Cp4.1LG03g00300.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g00300.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Co-chaperone protein HscB, mitochondrial, putative
Location	Cp4.1LG03 : 1704031 .. 1710530 (+)
Sequence length	4674

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCTATTGTCAGTTGGTTAAGTATAGCCGTGAGCCTCAAAAGAGAGATTTTTCATTCCTTCTCTATTTCTCGGACAAGCAATTCTAACACCACTCTAAAACCTCGTTAAACCCCGGGAGAGTGGATTCGGTTCCAAACAAATCGGACCGATTCTTCTTCCAATGTCGAAGGCGAAGCTGCGATCTTCACTTCTCGCCGTTCTGCGCTGCAATACAACTCACTCATCCGCCATTAATTACCCAAATGTTTCGAATTCGGCTCTATCAGCCCAAATTCCGTCTAATTGCATCTCACTCTCGCAACTTCCTTCCACCGCAGAATGCTTTCGGCCGTGGCGATCCTCTAGATGTGAATTTCTCAACAATCTCAGGTTTCCCTCGAGGGTTTTTAGTTCTCGATCGGCAGAGGCGTCGGACCTGAAACTTAGGTGCTGGAATTGTGGCGCTGCGGCTCCAACGTCAGTGGTGTTTCTGGTGTGTGATTCTTGTCGGAGCATTCAGCCTTTGGACCAGTCGGTGGATTATTTTCAGATATTTGGCTTGTAAGTGCAAGGAAAAACAAGAATTTATTGTTCTTTCTTAACCTATTTTAATATTGTATTGATAGCTGAGAGAATAACTAGATGATGGAATTTGATTATCAACTGATTATGGGAAGGGATGAAAGATTTGAACTTAGGGCTTGATGGGTCTGTTAAAATTCTTTTGGTTCCAAATAGAATGAAAAAATTCTGATGCATCAATTACAAAGCTTCTCTTTCTCTTCATTTTCTGCTCTGTTCATATTGCCTCTGAGTACTCAAAGTCCAAGGAAACTTTGGCTTATGGTTTTTTAATTTCGAGAACATTGATGTAATCCACCCGTCATGTTTCTTTCCTTGAACCTTCCGCCTCATTTACTGGAGGGCATATGGGATCCTTCTCTGACTCATTGCTAGTAGGTGGGAATTATTGAAATGATGTATAATTAGAATTCCTAAATCTTTTTCCAGGGAAAAGGAGTATGAAATTGGAGATGTCAATCTGGAGAGCCAGTATAAAGATTGGCAGAAGAAATTACATCCCGACTTAGTTCATTCAAAATCAGACGTCTGTCTCATTTCATCTTTGAGAAGTTTGGTAATCTTTTAGGCTCTAATTTTCCGTTTCTTGAGTTTTGTAGAGAGAAAGAGAATATGCTGCTGAACAATCTGCTCGGGTGATCGATGCTTACCGCACTCTTAGTAAGCCATTGTCGAGAGCAATATATATTGTAAGCATGCTGTCTACCTTATCATCATTATTAATTTTTGTATCTTATTTGTGTTCTAAATGCCATGCTATCATCGATTTCTACCTCTAGTTACTTGAAGTCGTGTGATGATTTAAGCTGGGTAATTGGAATGAAACATTCTCAGGAAATTTCTTCATACCAAGTTTCCTTAATAATAGTTCCTTTGCAACCCCATCCCACTTACATTATACATGGAAGTGATGGACCAACATGTGATGGTAACTAGAACTGAACCAATTGATTGAGCTTCTTCATAATAGTTGTGCTTTGAAAGAATTGTTTGCAACTATTTTATATGCTTTTGGTATTTTGGAGTTAAAAACGTCTCATGTTTGAGTTTTGATGCACTGGGTGAAGATTGTTTTCCCATTTTTGCCTAAAGGGGCAGAGCATATCACTCAATTATAGGCTCAGGCATTTGAGTCCTAGAACGGGCATGGGATTGTTTGTAAGGTCTAAATGGAAAGATGTGGAGACTGCACTCTTAAGCATAATCCTAAGTGATGTTTAGTGTTGGGATCAAATAACATTTCCTCATGTGAGATCCCACACCGATTTGGGAGGGAAACGAAGCATTCCTTATAAGGGTGTGGAAACTTCTCCCTAGTTGACGCGTTTTAAAACTGAGGCTGACGGCAATATGTAACGTGCCAAAGCGGACAATATTTGGTTTATTTCCTACTCGGACTCTTGAATAAACACTATTAGAAGAGAATATCGGTTTATTTCCTACTCGGACTCTGTAATTTGATGTTTGTGATCTTGGTTTATATGCATTGTGTTTATGGCATCTGCAATCTAGAATATCGGTTTTAATATTTTCTCGACTTCCTTTCTAATTCCAAATTATCTACATTCTACAATATTTGGTCTTCCCCTCCAATGAGCTTGTAAGATTATATTGCCATCCTTTTTCAGCTGAAGCTTGAGGGTTTAGATGTCAATGAAGAGGATACAATATCTGAACCAGAGTTGCTAAATGAGGTAACTAGTAAGAACCTAAGTTCGACCCAGTCTGAGTTATTCAGTTCTATGAGAGCTTTTGGCTTTCTGTTTGTAAAAGCATTTTATGAGATCATTTCATAGATCATGATAAGAAACTCATGCTCCTGATTTTCAATGCTCAGACTGCAAGCTTATGTTCTATTTACAGTTGATTTATATAAAGTTACCAAACCCTTATTGCAGATTATGGAAATCAGGGAAGCTGTAGAAGATGCATCGGGATCTCAGGAACTAAACCAGATTCAGTCACAGGTGCTACTCGGGCACTTGTTCCGATTATTGTCGTTATTGTTTTTCTTCTTTATACATACACAAATTCGGGTGGGAGATTGGAGGAGTAAGTTGCATTTAAAGAATTAAAGAGCTTTTTATGATTACTTAACCTGTTTCATCTGCCTTCTTGTTCATCTAGATGCAAGAGAAACTAAATCATTGGTCTAACACATTTGCGAAAGCATTGCGAAACCGGAACTTCGACGATGCCATCTCGTCTATCCAGCGAATGACCTACTACGAGCGGGTGAAGGAAGAAATTACAAAGAAGCTTTAGTGCAGGAGGTATAATCCATGGAAGCACTAGGTGTAGAATTCAATCTTTATCTACCTCTTGAAATGATTGCTCATATCTCAGTTTTTTAGCACTTAAAAGTTCATAGATTGCTGGTTAATATTGTAGCTGTGAGTAAAAATTTCATATCAGTTTTGTGATTCTGATGTTGCTGAATGCTGGCAATCTCAGTGTGTATCAATAAGGAGACAGAAATTAAGAATGTTAAGAAACAGCCTACATACAATAAATACTCATTAATCTGTCTTGTTTGAGAAATTTTGTGGGCTTATTACAAAATTTTCTATTTATTTTTGTAGGGATTTTTCGATTATAAAGTATACTCATTCATTACAATAAAACTCAATAGACATGTCAAATTTTAGCTTTCTTAAAGCCAAAAGTTGGATTCTTCAACTTCAAATTTAAAAAAAATGGTAAGAAAGCCAACCCCTATGTCTCAATGTATTCTTAAGCAATCTATCAAAACCTACAAACACCTCTAAAGGAACATTCAAACGCTAAAAAAAAGATATCATATTTTAAACTTTCTTCTTCTAATTAAACCCAATTTTTGTTGAAGTACATCACGAGCCAAAATATGCTTACCCTCCCTATTGAGGCCAAAGAAAACTGTCCTGAAGTTAATACTGCTGGGAGCAATCCCACTGTCGAGCATATCAGATACAATCCGCAGGGCTTCTTCAGACCTCCCTGCTTCACACAGACAAGAAATCAGCATTGAATAAGCTTTAAAATCAGGAGAAGGCCCATTTTTCTTTATATAATGGAAAACCTTCCATGCTTCACCAAATTTTCCCATGTTCATGTAGCCATATATCACTGCTGAGTAAGTAGCAATTGTTGGTTCACAACCCTCCTGCAGCATCTTTGCAAGTATCTCCAAAGCTCTTCTTGTTTGATTCTCCTTGAATGAATGAACTATGAATGATGTGTATACGTGCACGGTTGGATTTATACCGACCTGTTTCATAGCGTTCATCTTCGCCAACGCCTCGTCCGTTCGTCCCCTTTGTAGAAGTCCATGAATGATGCTTCCGTAAATGTAGTTATCTAGTTTAGATCTCTCAGTCCCTACCTCTTCTAGTAATGTCAACGCCTCGTCTAACTTCCCGACGCGACAAAGAGCTCGAATATACAAAGAGTATATGAGAGGAACCGTGAAACCGACATTTCGAAGGTTATCTATGCATCGTTTAGCATCTGAAAGTCTATCAAGTTTGCATAAACAACCTAGATAAGTTTCTAACAACTCCTTATCAGGAATGTACTTAGAATGAATCATTTCTTGTAACAAAGTAATGGCTTCATTTACCTTCCTCCGTTTTGATCCGCAAAGGGACATGATCAAATACTTATACGTATTGGCATTTGGCTTGATCTTACTTTGCTTCATTTCTTCAAATGATTTCAATGCAATCTCTGTAAGACCCGCTCGACCATATTGCATAATCATGATTGTCCAAGTATCTGGAGTTATTAAGCAACCCTTTCTTCTCATTTCATAGTAAAGACTTCTCATGTGCTTGAAATCTTTCCCGAGCCCGGCGACTTTAATCGCCATGTTGTAAGTTTCTGTAGTATGATTATATCCTGGTTGCTTTCCTACCCAAGCAAAAAATTGTAATGCAGCACAACCATCCAAACTACATTTGCGCAATATCTCGAGAACGAATTCTGTAGTGAACTCGATGCTGCAGTTCTCCAATGCTTTCTTAATTTGTTTCCAATCTGTTGAAGATGACAGGATCCTGTAAACTTCATCAAGATCCTCCTCTCTGTAGTTTCTTGGAAGTGTCTCCGTGTGACAAGTAATACTTGTCGGTTTGGAATGCTCAAAGTTCACCTCCATACGAAGATCGTTTATCTTGGGTGCATCGTCTTCTCTATTTACCTCACATTCCTGTGGAAAGAGTTCAACTTTACTCTTCATTTTCTTTACCTTCTCTAAACTAATCATATCTCCCATTTTCTCCATATAAGACACTACTGATCGAAACAATTTGTCGGGGACAACGATATTCAGTTCGTGCATCTCATTCAGAACCTTGACTACCTCATCGGTTCTTGAAATCCTAAAAAGCTCCCTGATGAAGACTGAAAAGGATTTCCAAGTGGGCTTGTTTTCCATGGTTCTGAAAACGCTCCATGCTTCAGATATATGGTTTTGGCTGACATGACCGGCAACCACAGTCATGATAGCCACCGTATCTAATTCGATCCCTTTTTCCAGCATCTCTTTATAAAGCTCAAAGCCTTTCTCATACTTAGCCAACCTAAAGAGGTGTTGCATTAGTTGTGTGTAAGTCGAAGTAGTAGGCAAATAACCAATTTCTTTCATATTTTGAAACAGATCAAGAGCCTTCAAGATATCATTTTGCCTTAAATACCAATTAATGATAATTCCATATACCTTCCCATCAAGAACAGTTTTCCTCTTCATAATATTAACCAGTTCCAAAGCATCCTCGATCCGATTAGAGCGACAGAGTCCTCCAACCAGAATCTCGAAGTATTTCGGGTCGAGTACTATACCTTTACTATTGAGGTCATGAATGAACTTCAGAGCTTCTTTAATTCTCTTGGAAATGCAAAAACTCTTAAGAATGTAATGATAAACATCATGTTCTTGTACCTTAAACAATGCTACCATGTCCTTTGCAATGTCAAGAACAGAGGCAGTATCTCCTGATCCAGCAAAACAACTCAACAGCACCTTGGACATTTTCATGTCGACAACACTAATTCCTTGCTTGACCATCTCACGGTAGAACTCCATGGCAAGTTCAGGCTTTCCAGCAGCAGAGAGTGAACAGATCAAAGTCTTGTAAACAACCCCATCTATCTCACACCCACTTTCCCTCATCTTACTGTAAACCATCAAGGCTTTTCCAGTTAACTTTGCATTGCCATAGAGAGAGATAAGAATGGTCCAAGTCTTGATATCTTTCTGCAAGGAGTGATACTCCATTTCCTCCACTAACTTCTCAACGAGCTTGAAATCTCTGGCTTCACCAGCAATGCTAAGCACAATGTTGATAACACTAGTTGTACACTGAAACCCATCTCTGGATTTCACCCAATTGAAGAACCCAAGAGCCAAATGAGGGAACTTAAAACACCTCTTAAGAACTTTCTCCACAACCTCAGAACTGAACCTAACATCCAAACTTCCCAATCTCTCCTCCATCGAAACTAACCCATTTCCACCACGAACGGCGGCTGCAACTTGATGTACAACCGAACTAACATCATTTTCTTCCAAGACAACCAACTGGATACCCTCAGTTTCCTGCTCGGCATTTTTACAAACACCTTGGGCGCATAGTAACTGTTCTTCCCCATTCAAAGAGTCCTCCGCCGCACTTTCTTTCAACCCTAAATCCCGAGAAGATATTTTATCATGAACATAACTTTCCGAACCCAAGATCTCAGTAATCTCATTGAAGAGCGACCTGAAGCTTGAAGTTGCAGCCGTTTCCGGGCACTGAGATTCTTGTGTTCCACCTGAACGAGAAGAACTTATTCGTTTTCTTGCAAGAGTGGAGAAACGAAGAACCTGAAACTGTGAGAGATGAAAGCGAAGAAAATTGAGTGTTGAATTTGAATATGGAGATTGGAAGCGGATTAGCTTTCGCATTCTTACAATGATCA

