Cp4.1LG03g06130.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g06130.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Basic helix-loop-helix transcription factor
Location	Cp4.1LG03 : 4269812 .. 4270815 (-)
Sequence length	696

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGCTAGCCTAGCCCTGAAAGCTTTGAGAAACTCAATCATGTCAGAGTTTAGGCAAGACCTGCATCAAGAAAGGGGCTTGAATATAGAAGTCCTAACCCAGTTCTCTAATATGACAGAGAGCATGTTAGAGGGTGGCTTGGAGAACTTATTGGGCTACCATTTCCAGTTACCAGAAAGTACAACTCCCAGCTCACTATCCAATTTTCCTTGTGTTACCTTACTGAAATGTCAGAACGAGTTTCCGATAACTCGAACCGGTCTACTGGTAGATAACGCTCAAGAAACCATGAAGAGAAAAGCAAAACAAGAATCGGAAAGCAACTCAGGAGCGCTTTGTGCAGCCAGGCCTTTGAAAGCAAGTGTCAACTCTTCAACAAATTGTTTCAGTTGTTTTGAACTTTTAGTTTTCTCATTTCTTTGTTTACTCAGAACTTGGGAGGAGGAAGGAAAAGAAGGAACTGTGAGAAAGAACAGGAAAAGCCTGCAGAAGTAGTTCATGTTAGAGCAAAACGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTATATTGCTGAATTATAAAATGTTTATTCCAAAACACAATTTTTTTAGAGATTGATTTCTTGTTCTTCATATTTCAGGTGAGAAGAGAGAAAATCAACAACAAATTAAAATGCTTGCAAAACCTTATTCCAGGATGTCACAAGGTAATTCTTTTTTCTTGTCCTGTTTACCAAAACGTTGGAACCTCAATTTCAAACAAAATCTCCATATTATTTTGCAGTCAATGGGTATGGCAATGGTGTTGGATGAGACAATCAATTATGTTCATTCACTACAGAATCAGGTTGAGGTGAGGAACATGGTGAACTTTTCGTAAGTATTAATAATGTTTTACTCTAATAGCACTGAAATATTTACTTTGTTCTTGAATTCAGTTTCTTTCAATGGAGCTTGCAGCTGCATGTTCCTCTTTAGGCATAAATTTTGGCACGGGAGCTATCAGAAAAGCTTAG

mRNA sequence

CTAGCTAGCCTAGCCCTGAAAGCTTTGAGAAACTCAATCATGTCAGAGTTTAGGCAAGACCTGCATCAAGAAAGGGGCTTGAATATAGAAGTCCTAACCCAGTTCTCTAATATGACAGAGAGCATGTTAGAGGGTGGCTTGGAGAACTTATTGGGCTACCATTTCCAGTTACCAGAAAGTACAACTCCCAGCTCACTATCCAATTTTCCTTGTGTTACCTTACTGAAATGTCAGAACGAGTTTCCGATAACTCGAACCGGTCTACTGGTAGATAACGCTCAAGAAACCATGAAGAGAAAAGCAAAACAAGAATCGGAAAGCAACTCAGGAGCGCTTTGTGCAGCCAGGCCTTTGAAAGCAAGTAACTTGGGAGGAGGAAGGAAAAGAAGGAACTGTGAGAAAGAACAGGAAAAGCCTGCAGAAGTAGTTCATGTTAGAGCAAAACGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTGAGAAGAGAGAAAATCAACAACAAATTAAAATGCTTGCAAAACCTTATTCCAGGATGTCACAAGTCAATGGGTATGGCAATGGTGTTGGATGAGACAATCAATTATGTTCATTCACTACAGAATCAGGTTGAGTTTCTTTCAATGGAGCTTGCAGCTGCATGTTCCTCTTTAGGCATAAATTTTGGCACGGGAGCTATCAGAAAAGCTTAG

Coding sequence (CDS)

