Cp4.1LG03g03930.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g03930.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane and coiled-coil domains protein 1
Location	Cp4.1LG03 : 1915088 .. 1915669 (-)
Sequence length	582

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTCAAGCCTTTTGGGCTTGTGATGAAAATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGCGCCATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCCGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

mRNA sequence

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTCAAGCCTTTTGGGCTTGTGATGAAAATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGCGCCATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCCGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Coding sequence (CDS)

ATGGCCACAATCCCCCTCTTTTCCTCCTTCCGATATTCCGACAGCCTCACGGTGGTCGGAATCTCTGTCTGCACTGCCGTCATCTGCGAGGCCATCTCATGGATTCTCATCTACCGCACCAACTCCTACAAAACCCTTCGATCCTCCATCGACAAGGCCGCCAAAAAGCTCGAGACCATGAAGACCGACACCTCCAAAATCAACGTCAAGAAATCGAAGACCAAGAAGATCGATCGCGTCGAGACCAGTCTTAAGGAATCGAGCCGCGACCTCTCGCTTTTCAAGTTTAAATCCGGCGCCGTTGTTGCTCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTTGTTGCCAAATTGCCGTTCAAGCCTTTTGGGCTTGTGATGAAAATGAGTCACCGAGGGTTACTCGGTGACGATCCTACCGATTGCGCCATGGCGTTCTTGTACTTCCTCTGTTCGATTAGCATTCGGACCAATCTCCAGAAGTTCTTGGGATTCTCGCCACCGAGAGGCGCCGGTGCCGCCGCCGGCTTGTTCCCGATGCCAGATCCTAAGACGAACTGA

Protein sequence

MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMPDPKTN

Homology

[Close]

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot
Match: TMCO1_BOVIN (Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot
Match: TMCO1_HUMAN (Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMCO1 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot
Match: TMCO1_MOUSE (Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot
Match: TMCO1_PIG (Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot
Match: TMCO1_PONAB (Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-40
Identity = 85/182 (46.70%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 9   SFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSKIN 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K +T   +
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKK-ETITES 61

Query: 69  VKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK ++RDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFPMP 188
           P   +  +SHR LLGDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

Query: 189 DP 191
            P
Sbjct: 182 PP 182

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL
Match: A0A0A0LGX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-94
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL
Match: I1ML54_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G043900 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.8e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL
Match: A0A0B2SJD2_GLYSO (Transmembrane and coiled-coil domains protein 1 OS=Glycine soja GN=glysoja_015057 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.8e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL
Match: B7FGM9_MEDTR (Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=2 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.0e-86
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL
Match: I3S6A1_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 5.8e-86
Identity = 166/187 (88.77%), Postives = 178/187 (95.19%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AG FP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGFFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TAIR10
Match: AT3G12030.1 (AT3G12030.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 317.0 bits (811), Expect = 8.0e-87
Identity = 164/193 (84.97%), Postives = 179/193 (92.75%), Query Frame = 1


Query: 3   TIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+Y+DSLTVVGIS CTA++CEAISWILIYRT+SYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  D--TSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
           +  +SK+++KKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 182
           VVAKLPF P  +V KMSHRGL GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 AAGLFPMPDPKTN 194
           A GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of Cp4.1LG03g03930.1 vs. TAIR10
Match: AT5G06660.1 (AT5G06660.1 Protein of unknown function DUF106, transmembrane)

HSP 1 Score: 312.8 bits (800), Expect = 1.5e-85
Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MAT-IPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+Y+DSLTVVGIS CTA++CEAISWILIYRT+SYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTD--TSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKTD  +SK+  KKSKTKKIDRVE+SLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVAKLPF P  +V KMSHRGL GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 AGAAAGLFPMPDPKTN 194
           A  A GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

[Close]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr
Match: gi|449437555|ref|XP_004136557.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 352.4 bits (903), Expect = 4.9e-94
Identity = 185/193 (95.85%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr
Match: gi|659084702|ref|XP_008443026.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-93
Identity = 184/193 (95.34%), Postives = 189/193 (97.93%), Query Frame = 1


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTAVICEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KTD+SKI VKKSKTKKIDR+ETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGL G+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180

Query: 181 AAGLFPMPDPKTN 194
            AGLFPMPDPKTN
Sbjct: 181 -AGLFPMPDPKTN 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr
Match: gi|571523916|ref|XP_006598704.1| (PREDICTED: uncharacterized protein LOC100499752 isoform X1 [Glycine max])