mRNA sequence

TACCTATTGTCAGTTGGTTAAGTATAGCCGTGAGCCTCAAAAGAGAGATTTTTCATTCCTTCTCTATTTCTCGGACAAGCAATTCTAACACCACTCTAAAACCTCGTTAAACCCCGGGAGAGTGGATTCGGTTCCAAACAAATCGGACCGATTCTTCTTCCAATGTCGAAGGCGAAGCTGCGATCTTCACTTCTCGCCGTTCTGCGCTGCAATACAACTCACTCATCCGCCATTAATTACCCAAATGTTTCGAATTCGGCTCTATCAGCCCAAATTCCGTCTAATTGCATCTCACTCTCGCAACTTCCTTCCACCGCAGAATGCTTTCGGCCGTGGCGATCCTCTAGATGTGAATTTCTCAACAATCTCAGGTTTCCCTCGAGGGTTTTTAGTTCTCGATCGGCAGAGGCGTCGGACCTGAAACTTAGGTGCTGGAATTGTGGCGCTGCGGCTCCAACGTCAGTGGTGTTTCTGGTGTGTGATTCTTGTCGGAGCATTCAGCCTTTGGACCAGTCGGTGGATTATTTTCAGATATTTGGCTTGGAAAAGGAGTATGAAATTGGAGATGTCAATCTGGAGAGCCAGTATAAAGATTGGCAGAAGAAATTACATCCCGACTTAGTTCATTCAAAATCAGACAGAGAAAGAGAATATGCTGCTGAACAATCTGCTCGGGTGATCGATGCTTACCGCACTCTTAGTAAGCCATTGTCGAGAGCAATATATATTCTGAAGCTTGAGGGTTTAGATGTCAATGAAGAGGATACAATATCTGAACCAGAGTTGCTAAATGAGATTATGGAAATCAGGGAAGCTGTAGAAGATGCATCGGGATCTCAGGAACTAAACCAGATTCAGTCACAGATGCAAGAGAAACTAAATCATTGGTCTAACACATTTGCGAAAGCATTGCGAAACCGGAACTTCGACGATGCCATCTCGTCTATCCAGCGAATGACCTACTACGAGCGGGTGAAGGAAGAAATTACAAAGAAGCTTTAGTGCAGGAGGTATAATCCATGGAAGCACTAGGTGTAGAATTCAATCTTTATCTACCTCTTGAAATGATTGCTCATATCTCAGTTTTTTAGCACTTAAAAGTTCATAGATTGCTGGTTAATATTGTAGCTGTGAGTAAAAATTTCATATCAGTTTTGTGATTCTGATGTTGCTGAATGCTGGCAATCTCAGTGTGTATCAATAAGGAGACAGAAATTAAGAATGTTAAGAAACAGCCTACATACAATAAATACTCATTAATCTGTCTTGTTTGAGAAATTTTGTGGGCTTATTACAAAATTTTCTATTTATTTTTGTAGGGATTTTTCGATTATAAAGTATACTCATTCATTACAATAAAACTCAATAGACATGTCAAATTTTAGCTTTCTTAAAGCCAAAAGTTGGATTCTTCAACTTCAAATTTAAAAAAAATGGTAAGAAAGCCAACCCCTATGTCTCAATGTATTCTTAAGCAATCTATCAAAACCTACAAACACCTCTAAAGGAACATTCAAACGCTAAAAAAAAGATATCATATTTTAAACTTTCTTCTTCTAATTAAACCCAATTTTTGTTGAAGTACATCACGAGCCAAAATATGCTTACCCTCCCTATTGAGGCCAAAGAAAACTGTCCTGAAGTTAATACTGCTGGGAGCAATCCCACTGTCGAGCATATCAGATACAATCCGCAGGGCTTCTTCAGACCTCCCTGCTTCACACAGACAAGAAATCAGCATTGAATAAGCTTTAAAATCAGGAGAAGGCCCATTTTTCTTTATATAATGGAAAACCTTCCATGCTTCACCAAATTTTCCCATGTTCATGTAGCCATATATCACTGCTGAGTAAGTAGCAATTGTTGGTTCACAACCCTCCTGCAGCATCTTTGCAAGTATCTCCAAAGCTCTTCTTGTTTGATTCTCCTTGAATGAATGAACTATGAATGATGTGTATACGTGCACGGTTGGATTTATACCGACCTGTTTCATAGCGTTCATCTTCGCCAACGCCTCGTCCGTTCGTCCCCTTTGTAGAAGTCCATGAATGATGCTTCCGTAAATGTAGTTATCTAGTTTAGATCTCTCAGTCCCTACCTCTTCTAGTAATGTCAACGCCTCGTCTAACTTCCCGACGCGACAAAGAGCTCGAATATACAAAGAGTATATGAGAGGAACCGTGAAACCGACATTTCGAAGGTTATCTATGCATCGTTTAGCATCTGAAAGTCTATCAAGTTTGCATAAACAACCTAGATAAGTTTCTAACAACTCCTTATCAGGAATGTACTTAGAATGAATCATTTCTTGTAACAAAGTAATGGCTTCATTTACCTTCCTCCGTTTTGATCCGCAAAGGGACATGATCAAATACTTATACGTATTGGCATTTGGCTTGATCTTACTTTGCTTCATTTCTTCAAATGATTTCAATGCAATCTCTGTAAGACCCGCTCGACCATATTGCATAATCATGATTGTCCAAGTATCTGGAGTTATTAAGCAACCCTTTCTTCTCATTTCATAGTAAAGACTTCTCATGTGCTTGAAATCTTTCCCGAGCCCGGCGACTTTAATCGCCATGTTGTAAGTTTCTGTAGTATGATTATATCCTGGTTGCTTTCCTACCCAAGCAAAAAATTGTAATGCAGCACAACCATCCAAACTACATTTGCGCAATATCTCGAGAACGAATTCTGTAGTGAACTCGATGCTGCAGTTCTCCAATGCTTTCTTAATTTGTTTCCAATCTGTTGAAGATGACAGGATCCTGTAAACTTCATCAAGATCCTCCTCTCTGTAGTTTCTTGGAAGTGTCTCCGTGTGACAAGTAATACTTGTCGGTTTGGAATGCTCAAAGTTCACCTCCATACGAAGATCGTTTATCTTGGGTGCATCGTCTTCTCTATTTACCTCACATTCCTGTGGAAAGAGTTCAACTTTACTCTTCATTTTCTTTACCTTCTCTAAACTAATCATATCTCCCATTTTCTCCATATAAGACACTACTGATCGAAACAATTTGTCGGGGACAACGATATTCAGTTCGTGCATCTCATTCAGAACCTTGACTACCTCATCGGTTCTTGAAATCCTAAAAAGCTCCCTGATGAAGACTGAAAAGGATTTCCAAGTGGGCTTGTTTTCCATGGTTCTGAAAACGCTCCATGCTTCAGATATATGGTTTTGGCTGACATGACCGGCAACCACAGTCATGATAGCCACCGTATCTAATTCGATCCCTTTTTCCAGCATCTCTTTATAAAGCTCAAAGCCTTTCTCATACTTAGCCAACCTAAAGAGGTGTTGCATTAGTTGTGTGTAAGTCGAAGTAGTAGGCAAATAACCAATTTCTTTCATATTTTGAAACAGATCAAGAGCCTTCAAGATATCATTTTGCCTTAAATACCAATTAATGATAATTCCATATACCTTCCCATCAAGAACAGTTTTCCTCTTCATAATATTAACCAGTTCCAAAGCATCCTCGATCCGATTAGAGCGACAGAGTCCTCCAACCAGAATCTCGAAGTATTTCGGGTCGAGTACTATACCTTTACTATTGAGGTCATGAATGAACTTCAGAGCTTCTTTAATTCTCTTGGAAATGCAAAAACTCTTAAGAATGTAATGATAAACATCATGTTCTTGTACCTTAAACAATGCTACCATGTCCTTTGCAATGTCAAGAACAGAGGCAGTATCTCCTGATCCAGCAAAACAACTCAACAGCACCTTGGACATTTTCATGTCGACAACACTAATTCCTTGCTTGACCATCTCACGGTAGAACTCCATGGCAAGTTCAGGCTTTCCAGCAGCAGAGAGTGAACAGATCAAAGTCTTGTAAACAACCCCATCTATCTCACACCCACTTTCCCTCATCTTACTGTAAACCATCAAGGCTTTTCCAGTTAACTTTGCATTGCCATAGAGAGAGATAAGAATGGTCCAAGTCTTGATATCTTTCTGCAAGGAGTGATACTCCATTTCCTCCACTAACTTCTCAACGAGCTTGAAATCTCTGGCTTCACCAGCAATGCTAAGCACAATGTTGATAACACTAGTTGTACACTGAAACCCATCTCTGGATTTCACCCAATTGAAGAACCCAAGAGCCAAATGAGGGAACTTAAAACACCTCTTAAGAACTTTCTCCACAACCTCAGAACTGAACCTAACATCCAAACTTCCCAATCTCTCCTCCATCGAAACTAACCCATTTCCACCACGAACGGCGGCTGCAACTTGATGTACAACCGAACTAACATCATTTTCTTCCAAGACAACCAACTGGATACCCTCAGTTTCCTGCTCGGCATTTTTACAAACACCTTGGGCGCATAGTAACTGTTCTTCCCCATTCAAAGAGTCCTCCGCCGCACTTTCTTTCAACCCTAAATCCCGAGAAGATATTTTATCATGAACATAACTTTCCGAACCCAAGATCTCAGTAATCTCATTGAAGAGCGACCTGAAGCTTGAAGTTGCAGCCGTTTCCGGGCACTGAGATTCTTGTGTTCCACCTGAACGAGAAGAACTTATTCGTTTTCTTGCAAGAGTGGAGAAACGAAGAACCTGAAACTGTGAGAGATGAAAGCGAAGAAAATTGAGTGTTGAATTTGAATATGGAGATTGGAAGCGGATTAGCTTTCGCATTCTTACAATGATCA