CTAGCTAGCCTAGCCCTGAAAGCTTTGAGAAACTCAATCATGTCAGAGTTTAGGCAAGACCTGCATCAAGAAAGGGGCTTGAATATAGAAGTCCTAACCCAGTTCTCTAATATGACAGAGAGCATGTTAGAGGGTGGCTTGGAGAACTTATTGGGCTACCATTTCCAGTTACCAGAAAGTACAACTCCCAGCTCACTATCCAATTTTCCTTGTGTTACCTTACTGAAATGTCAGAACGAGTTTCCGATAACTCGAACCGGTCTACTGGTAGATAACGCTCAAGAAACCATGAAGAGAAAAGCAAAACAAGAATCGGAAAGCAACTCAGGAGCGCTTTGTGCAGCCAGGCCTTTGAAAGCAAGTAACTTGGGAGGAGGAAGGAAAAGAAGGAACTGTGAGAAAGAACAGGAAAAGCCTGCAGAAGTAGTTCATGTTAGAGCAAAACGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAAAGGGTGAGAAGAGAGAAAATCAACAACAAATTAAAATGCTTGCAAAACCTTATTCCAGGATGTCACAAGTCAATGGGTATGGCAATGGTGTTGGATGAGACAATCAATTATGTTCATTCACTACAGAATCAGGTTGAGTTTCTTTCAATGGAGCTTGCAGCTGCATGTTCCTCTTTAGGCATAAATTTTGGCACGGGAGCTATCAGAAAAGCTTAG

Protein sequence

LASLALKALRNSIMSEFRQDLHQERGLNIEVLTQFSNMTESMLEGGLENLLGYHFQLPESTTPSSLSNFPCVTLLKCQNEFPITRTGLLVDNAQETMKRKAKQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA

Homology

[Close]

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.2e-31
Identity = 82/187 (43.85%), Postives = 111/187 (59.36%), Query Frame = 1


Query: 51  LGYHFQLPESTTPSSLSN-------FPC--VTLLKCQNEFPITRTGLLVDNAQETMKRKA 110
           L +H Q P+     SL N       FP       +  ++F   +   L++    +    +
Sbjct: 44  LFFHNQFPDHFPGKSLENNFHQGIFFPSNIQNNEESSSQFDTKKRKSLMEAVSTSENSVS 103

Query: 111 KQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAER 170
            Q   ++S  +     +   N    R +R+  +E+EK  EVVHVRA+RGQATDSHS+AER
Sbjct: 104 DQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAER 163

Query: 171 VRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGI 229
           VRR KIN +LKCLQ+++PGC+K+MGMA +LDE INYV SLQNQVEFLSM+L AA S    
Sbjct: 164 VRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDF 223

[Close]

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 84/158 (53.16%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 79  NEFPITRTGLLVDN--AQETMKRKAKQE--SESNSGALCAARPLKASNLG----GGRKRR 138
           N F  T + L  D+    ET KRKA     S S +  +     + A+  G    G R ++
Sbjct: 71  NNFSSTSSFLHSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATETGSLRRGKRLKK 130

Query: 139 NCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMV 198
             E+E EK  EVVHVRA+RGQATDSHSLAERVRR KIN +L+CLQ+++PGC+K+MGMA +
Sbjct: 131 KKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATM 190

Query: 199 LDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAI 229
           LDE INYV SLQNQVEFLSM+L AA S    N  T A+
Sbjct: 191 LDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAV 228

[Close]

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1


Query: 124 GGGRKRRNCEKEQ-------EKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQN 183
           G  R+R+  E+E+       +KP +VVHVRAKRGQATDSHSLAERVRREKIN +LKCLQ+
Sbjct: 76  GSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQD 135

Query: 184 LIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGIN 223
           L+PGC+K+MGMA++LD  I+YV SLQNQ+EFLSM+L+AA +   +N
Sbjct: 136 LVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLN 181

[Close]

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.3e-24
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 90  VDNAQETMKRKAKQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKR 149
           + N  +T  RKA+  + S  G             G   K++    ++E P + +HVRA+R
Sbjct: 92  ITNTGKTRGRKARNSNNSKEGVE-----------GRKSKKQKRGSKEEPPTDYIHVRARR 151

Query: 150 GQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLS 209
           GQATDSHSLAERVRREKI+ +++ LQNL+PGC K  G A++LDE INYV +LQ QVEFLS
Sbjct: 152 GQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLS 211

Query: 210 MELAAACSSLGINFGT 226
           M+L  + S +  +FG+
Sbjct: 212 MKL-TSISPVVYDFGS 215

[Close]

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 98  KRKAKQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHS 157
           K++    SES +G        + S+ GGG K    + + E P + +HVRA+RGQATD HS
Sbjct: 106 KKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHS 165

Query: 158 LAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMEL 213
           LAER RREKI+ K+  LQ++IPGC+K +G A+VLDE INY+ SLQ QVEFLSM+L
Sbjct: 166 LAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKL 220

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL
Match: A0A0A0LCH4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282490 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.0e-76
Identity = 160/217 (73.73%), Postives = 173/217 (79.72%), Query Frame = 1


Query: 28  NIEVLTQFSNMTESMLE------GGLENLLGYHFQLPESTTPSSLSNFPCVTLLKCQNEF 87
           N+EV+ QFSN  ES LE        +EN  GYHFQLPE+T+PSSLSNF  V LLKCQ EF
Sbjct: 4   NMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPENTSPSSLSNFSSVALLKCQKEF 63

Query: 88  P-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA------RPLKASNLGGGRKRRNCEK 147
           P ITR+ L VD+  ETMKRK KQ SE NSG LCAA          + N+ GGRKRRN EK
Sbjct: 64  PVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGNDSSNARSSKNMEGGRKRRNYEK 123

Query: 148 EQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDET 207
           EQEKP EVVHVRAKRGQATDSHSLAERVRREKIN+KLKCLQN+IPGCHKSMGMAMVLDET
Sbjct: 124 EQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLKCLQNIIPGCHKSMGMAMVLDET 183

Query: 208 INYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           INYV+SLQNQVEFLSMELAAACS+LGINFG G  RKA
Sbjct: 184 INYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKA 220

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL
Match: A0A061EIH6_THECC (Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_019445 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.8e-41
Identity = 107/225 (47.56%), Postives = 142/225 (63.11%), Query Frame = 1


Query: 24  ERGLNIEVLTQFSNMTESMLEG------GLENLLGYHFQLPESTTPSSLSNFPCVTLLKC 83
           E  +++E+  Q S +  ++LE        LE LL +  QLPE +   +  N     L   
Sbjct: 3   EMDISMEMTKQSSELNSTLLENFSIADFSLETLLAH--QLPEYSASCTHDNLSTTVLAGS 62

Query: 84  QNEFPITRTGLLVDNAQ-ETMKRKAKQESESNSGALCAA----------RPLKASNLGGG 143
               P  RT  + ++   E+ KRKA ++S SN  ++  A             K + LG G
Sbjct: 63  LTAIPTARTVTVDEDVFIESKKRKAMEQSTSNYQSISPAVSTTEIGGNTSTRKRNRLGKG 122

Query: 144 RKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMG 203
           +K ++ EK+ EK  EV+HVRA+RGQATDSHSLAERVRREKIN K++CLQ+L+PGCHK+MG
Sbjct: 123 KKGKSNEKQPEKAEEVIHVRARRGQATDSHSLAERVRREKINEKMRCLQDLVPGCHKTMG 182

Query: 204 MAMVLDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           MA++LDE INYVHSLQNQVEFLSMELAAA S+  +N  T  I+KA
Sbjct: 183 MAVMLDEIINYVHSLQNQVEFLSMELAAASSAYDLNLETECIKKA 225

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL
Match: U5GG63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-38
Identity = 106/222 (47.75%), Postives = 139/222 (62.61%), Query Frame = 1


Query: 19  QDLHQERGLNIEVLTQFSNMTESMLEG------GLENLLGYHFQLPESTTPSSLSNFPCV 78
           Q L +   +N+E+L     M  S+LE         ++LL    Q PE T     +N    
Sbjct: 15  QPLTEMMDMNMEMLKHLPEMNPSILESFSITDFSADSLLAR--QQPEFTATYDHNNLSST 74

Query: 79  TLLKCQNEFPITRTGLLVDN-AQETMKRKAKQESESN--SGALCAARPLKASNLGGGRKR 138
                 +   +  T  L  N + ++ KRK+ ++S S+  S         K +NLGG +K 
Sbjct: 75  FHPDILSTATVVHTVTLNQNDSHDSKKRKSMEQSTSSYISPTASTNETKKKNNLGGSKKG 134

Query: 139 RNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAM 198
            N EKE +K  EV+HVRAKRGQATDSHS+AERVRREKINNKL+CLQ+L+PGCH+SMGMA+
Sbjct: 135 ENKEKEGDKAEEVIHVRAKRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHRSMGMAV 194