HSP 1 Score: 332.8 bits (852), Expect = 4.0e-88
Identity = 167/187 (89.30%), Postives = 180/187 (96.26%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGL+MKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAGA AGLFP
Sbjct: 125 FKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGAGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 191

[Close]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr
Match: gi|357508575|ref|XP_003624576.1| (transmembrane and coiled-coil protein [Medicago truncatula])

HSP 1 Score: 326.6 bits (836), Expect = 2.9e-86
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           FKPFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

[Close]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr
Match: gi|502107011|ref|XP_004493128.1| (PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cicer arietinum])

HSP 1 Score: 325.1 bits (832), Expect = 8.3e-86
Identity = 166/187 (88.77%), Postives = 179/187 (95.72%), Query Frame = 1


Query: 7   FSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETMKTDTSK 66
           FS F+YSD LTVVGIS CTA++CEAISW+LIYRTNSYK LRSSIDKA+KKLETMKTD++K
Sbjct: 5   FSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNK 64

Query: 67  INVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLP 126
           IN+KKSKTKKIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLP
Sbjct: 65  INIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLP 124

Query: 127 FKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAAAGLFP 186
           F+PFGLVMKMSHRGL G+DPTDC+MAFLYFLCSISIRTNLQKFLGF+PPRGAG  AGLFP
Sbjct: 125 FQPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAG--AGLFP 184

Query: 187 MPDPKTN 194
           MPDPKT+
Sbjct: 185 MPDPKTS 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g03930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMCO1_BOVIN	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Bos taurus GN=TMCO1...	[more]
TMCO1_HUMAN	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=TMC...	[more]
TMCO1_MOUSE	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Tmc...	[more]
TMCO1_PIG	5.3e-40	46.70	Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa GN=TMCO1 PE=2 SV=1	[more]
TMCO1_PONAB	5.3e-40	46.70	Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo abelii GN=TMC...	[more]

BLAST of Cp4.1LG03g03930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX0_CUCSA	3.4e-94	95.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799650 PE=4 SV=1	[more]
I1ML54_SOYBN	2.8e-88	89.30	Uncharacterized protein OS=Glycine max GN=GLYMA_16G043900 PE=4 SV=1	[more]
A0A0B2SJD2_GLYSO	2.8e-88	89.30	Transmembrane and coiled-coil domains protein 1 OS=Glycine soja GN=glysoja_01505...	[more]
B7FGM9_MEDTR	2.0e-86	89.30	Transmembrane and coiled-coil protein OS=Medicago truncatula GN=MTR_7g085050 PE=...	[more]
I3S6A1_MEDTR	5.8e-86	88.77	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of Cp4.1LG03g03930.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12030.1	8.0e-87	84.97	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	1.5e-85	84.69	Protein of unknown function DUF106, transmembrane	[more]

BLAST of Cp4.1LG03g03930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437555\|ref\|XP_004136557.1\|	4.9e-94	95.85	PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis sa...	[more]
gi\|659084702\|ref\|XP_008443026.1\|	1.1e-93	95.34	PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cucum...	[more]
gi\|571523916\|ref\|XP_006598704.1\|	4.0e-88	89.30	PREDICTED: uncharacterized protein LOC100499752 isoform X1 [Glycine max]	[more]
gi\|357508575\|ref\|XP_003624576.1\|	2.9e-86	89.30	transmembrane and coiled-coil protein [Medicago truncatula]	[more]
gi\|502107011\|ref\|XP_004493128.1\|	8.3e-86	88.77	PREDICTED: transmembrane and coiled-coil domain-containing protein 1-like [Cicer...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008559	TMCO1
IPR002809	EMC3/TMCO1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g03930	Cp4.1LG03g03930	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g03930.1:cds:001	Cp4.1LG03g03930.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g03930.1	Cp4.1LG03g03930.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002809	Protein of unknown function DUF106, transmembrane	PFAM	PF01956	DUF106	coord: 16..173 score: 1.5
IPR002809	Protein of unknown function DUF106, transmembrane	SMART	SM01415	DUF106_2	coord: 14..174 score: 4.4
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PIR	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..193 score: 1.6
IPR008559	Uncharacterised conserved protein UCP023322, transmembrane eukaryotic	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..193 score: 8.8E
None	No IPR available	unknown	Coil	Coil	coord: 43..63 scor