Coding sequence (CDS)

ATGTCGAAGGCGAAGCTGCGATCTTCACTTCTCGCCGTTCTGCGCTGCAATACAACTCACTCATCCGCCATTAATTACCCAAATGTTTCGAATTCGGCTCTATCAGCCCAAATTCCGTCTAATTGCATCTCACTCTCGCAACTTCCTTCCACCGCAGAATGCTTTCGGCCGTGGCGATCCTCTAGATGTGAATTTCTCAACAATCTCAGGTTTCCCTCGAGGGTTTTTAGTTCTCGATCGGCAGAGGCGTCGGACCTGAAACTTAGGTGCTGGAATTGTGGCGCTGCGGCTCCAACGTCAGTGGTGTTTCTGGTGTGTGATTCTTGTCGGAGCATTCAGCCTTTGGACCAGTCGGTGGATTATTTTCAGATATTTGGCTTGGAAAAGGAGTATGAAATTGGAGATGTCAATCTGGAGAGCCAGTATAAAGATTGGCAGAAGAAATTACATCCCGACTTAGTTCATTCAAAATCAGACAGAGAAAGAGAATATGCTGCTGAACAATCTGCTCGGGTGATCGATGCTTACCGCACTCTTAGTAAGCCATTGTCGAGAGCAATATATATTCTGAAGCTTGAGGGTTTAGATGTCAATGAAGAGGATACAATATCTGAACCAGAGTTGCTAAATGAGATTATGGAAATCAGGGAAGCTGTAGAAGATGCATCGGGATCTCAGGAACTAAACCAGATTCAGTCACAGATGCAAGAGAAACTAAATCATTGGTCTAACACATTTGCGAAAGCATTGCGAAACCGGAACTTCGACGATGCCATCTCGTCTATCCAGCGAATGACCTACTACGAGCGGGTGAAGGAAGAAATTACAAAGAAGCTTTAG

Protein sequence

MSKAKLRSSLLAVLRCNTTHSSAINYPNVSNSALSAQIPSNCISLSQLPSTAECFRPWRSSRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL

Homology

[Close]

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot
Match: HSC20_MOUSE (Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Mus musculus GN=Hscb PE=1 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-26
Identity = 62/204 (30.39%), Postives = 111/204 (54.41%), Query Frame = 1


Query: 74  RVFSSRSAEASDLKLRCWNCGAAAPTSVVF-LVCDSCRSIQPLDQSVDYFQIFGLEKEYE 133
           R+  S +A    +  +CWNCG A          C  CR++QP D + DYF +    + + 
Sbjct: 24  RLLGSNAAAGKSIAPQCWNCGHAREAGCGDEFFCSHCRALQPPDPTRDYFSLMNCNRSFR 83

Query: 134 IGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKPLSRAIYILKL 193
           +    L+ +Y+  Q+ +HPD    KS  E+ ++ + S  V DAY+TL  PL+R +Y+LKL
Sbjct: 84  VDVTKLQHRYQQLQRLVHPDFFSQKSQTEKHFSDKHSTLVNDAYKTLQAPLTRGLYLLKL 143

Query: 194 EGLDVNE-EDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHWSNTFAKALR 253
           +G+++ E  D  ++ + L EIMEI E + DA     + +I++ ++ K   +++    A  
Sbjct: 144 QGIEIPEGTDYKADSQFLVEIMEINERLADAQSEAAMEEIEATVRAKQKEFTDNINSAFE 203

Query: 254 NRNFDDAISSIQRMTYYERVKEEI 276
             +F+ A   + +M Y+  ++E+I
Sbjct: 204 QGDFEKAKELLTKMRYFSNIEEKI 227

[Close]

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot
Match: HSC20_HUMAN (Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=HSCB PE=1 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 60/192 (31.25%), Postives = 106/192 (55.21%), Query Frame = 1


Query: 89  RCWNCGAA-APTSVVFLVCDSCRSIQPLDQSVDYFQIFGLEKEYEIGDVNLESQYKDWQK 148
           RCWNCG    P       C  CR++Q  D + DYF +    + + +    L+ +Y+  Q+
Sbjct: 40  RCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQR 99

Query: 149 KLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKPLSRAIYILKLEGLDVNEE-DTISEP 208
            +HPD    +S  E++++ + S  V DAY+TL  PLSR +Y+LKL G+++ E  D   + 
Sbjct: 100 LVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDR 159

Query: 209 ELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHWSNTFAKALRNRNFDDAISSIQRMT 268
           + L EIMEI E + +A     + +I+S ++ K   +++  + A    +F++A   + +M 
Sbjct: 160 QFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAFEQDDFEEAKEILTKMR 219

Query: 269 YYERVKEEITKK 279
           Y+  ++E+I  K
Sbjct: 220 YFSNIEEKIKLK 231

[Close]

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot
Match: HSCB_VIBC3 (Co-chaperone protein HscB homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=hscB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-16
Identity = 51/164 (31.10%), Postives = 94/164 (57.32%), Query Frame = 1


Query: 119 VDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRT 178
           ++YF++FGL  ++E+    L SQ++  QK+ HPD   + S+R+R  A +Q+A++ DAY+T
Sbjct: 1   MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQT 60

Query: 179 LSKPLSRAIYILKLEGLDVN-EEDTISEPELLNEIMEIREAVEDASGSQE----LNQIQS 238
           L  PL RA Y+L L+G+++N E+ T+ +P  L E ME+RE +E  +   +    L    +
Sbjct: 61  LKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDT 120