Query: 199 VLDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           +L+E INYVHSLQNQVEFLSMELAAA SS  +N  T + ++A
Sbjct: 195 MLEEIINYVHSLQNQVEFLSMELAAASSSNDLNNLTESSKRA 234

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL
Match: B9T6S5_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_0016380 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.3e-36
Identity = 93/160 (58.13%), Postives = 116/160 (72.50%), Query Frame = 1


Query: 82  PITRTGLLVDNAQ-----ETMKRKAKQESESNSGALC-----AARPLKASNLGGGRKRRN 141
           PI  T   VD++Q     ++ KRK + +S S+S  +           + +NLG  +K +N
Sbjct: 79  PIVHT---VDSSQYVIFRDSKKRKVEAQSTSSSKNVSPTTSTTTNTKQKNNLGRDKKGKN 138

Query: 142 CEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVL 201
            EKE EK  EV+HVRAKRGQATDSHS+AERVRREKINNKL+CLQ+L+PGCHKSMGMA++L
Sbjct: 139 KEKEVEKAEEVIHVRAKRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHKSMGMAVML 198

Query: 202 DETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           +E INYVHSLQNQVEFLSMELAAA  S  +N  T + +KA
Sbjct: 199 EEIINYVHSLQNQVEFLSMELAAASCSYDLNLETESSKKA 235

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL
Match: A0A067EV90_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017964mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 102/249 (40.96%), Postives = 141/249 (56.63%), Query Frame = 1


Query: 14  MSEFRQDLHQ--------ERGLNIEVLTQFSNMTESMLEGGLENLLGYHFQLPESTTPSS 73
           M++FR++           E G+N+E++  F+ +  SMLE         +F  P  +  + 
Sbjct: 1   MADFRENTQSLRASQAFTELGVNMEMVKHFAELKPSMLE---------YFNTPNFSLATP 60

Query: 74  LSNFPCVTLLKCQ--NEFPITRTGLLV------------DNAQETMKRKAKQESESNSGA 133
           L++     L  C   N F   +T   +            D   E+ +R+  ++S S S  
Sbjct: 61  LAHQQPEFLAGCSYNNSFSNFQTDSRIVVPRVRTVRGNEDVLYESSRREVTEQSTSISKT 120

Query: 134 LCAARPL----------KASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAER 193
           +C++             K      G+K  + EKE+  P  ++HVRAKRGQATDSHS+AER
Sbjct: 121 MCSSASTSETQGDTYKNKKIRSRRGKKVSSNEKEEGNPERIIHVRAKRGQATDSHSIAER 180

Query: 194 VRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGI 231
           VRREKIN K++CLQ+L+PGCHK MGMA +L+E INYVHSLQNQVEFLSMELAAACSS  +
Sbjct: 181 VRREKINKKMRCLQDLVPGCHKDMGMAGMLEEIINYVHSLQNQVEFLSMELAAACSSNDL 240

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10
Match: AT1G73830.1 (AT1G73830.1 BR enhanced expression 3)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-32
Identity = 82/187 (43.85%), Postives = 111/187 (59.36%), Query Frame = 1


Query: 51  LGYHFQLPESTTPSSLSN-------FPC--VTLLKCQNEFPITRTGLLVDNAQETMKRKA 110
           L +H Q P+     SL N       FP       +  ++F   +   L++    +    +
Sbjct: 44  LFFHNQFPDHFPGKSLENNFHQGIFFPSNIQNNEESSSQFDTKKRKSLMEAVSTSENSVS 103

Query: 111 KQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAER 170
            Q   ++S  +     +   N    R +R+  +E+EK  EVVHVRA+RGQATDSHS+AER
Sbjct: 104 DQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAER 163

Query: 171 VRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGI 229
           VRR KIN +LKCLQ+++PGC+K+MGMA +LDE INYV SLQNQVEFLSM+L AA S    
Sbjct: 164 VRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDF 223

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10
Match: AT1G18400.1 (AT1G18400.1 BR enhanced expression 1)

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-32
Identity = 84/158 (53.16%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 79  NEFPITRTGLLVDN--AQETMKRKAKQE--SESNSGALCAARPLKASNLG----GGRKRR 138
           N F  T + L  D+    ET KRKA     S S +  +     + A+  G    G R ++
Sbjct: 71  NNFSSTSSFLHSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATETGSLRRGKRLKK 130

Query: 139 NCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMV 198
             E+E EK  EVVHVRA+RGQATDSHSLAERVRR KIN +L+CLQ+++PGC+K+MGMA +
Sbjct: 131 KKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATM 190

Query: 199 LDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAI 229
           LDE INYV SLQNQVEFLSM+L AA S    N  T A+
Sbjct: 191 LDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAV 228

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10
Match: AT1G25330.1 (AT1G25330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 9.7e-31
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1


Query: 124 GGGRKRRNCEKEQ-------EKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQN 183
           G  R+R+  E+E+       +KP +VVHVRAKRGQATDSHSLAERVRREKIN +LKCLQ+
Sbjct: 76  GSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQD 135

Query: 184 LIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGIN 223
           L+PGC+K+MGMA++LD  I+YV SLQNQ+EFLSM+L+AA +   +N
Sbjct: 136 LVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLN 181

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10
Match: AT5G50915.1 (AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-25
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 90  VDNAQETMKRKAKQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKR 149
           + N  +T  RKA+  + S  G             G   K++    ++E P + +HVRA+R
Sbjct: 92  ITNTGKTRGRKARNSNNSKEGVE-----------GRKSKKQKRGSKEEPPTDYIHVRARR 151

Query: 150 GQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLS 209
           GQATDSHSLAERVRREKI+ +++ LQNL+PGC K  G A++LDE INYV +LQ QVEFLS
Sbjct: 152 GQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLS 211

Query: 210 MELAAACSSLGINFGT 226
           M+L  + S +  +FG+
Sbjct: 212 MKL-TSISPVVYDFGS 215

[Close]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10
Match: AT5G62610.1 (AT5G62610.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-25
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1


Query: 98  KRKAKQESESNSGALCAARPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHS 157
           K++    SES +G        + S+ GGG K    + + E P + +HVRA+RGQATD HS
Sbjct: 106 KKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHS 165

Query: 158 LAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMEL 213
           LAER RREKI+ K+  LQ++IPGC+K +G A+VLDE INY+ SLQ QVEFLSM+L
Sbjct: 166 LAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKL 220

[Close]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr
Match: gi|659114293|ref|XP_008456996.1| (PREDICTED: transcription factor BEE 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 4.8e-80
Identity = 170/234 (72.65%), Postives = 186/234 (79.49%), Query Frame = 1


Query: 14  MSEFRQDLH--------QERGLNIEVLTQFSNMTESMLE------GGLENLLGYHFQLPE 73
           M EFRQ+L         +E   N+EV+ QFSN TES+LE        +EN  GYHFQLPE
Sbjct: 1   MREFRQNLQHFKSSKASEEMTFNMEVINQFSNATESVLEDFNETESSVENFWGYHFQLPE 60

Query: 74  STTPSSLSNFPCVTLLKCQNEFP-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA--- 133
           +T+PSSLSNF  V LLKCQ +FP ITR+ LLVD+AQETMKRK KQ SESNSG LCAA   
Sbjct: 61  NTSPSSLSNFSSVALLKCQKDFPVITRSSLLVDSAQETMKRKEKQVSESNSGILCAAFGN 120

Query: 134 ---RPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLK 193
                  + NLGGGRKRRNCEKEQEKP  VVHVRAKRGQATDSHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNLGGGRKRRNCEKEQEKPG-VVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 194 CLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGINFGTG 227
           CLQN+IPGCHKSMGMAMVLDETINYV+SLQNQVEFLSMELAAACS+LGINFG G
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLGINFGMG 233

[Close]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr
Match: gi|778680713|ref|XP_011651380.1| (PREDICTED: transcription factor BEE 3-like isoform X4 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 1.0e-77
Identity = 167/239 (69.87%), Postives = 183/239 (76.57%), Query Frame = 1


Query: 14  MSEFRQDLH--------QERGLNIEVLTQFSNMTESMLE------GGLENLLGYHFQLPE 73
           M+EFRQ+L         +E   N+EV+ QFSN  ES LE        +EN  GYHFQLPE
Sbjct: 1   MTEFRQNLQHFKSSKASEEMTFNMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPE 60

Query: 74  STTPSSLSNFPCVTLLKCQNEFP-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA--- 133
           +T+PSSLSNF  V LLKCQ EFP ITR+ L VD+  ETMKRK KQ SE NSG LCAA   
Sbjct: 61  NTSPSSLSNFSSVALLKCQKEFPVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGN 120

