Cp4.1LG03g04880.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g04880.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 5281888 .. 5287108 (+)
Sequence length495
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCCCCCAACGTTCAACGCCAAAAGGCTAACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTGCCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACACCGCCTCCGCCGCCGCCGATTAAAGGCGAAATCATCGTGGATTCAGGCTGTAAGACAATAAAGCCGAGTAAAACGCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCAGTCTAATCCCACGGCGGAGAAACTCCCGCCGGCGAAAAAAACTTCCCCGTCGTTACACTCTGTTAAGGATAGTTGACCGTTCACTAGATATTTGCCTTTACCATATTTGCCCTCTTATTAAAGGCAAATATATTGCATTCATTTATTATACTTTCCTTTTATTACTATTTCCATATTATTTGTAATTTACCATATTTCTGTATCCTGAAAATGATTATAAATAAGAGAACTCTCACCCCATTTAGGTGTGGTGATTCAGCAAACATTCACATGGTATCAGAGCCCTTTCGGTTTAACAACCTGATCCTTTCTTCTCTATGGCTTCCGAATCTTCTTATCATCTTCTTCCTTTCAATACTCTAATCCATATGATCACCATCAAACTTTCTTCCTCCAATTATCTTCTTTGGAAAAGCCAACTTCTCCCTCTCCTTGAGAGTCAAGACATGCTGGGCTATGTCGATGGAACTATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCTTCAACACTCAACCCCAAATATTTGGCATGGAGAGCAGCCGATCAACGACTTCTCTGTCTCCTGCTCTCCTCTCTCACTGAGGAAGCCATGGCTGTTGTCGTTGGTCTCTCTACTGCACGTGATGTTTGGCTTGCGTTGGAAACTACGTTCAGCCATCAGTCGAAAGCTCGTGAACTGAGACTCAAGGATGACTTGCAGTTGATGAAACGTGGCACCAAACCTGTTGCTGAGTATGCCCGTGCCTTCAAAAAAATTTGTGACCAACTTCATGCCATCGGCAGACCGGTCGAGGACATTGATAAAGTGCACTGGTTCCTTCGTGGACTCGGCACCGAATTTTCAGCTTTTTCTACTGCTCAGATGGCTCTCACCTCTATCCCCTGTTTTGCAGATTTAGTCTCTAAAGCTGAAAGTTTTGAGTTGTTTCAGCTCTCCCTTGAGTCCTCTAACTCCACTCCTACAGCATTCACAGTCACTAATCGTGGTCGCACCCATGGAAGCCACCCTGCTTCCTTTACCAACCAGCGAGGTCGTTCTTATTCTCACAAAAACAACTCTTTTAATCGAGGACGAACCCACTCAAGTCAAGGTCGTCGACCACCTCACTGCCAAATATGCCGCAAAGAGGGCCATTATGCTGACCGCTGCAACCAACGGTATGTTCGACCTGATTCTTCTCATGCTCACCTTGCTGAAGCCTTTAACACGTCATGTTCTATTGCTGGACCCGATACTGCTGATTGGTTTCTGGACACTGGAGCTTCGGCCCATATGACTGCCGACCCATCTATTTTGGATCAGTCTAAAAATTACACGGGTAAGGACTCTGTGATTGTAGGAAACGGTGCATCCCTACCCATTACCCACACCGGTACTCTTTCTCCTGTTCCAAATATTCACTTGTTAGATGTCTTGGTTGTCCCTCACCTCACTAAAAATCTTCTTTCCATAAGTAAATTAACGTCTGATTTTCCTCTCTCCGTTACATTTACTAATAATCTTATTACTATCCAGAATCGTCAAACAGGAAGGGTGGTGGCAACCGGTAAAAGAGATGGAGGGCTATATGTGCTGGAGCGCGGCAACTCTGCTTTTATTTCAGCCCTTAGAAACAAATCTTTACGTGCCTCATATGATTTATGGCATGCTCGTCTAGGTCATGTGAATCATTCTGTTATTTCTTTTTTAAATAGAAAAGGTCATCTTTCTCTTACGTCTTTATTGCCTTCTCCATCATTATGTAATACTTGTCAGCTTGCGAAAAGTCATCGATTGCCTTATTCCCGCAATGAACGTAGGTCGTCTCATGTGTTAGATCTTATTCATTGTGATCTTTGGGGTCCTTCTCCCGTCAAATCAAATTCGGGTTTCCTTTATTATGTTATTTTTATTGATGATTATTCTCGATTCACTTGGTTTTACCCTTTAAAATTTAAATCTGATTTTTTTGATATTTTTCTTCAATTTCAAAAATTTGTGGAAAATCAATATTCTTCTCGTATCAAGGTATTTCAAAGCGATGGTGGTACCGAATTTACTAGTACTTGTTTCAAAACTCATTTACGTAATTCTGGCATCCACCATCAACTCTCTTGTCCATATACACCTGCTCAAAATGGTCGTGCTGAGAGAAAACATCGTCATGTGACTGAGACTGGCTTGGCCCTTCTCTTTCACTCTCATCTTTCTTCTCGTTTTTGGGTTGACGCCTTCAGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCCTTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCCGCAGCATTCCTTGTATTTTTTTGGGTTATAGTCCTGCTCATAAAGGGTTCCGCTGTCTTGATCCGGCCACCACTAAGCTATATATCACCTGTCATGCTCAATTTGATGAAACCCACTTTCCTGCTATCCCTAGCTCCCAGACCCAACCTCTTTCCTCTATTCCTATTTCAAATTTCTTAGAACCACATTTTCATCATATTGATTCATCCCCCCCTACCACTTCATCACCGCAAACTCCTCGATCCAGTTCATCCCCATGTGATATTTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGGATTCAAATCTGCGGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGCATTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCTGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTTTCTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGGGTATATTGATCCTCGATTTCCCACTCATGTTTGTCTATTAAAGAAAGCCCTCTATGGTTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTACAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTGTTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTGGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCACGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACCGCTGCTGAACTTCTTTGGGTTATGCATCTTTTGCATGACCTCAAGGTCCCTATTTCACAGCAGCCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCCGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTTCTTCGAGAACTTGTTATCGCTGGCAAACTTCACACACAATATGTACCCTCTCATCTCCAAGTTGCTGACATCTTCACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTTACGTTCGTTCAAATCCGACGCTCAGCTTGCGGGGGGGTGTTAAGGATAGTTGACCGTTCACTAGATATTTGCCTTTACCATATTTGCCCTCTTATTAAAGGCAAATATATTGCATTCATTTATTATACTTTCCTTTTATTACTATTTCCATATTATTTGTAATTTACCATATTTCTGTATCCTGAAAATGATTATAAATAAGAGAACTCTCACCCCATTTAGGTGTGGTGATTCAGCAAACATTCACACACTCCGAAAAAGGTTTGAAGAAATCAATCTCTCATCTCCCTACCGCCGCCGCCGCCCCAACTACATCGCTGGCGTCCTCCGACAGCTGGAAACCGCCGAAAAATTCCCCAACCAAGAAGTTCGATCTCGTAACTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTT

mRNA sequence

TCTTCCCCCAACGTTCAACGCCAAAAGGCTAACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTGCCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACACCGCCTCCGCCGCCGCCGATTAAAGGCGAAATCATCGTGGATTCAGGCTGTAAGACAATAAAGCCGAGTAAAACGCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCACTGGAAACCGCCGAAAAATTCCCCAACCAAGAAGTTCGATCTCGTAACTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTT

Coding sequence (CDS)

TCTTCCCCCAACGTTCAACGCCAAAAGGCTAACCCGATCGCCTCCCCGAACCGCCGGACTCCGTCGCTTCGTTTTCGATTCAAGAAGTCCTCTGCAACTGTGCCGCTCGACGCCGCCGTGCCATGTCACGATGAACTCTCTTTGTCGCCGGAGTTCAATACACCGCCTCCGCCGCCGCCGATTAAAGGCGAAATCATCGTGGATTCAGGCTGTAAGACAATAAAGCCGAGTAAAACGCGGAAGAAATCCGAGTCAACTCAGTCGAATCCGAAATCCGAGTCAACTCACTGGAAACCGCCGAAAAATTCCCCAACCAAGAAGTTCGATCTCGTAACTGTAATTGTTGCGGTAGCGATTGTAGTACTGTGGGGACGACTCTGCGCCATACTCTGCACGGCGGCGCTGTTCTACCTCAGACGTTGCCTGAGATCGAAAGCCGAACTGGACGTCGTCGTCGACGGAGGAGGTGCTTTTGGTAGGGTTTCATCAGAGGTT

Protein sequence

SSPNVQRQKANPIASPNRRTPSLRFRFKKSSATVPLDAAVPCHDELSLSPEFNTPPPPPPIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTHWKPPKNSPTKKFDLVTVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFGRVSSEV
Homology
[Close]
BLAST of Cp4.1LG03g04880.1 vs. TrEMBL
Match: A0A0A0LCZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 1   SSPNVQRQKANPIASPNRRTPSLRFRFKKSSATVPLDAAVPCHDELSLSPEFNTPPP--- 60
           SS  +  +KA+ IA   RRT S  FRFKKSSATVP+D A P HDELS  PEF   PP   
Sbjct: 24  SSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVDVADPSHDELSFLPEFKKSPPLSF 83

Query: 61  ----PPPIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTHWKPPKNSPTKK 108
                P + GEI+VDS   ++KPS+TRKK  STQSN       +   K SPT+K
Sbjct: 84  IMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSN-------FTTKKLSPTRK 127

[Close]
BLAST of Cp4.1LG03g04880.1 vs. NCBI nr
Match: gi|700203414|gb|KGN58547.1| (hypothetical protein Csa_3G680630 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 58/114 (50.88%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 1   SSPNVQRQKANPIASPNRRTPSLRFRFKKSSATVPLDAAVPCHDELSLSPEFNTPPP--- 60
           SS  +  +KA+ IA   RRT S  FRFKKSSATVP+D A P HDELS  PEF   PP   
Sbjct: 24  SSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVDVADPSHDELSFLPEFKKSPPLSF 83

Query: 61  ----PPPIKGEIIVDSGCKTIKPSKTRKKSESTQSNPKSESTHWKPPKNSPTKK 108
                P + GEI+VDS   ++KPS+TRKK  STQSN       +   K SPT+K
Sbjct: 84  IMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSN-------FTTKKLSPTRK 127

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g04880.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04880.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCZ2_CUCSA2.5e-1350.88Uncharacterized protein OS=Cucumis sativus GN=Csa_3G680630 PE=4 SV=1[more]
BLAST of Cp4.1LG03g04880.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04880.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203414|gb|KGN58547.1|3.6e-1350.88hypothetical protein Csa_3G680630 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG03g04880Cp4.1LG03g04880gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG03g04880.1:cds:002Cp4.1LG03g04880.1:cds:002CDS
Cp4.1LG03g04880.1:cds:001Cp4.1LG03g04880.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG03g04880.1Cp4.1LG03g04880.1-proteinpolypeptide