Query: 239 QMQEKLNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITK 278
           ++     H+       L    +  A   I+++ +  ++K E+ +
Sbjct: 121 KVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVER 164

[Close]

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot
Match: HSCB_VIBCH (Co-chaperone protein HscB homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=hscB PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-16
Identity = 51/164 (31.10%), Postives = 94/164 (57.32%), Query Frame = 1


Query: 119 VDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRT 178
           ++YF++FGL  ++E+    L SQ++  QK+ HPD   + S+R+R  A +Q+A++ DAY+T
Sbjct: 1   MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQT 60

Query: 179 LSKPLSRAIYILKLEGLDVN-EEDTISEPELLNEIMEIREAVEDASGSQE----LNQIQS 238
           L  PL RA Y+L L+G+++N E+ T+ +P  L E ME+RE +E  +   +    L    +
Sbjct: 61  LKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTACADPEAALVAFDT 120

Query: 239 QMQEKLNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITK 278
           ++     H+       L    +  A   I+++ +  ++K E+ +
Sbjct: 121 KVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVER 164

[Close]

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot
Match: HSCB_SERP5 (Co-chaperone protein HscB OS=Serratia proteamaculans (strain 568) GN=hscB PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-16
Identity = 50/162 (30.86%), Postives = 95/162 (58.64%), Query Frame = 1


Query: 119 VDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRT 178
           +DYF +FGL   Y +    L S+Y+D Q++ HPD   S+ +RER  A +Q+A + +AY+T
Sbjct: 1   MDYFTLFGLPVRYPVDGSLLASRYQDLQRQFHPDRFASQPERERLMALQQAATINEAYQT 60

Query: 179 LSKPLSRAIYILKLEGLDV-NEEDTISEPELLNEIMEIREAVE----DASGSQELNQIQS 238
           L  PL RA Y+L L G D+ NE+ T+ +   L E +E+RE ++     A    +L    +
Sbjct: 61  LKHPLKRAEYMLSLHGFDLGNEQHTMRDTAFLMEQLELREELDAIERKADAQTQLASFGA 120

Query: 239 QMQEKLNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEI 276
           ++ E +   S    + L ++ + DA  +++++ + +++++++
Sbjct: 121 RVNETVKQRSALMIQQLDSQQWMDAADTVRKLRFLDKLQQQV 162

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL
Match: A0A0A0LBM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782800 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 2.1e-121
Identity = 237/279 (84.95%), Postives = 250/279 (89.61%), Query Frame = 1


Query: 1   MSKAKLRSSLLAVLRCNTTHSSAINYPNVSNSALSAQIPSNCISLSQLPSTAECFRPWRS 60
           M K KLRSSL  VLR NT  SSAI +PNVSNSALS+QI S    +S LPS AEC RP   
Sbjct: 1   MLKMKLRSSLFYVLRTNTPLSSAIYFPNVSNSALSSQISS----ISLLPSIAECSRPSPP 60

Query: 61  SRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVD 120
           + CEFL+NL F SRVF SRSAEAS LK  CWNCGA AP+S VFLVCDSCRSIQP+DQ VD
Sbjct: 61  TACEFLDNLSFSSRVFCSRSAEASVLKPGCWNCGAVAPSSAVFLVCDSCRSIQPVDQLVD 120

Query: 121 YFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180
           YFQIFGLEKEYEIGDVNLES+YKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS
Sbjct: 121 YFQIFGLEKEYEIGDVNLESKYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180

Query: 181 KPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN 240
           KPLSRAIYILKLEG+DV+EEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN
Sbjct: 181 KPLSRAIYILKLEGVDVDEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN 240

Query: 241 HWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           HWSNTFAKALR+RNF+DA+SSIQRMTYYERVKEEITKKL
Sbjct: 241 HWSNTFAKALRDRNFNDAVSSIQRMTYYERVKEEITKKL 275

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL
Match: D7U8Q6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00960 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.7e-76
Identity = 160/255 (62.75%), Postives = 200/255 (78.43%), Query Frame = 1


Query: 26  YPNVS-NSALSAQIPSNCISLSQLPSTAECFRPWRSSRCEFLNNLRFPSRVFSSRSAEAS 85
           +P+ S NS L+  IPS+ I  S   STA+  R + SS  +FL +L+F  ++ S++SAE  
Sbjct: 18  FPSFSLNSTLN--IPSSTIFSSPCSSTAQYSRVFWSSSYDFLGSLKFSRKLCSAQSAE-- 77

Query: 86  DLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYFQIFGLEKEYEIGDVNLESQYKD 145
            + +RCWNC AAA T+  FL CDSCRS+QP+D SVDYFQIFGLEK+YE+ D NLE +YKD
Sbjct: 78  QVHVRCWNCKAAAQTTP-FLACDSCRSVQPVDPSVDYFQIFGLEKKYELEDNNLEGKYKD 137

Query: 146 WQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKPLSRAIYILKLEGLDVNEEDTIS 205
           WQKKLHPDLVHSKS+ E+EYAAEQSARVIDAY+TLSKPL+RAIYILKLEG+D +EE TIS
Sbjct: 138 WQKKLHPDLVHSKSEEEKEYAAEQSARVIDAYQTLSKPLARAIYILKLEGVDFDEEQTIS 197

Query: 206 EPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHWSNTFAKALRNRNFDDAISSIQR 265
           +   L EIMEIREAVE+A  S+ L QIQSQ+QEKL HWS +F+ A ++  F++A+ S+QR
Sbjct: 198 DISFLAEIMEIREAVEEAVNSETLLQIQSQVQEKLKHWSQSFSNAFQSGKFEEAVISVQR 257

Query: 266 MTYYERVKEEITKKL 280
           MTYY RV +EI KKL
Sbjct: 258 MTYYVRVNDEIMKKL 267

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL
Match: V4SRE2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012448mg PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.9e-76
Identity = 147/217 (67.74%), Postives = 175/217 (80.65%), Query Frame = 1