Query: 134 ---RPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLK 193
                  + N+ GGRKRRN EKEQEKP EVVHVRAKRGQATDSHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNMEGGRKRRNYEKEQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 194 CLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           CLQN+IPGCHKSMGMAMVLDETINYV+SLQNQVEFLSMELAAACS+LGINFG G  RKA
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKA 239

[Close]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr
Match: gi|659114295|ref|XP_008456998.1| (PREDICTED: transcription factor BEE 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 6.5e-77
Identity = 165/228 (72.37%), Postives = 181/228 (79.39%), Query Frame = 1


Query: 14  MSEFRQDLH--------QERGLNIEVLTQFSNMTESMLE------GGLENLLGYHFQLPE 73
           M EFRQ+L         +E   N+EV+ QFSN TES+LE        +EN  GYHFQLPE
Sbjct: 1   MREFRQNLQHFKSSKASEEMTFNMEVINQFSNATESVLEDFNETESSVENFWGYHFQLPE 60

Query: 74  STTPSSLSNFPCVTLLKCQNEFP-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA--- 133
           +T+PSSLSNF  V LLKCQ +FP ITR+ LLVD+AQETMKRK KQ SESNSG LCAA   
Sbjct: 61  NTSPSSLSNFSSVALLKCQKDFPVITRSSLLVDSAQETMKRKEKQVSESNSGILCAAFGN 120

Query: 134 ---RPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLK 193
                  + NLGGGRKRRNCEKEQEKP  VVHVRAKRGQATDSHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNLGGGRKRRNCEKEQEKPG-VVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 194 CLQNLIPGCHKSMGMAMVLDETINYVHSLQNQVEFLSMELAAACSSLG 221
           CLQN+IPGCHKSMGMAMVLDETINYV+SLQNQVEFLSMELAAACS+LG
Sbjct: 181 CLQNIIPGCHKSMGMAMVLDETINYVYSLQNQVEFLSMELAAACSTLG 227

[Close]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr
Match: gi|700202628|gb|KGN57761.1| (hypothetical protein Csa_3G282490 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 7.2e-76
Identity = 160/217 (73.73%), Postives = 173/217 (79.72%), Query Frame = 1


Query: 28  NIEVLTQFSNMTESMLE------GGLENLLGYHFQLPESTTPSSLSNFPCVTLLKCQNEF 87
           N+EV+ QFSN  ES LE        +EN  GYHFQLPE+T+PSSLSNF  V LLKCQ EF
Sbjct: 4   NMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPENTSPSSLSNFSSVALLKCQKEF 63

Query: 88  P-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA------RPLKASNLGGGRKRRNCEK 147
           P ITR+ L VD+  ETMKRK KQ SE NSG LCAA          + N+ GGRKRRN EK
Sbjct: 64  PVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGNDSSNARSSKNMEGGRKRRNYEK 123

Query: 148 EQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLKCLQNLIPGCHKSMGMAMVLDET 207
           EQEKP EVVHVRAKRGQATDSHSLAERVRREKIN+KLKCLQN+IPGCHKSMGMAMVLDET
Sbjct: 124 EQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLKCLQNIIPGCHKSMGMAMVLDET 183

Query: 208 INYVHSLQNQVEFLSMELAAACSSLGINFGTGAIRKA 232
           INYV+SLQNQVEFLSMELAAACS+LGINFG G  RKA
Sbjct: 184 INYVYSLQNQVEFLSMELAAACSTLGINFGMGDNRKA 220

[Close]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr
Match: gi|778680705|ref|XP_011651377.1| (PREDICTED: transcription factor BEE 3-like isoform X1 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 3.3e-73
Identity = 167/267 (62.55%), Postives = 183/267 (68.54%), Query Frame = 1


Query: 14  MSEFRQDLH--------QERGLNIEVLTQFSNMTESMLE------GGLENLLGYHFQLPE 73
           M+EFRQ+L         +E   N+EV+ QFSN  ES LE        +EN  GYHFQLPE
Sbjct: 1   MTEFRQNLQHFKSSKASEEMTFNMEVINQFSNAMESALEDFNETESSVENFWGYHFQLPE 60

