01560.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 168..191 score: 0.0035coord: 298..325 score: 7.2E-5coord: 269..295 score: 0.88coord: 369..394 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 97..140 score: 1.3E-10coord: 195..241 score: 9.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 298..330 score: 6.3E-5coord: 196..230 score: 8.5E-7coord: 97..128 score: 1.3E-6coord: 168..191 score: 4.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 398..431 score: 5.064coord: 194..228 score: 10.139coord: 163..193 score: 8.035coord: 93..127 score: 12.386coord: 366..396 score: 7.081coord: 330..365 score: 6.467coord: 229..263 score: 7.87coord: 264..294 score: 6.018coord: 128..162 score: 5.952coord: 295..329 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 17..476 score: 8.2E
None	No IPR available	PANTHER	PTHR24015:SF36	SUBFAMILY NOT NAMED	coord: 17..476 score: 8.2E