Query: 63  CEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYF 122
           C +  NL+F  R F S SAE +     CWNC  A P +  FL C+SCRS+QP+D SVDYF
Sbjct: 59  CYYFENLKFSGRSFCSESAEKAS-NATCWNCNEA-PKAAPFLFCESCRSVQPVDHSVDYF 118

Query: 123 QIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKP 182
           QIFGL K+YEIG+  LE +YKDWQK++HPDLVHSKS++EREYAAEQS RVI+AYRTL+ P
Sbjct: 119 QIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNP 178

Query: 183 LSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHW 242
           L+RAIYIL+LEG++VNEE+T+SEPELL EIMEIREAVEDA+ SQ L +IQSQMQEKL HW
Sbjct: 179 LARAIYILRLEGVEVNEEETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHW 238

Query: 243 SNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
            N+FA A +NRNFD+A   I+RMTYY RV EEI KKL
Sbjct: 239 GNSFANAYQNRNFDEARVCIRRMTYYHRVNEEIAKKL 273

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL
Match: A0A061EV47_THECC (DNAJ heat shock N-terminal domain-containing protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_023091 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.1e-75
Identity = 151/217 (69.59%), Postives = 177/217 (81.57%), Query Frame = 1


Query: 64  EFLNNLRFPSRVFSSRSAEASDLKL-RCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYF 123
           +FL NL+F ++ F S+SA   D    RCWNC A A     FL CDSCRSIQP+D SVDYF
Sbjct: 20  DFLGNLKFSAKSFCSQSAAKVDATTKRCWNCDAVAAGMAPFLYCDSCRSIQPVDFSVDYF 79

Query: 124 QIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKP 183
           QIFGLEK+YEI    LE +YKDWQKKLHPDLVHSKS++EREYAAEQSARVIDAYRTLSKP
Sbjct: 80  QIFGLEKKYEIEVDGLEGKYKDWQKKLHPDLVHSKSEKEREYAAEQSARVIDAYRTLSKP 139

Query: 184 LSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHW 243
           L+RAIYIL+LEG+ V+EE T+S+PELL EIMEIREAVE+A  SQ LNQIQSQM+EKL   
Sbjct: 140 LARAIYILRLEGVLVDEEQTVSDPELLTEIMEIREAVEEAMDSQALNQIQSQMKEKLEGS 199

Query: 244 SNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           S++FA A R+RNFD+A++ IQ+MTYY+R  EEI KKL
Sbjct: 200 SSSFANAYRSRNFDEAVTCIQKMTYYQRANEEILKKL 236

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL
Match: A0A061EVT7_THECC (DNAJ heat shock N-terminal domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_023091 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.1e-75
Identity = 151/217 (69.59%), Postives = 177/217 (81.57%), Query Frame = 1


Query: 64  EFLNNLRFPSRVFSSRSAEASDLKL-RCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYF 123
           +FL NL+F ++ F S+SA   D    RCWNC A A     FL CDSCRSIQP+D SVDYF
Sbjct: 56  DFLGNLKFSAKSFCSQSAAKVDATTKRCWNCDAVAAGMAPFLYCDSCRSIQPVDFSVDYF 115

Query: 124 QIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKP 183
           QIFGLEK+YEI    LE +YKDWQKKLHPDLVHSKS++EREYAAEQSARVIDAYRTLSKP
Sbjct: 116 QIFGLEKKYEIEVDGLEGKYKDWQKKLHPDLVHSKSEKEREYAAEQSARVIDAYRTLSKP 175

Query: 184 LSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHW 243
           L+RAIYIL+LEG+ V+EE T+S+PELL EIMEIREAVE+A  SQ LNQIQSQM+EKL   
Sbjct: 176 LARAIYILRLEGVLVDEEQTVSDPELLTEIMEIREAVEEAMDSQALNQIQSQMKEKLEGS 235

Query: 244 SNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           S++FA A R+RNFD+A++ IQ+MTYY+R  EEI KKL
Sbjct: 236 SSSFANAYRSRNFDEAVTCIQKMTYYQRANEEILKKL 272

[Close]

BLAST of Cp4.1LG03g00300.1 vs. TAIR10
Match: AT5G06410.1 (AT5G06410.1 DNAJ heat shock N-terminal domain-containing protein)

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-69
Identity = 138/240 (57.50%), Postives = 171/240 (71.25%), Query Frame = 1


Query: 40  SNCISLSQLPSTAECFRPWRSSRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPT 99
           + C SL+ + S  +  R            LRF  RVF S S         CWNCG  A  
Sbjct: 23  NQCNSLATIQSQTQLPRESLQHHSSAEGRLRFSGRVFCSESGAG------CWNCGEKA-- 82

Query: 100 SVVFLVCDSCRSIQPLDQSVDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSD 159
              FL C+SCRSIQP+D SVDYFQIFGLEK+YEI   +LE +YKDWQKKLHPDLVH+KS 
Sbjct: 83  --AFLFCNSCRSIQPVDDSVDYFQIFGLEKKYEIDPGSLEGKYKDWQKKLHPDLVHNKSK 142

Query: 160 REREYAAEQSARVIDAYRTLSKPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAV 219
           +ER+YAAEQSA+V +A RTL+K LSRA+YI+KL G++VNEE+TI++P LL EIME+REA+
Sbjct: 143 KERDYAAEQSAKVTEACRTLTKRLSRAMYIMKLNGVNVNEEETITDPTLLMEIMELREAI 202

Query: 220 EDASGSQELNQIQSQMQEKLNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 279
            +A  S  LNQI+SQ+QEKL  WS++F +A  ++ FDDA+  IQRMTYYER  EEI KKL
Sbjct: 203 SEADDSTSLNQIRSQVQEKLKQWSDSFVEAFESQKFDDAVKCIQRMTYYERACEEILKKL 252

[Close]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr
Match: gi|659084555|ref|XP_008442950.1| (PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Cucumis melo])

HSP 1 Score: 455.3 bits (1170), Expect = 7.7e-125
Identity = 241/279 (86.38%), Postives = 254/279 (91.04%), Query Frame = 1