Query: 74  STTPSSLSNFPCVTLLKCQNEFP-ITRTGLLVDNAQETMKRKAKQESESNSGALCAA--- 133
           +T+PSSLSNF  V LLKCQ EFP ITR+ L VD+  ETMKRK KQ SE NSG LCAA   
Sbjct: 61  NTSPSSLSNFSSVALLKCQKEFPVITRSSLPVDSGHETMKRKEKQVSERNSGILCAAFGN 120

Query: 134 ---RPLKASNLGGGRKRRNCEKEQEKPAEVVHVRAKRGQATDSHSLAERVRREKINNKLK 193
                  + N+ GGRKRRN EKEQEKP EVVHVRAKRGQATDSHSLAERVRREKIN+KLK
Sbjct: 121 DSSNARSSKNMEGGRKRRNYEKEQEKPGEVVHVRAKRGQATDSHSLAERVRREKINHKLK 180

Query: 194 CLQNLIPGCHK----------------------------SMGMAMVLDETINYVHSLQNQ 232
           CLQN+IPGCHK                            SMGMAMVLDETINYV+SLQNQ
Sbjct: 181 CLQNIIPGCHKVNCFFHGPVQNIGVSTLMFKQNFQIILQSMGMAMVLDETINYVYSLQNQ 240

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g06130.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BEE3_ARATH	9.2e-31	43.85	Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1	[more]
BEE1_ARATH	1.2e-30	53.16	Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1	[more]
BH075_ARATH	1.7e-29	63.21	Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1	[more]
BH137_ARATH	8.3e-24	47.06	Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1	[more]
BH079_ARATH	1.4e-23	53.04	Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1	[more]

BLAST of Cp4.1LG03g06130.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCH4_CUCSA	5.0e-76	73.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G282490 PE=4 SV=1	[more]
A0A061EIH6_THECC	6.8e-41	47.56	Basic helix-loop-helix DNA-binding superfamily protein, putative OS=Theobroma ca...	[more]
U5GG63_POPTR	1.4e-38	47.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1	[more]
B9T6S5_RICCO	2.3e-36	58.13	DNA binding protein, putative OS=Ricinus communis GN=RCOM_0016380 PE=4 SV=1	[more]
A0A067EV90_CITSI	2.5e-35	40.96	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017964mg PE=4 SV=1	[more]

BLAST of Cp4.1LG03g06130.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73830.1	5.2e-32	43.85	BR enhanced expression 3	[more]
AT1G18400.1	6.7e-32	53.16	BR enhanced expression 1	[more]
AT1G25330.1	9.7e-31	63.21	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G50915.1	4.7e-25	47.06	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G62610.1	8.0e-25	53.04	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Cp4.1LG03g06130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114293\|ref\|XP_008456996.1\|	4.8e-80	72.65	PREDICTED: transcription factor BEE 3-like isoform X2 [Cucumis melo]	[more]
gi\|778680713\|ref\|XP_011651380.1\|	1.0e-77	69.87	PREDICTED: transcription factor BEE 3-like isoform X4 [Cucumis sativus]	[more]
gi\|659114295\|ref\|XP_008456998.1\|	6.5e-77	72.37	PREDICTED: transcription factor BEE 3-like isoform X3 [Cucumis melo]	[more]
gi\|700202628\|gb\|KGN57761.1\|	7.2e-76	73.73	hypothetical protein Csa_3G282490 [Cucumis sativus]	[more]
gi\|778680705\|ref\|XP_011651377.1\|	3.3e-73	62.55	PREDICTED: transcription factor BEE 3-like isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g06130	Cp4.1LG03g06130	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06130.1:cds:001	Cp4.1LG03g06130.1:cds:001	CDS
Cp4.1LG03g06130.1:cds:002	Cp4.1LG03g06130.1:cds:002	CDS
Cp4.1LG03g06130.1:cds:003	Cp4.1LG03g06130.1:cds:003	CDS
Cp4.1LG03g06130.1:cds:004	Cp4.1LG03g06130.1:cds:004	CDS
Cp4.1LG03g06130.1:cds:005	Cp4.1LG03g06130.1:cds:005	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g06130.1	Cp4.1LG03g06130.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 151..213 score: 7.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 155..202 score: 5.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 157..207 score: 4.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 151..201 score: 15
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 149..213 score: 1.96
None	No IPR available	unknown	Coil	Coil	coord: 228..231 scor
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 122..215 score: 5.2
None	No IPR available	PANTHER	PTHR12565:SF128	TRANSCRIPTION FACTOR BHLH75	coord: 122..215 score: 5.2