Query: 1   MSKAKLRSSLLAVLRCNTTHSSAINYPNVSNSALSAQIPSNCISLSQLPSTAECFRPWRS 60
           M K KLRSSL  VLR NT  SSAIN+PNVSNSALS QI S     SQLP+ +EC RP  S
Sbjct: 1   MLKTKLRSSLFYVLRTNTPLSSAINFPNVSNSALSPQISS----FSQLPTISECSRPSPS 60

Query: 61  SRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVD 120
           + CEFL+NL F SRVF SRSAEASDLK  CWNCGA AP+SVVFLVCDSCRSIQP+DQSVD
Sbjct: 61  TACEFLDNLSFSSRVFCSRSAEASDLKPGCWNCGAVAPSSVVFLVCDSCRSIQPVDQSVD 120

Query: 121 YFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180
           YFQIFGLEKEYEIGDVNLES+YKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS
Sbjct: 121 YFQIFGLEKEYEIGDVNLESKYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180

Query: 181 KPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN 240
           KPLSRAIYILKLEG+DV+EEDTISEPELLNEIMEIREAVEDASGS+ELNQIQSQMQEKLN
Sbjct: 181 KPLSRAIYILKLEGVDVDEEDTISEPELLNEIMEIREAVEDASGSRELNQIQSQMQEKLN 240

Query: 241 HWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           HWSNTFAKALRNRNF+DA+SSIQRMTYYERVKEEITKKL
Sbjct: 241 HWSNTFAKALRNRNFNDAVSSIQRMTYYERVKEEITKKL 275

[Close]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr
Match: gi|449437496|ref|XP_004136528.1| (PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 3.0e-121
Identity = 237/279 (84.95%), Postives = 250/279 (89.61%), Query Frame = 1


Query: 1   MSKAKLRSSLLAVLRCNTTHSSAINYPNVSNSALSAQIPSNCISLSQLPSTAECFRPWRS 60
           M K KLRSSL  VLR NT  SSAI +PNVSNSALS+QI S    +S LPS AEC RP   
Sbjct: 1   MLKMKLRSSLFYVLRTNTPLSSAIYFPNVSNSALSSQISS----ISLLPSIAECSRPSPP 60

Query: 61  SRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVD 120
           + CEFL+NL F SRVF SRSAEAS LK  CWNCGA AP+S VFLVCDSCRSIQP+DQ VD
Sbjct: 61  TACEFLDNLSFSSRVFCSRSAEASVLKPGCWNCGAVAPSSAVFLVCDSCRSIQPVDQLVD 120

Query: 121 YFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180
           YFQIFGLEKEYEIGDVNLES+YKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS
Sbjct: 121 YFQIFGLEKEYEIGDVNLESKYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLS 180

Query: 181 KPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN 240
           KPLSRAIYILKLEG+DV+EEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN
Sbjct: 181 KPLSRAIYILKLEGVDVDEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLN 240

Query: 241 HWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           HWSNTFAKALR+RNF+DA+SSIQRMTYYERVKEEITKKL
Sbjct: 241 HWSNTFAKALRDRNFNDAVSSIQRMTYYERVKEEITKKL 275

[Close]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr
Match: gi|1009164251|ref|XP_015900398.1| (PREDICTED: co-chaperone protein HscB-like [Ziziphus jujuba])

HSP 1 Score: 293.5 bits (750), Expect = 3.9e-76
Identity = 168/281 (59.79%), Postives = 199/281 (70.82%), Query Frame = 1


Query: 1   MSKAKLRSSLLAVLR--CNTTHSSAINYPNVSNSALSAQIPSNCISLSQLPSTAECFRPW 60
           MSK KL   L +++R     T    I+    +   L++  PSN  +    PS        
Sbjct: 1   MSKQKLWIPLSSIVRRALRLTQRVPISSAARTQPILASFSPSNSENCGLFPSRG------ 60

Query: 61  RSSRCEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQS 120
                +FL + +   R   S  +    +  +CWNC A A  +  FLVC SCR IQP+DQS
Sbjct: 61  ----FDFLGSSKLSGRCSLSTQSAEKVVDAKCWNCNAEAEAAP-FLVCRSCRCIQPVDQS 120

Query: 121 VDYFQIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRT 180
           VDYF+IFGLEK+Y+I D NLE +YKDWQKKLHPDLVHSKS+REREYAAEQSARVIDA+RT
Sbjct: 121 VDYFRIFGLEKKYDIEDDNLERKYKDWQKKLHPDLVHSKSEREREYAAEQSARVIDAFRT 180

Query: 181 LSKPLSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEK 240
           L+KPLSRAIYILKLEG+DV+EE+TISEP+LL EIMEIREAVE+A+ SQ L Q+QSQMQEK
Sbjct: 181 LNKPLSRAIYILKLEGVDVDEEETISEPDLLAEIMEIREAVEEAADSQALKQLQSQMQEK 240

Query: 241 LNHWSNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
           L HWSN FA A RNRNF DA  SI+RMTYYERV EEI KKL
Sbjct: 241 LEHWSNLFAIAFRNRNFGDARKSIRRMTYYERVNEEIVKKL 270

[Close]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr
Match: gi|359481056|ref|XP_003632561.1| (PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Vitis vinifera])

HSP 1 Score: 293.5 bits (750), Expect = 3.9e-76
Identity = 160/255 (62.75%), Postives = 200/255 (78.43%), Query Frame = 1


Query: 26  YPNVS-NSALSAQIPSNCISLSQLPSTAECFRPWRSSRCEFLNNLRFPSRVFSSRSAEAS 85
           +P+ S NS L+  IPS+ I  S   STA+  R + SS  +FL +L+F  ++ S++SAE  
Sbjct: 18  FPSFSLNSTLN--IPSSTIFSSPCSSTAQYSRVFWSSSYDFLGSLKFSRKLCSAQSAE-- 77

Query: 86  DLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYFQIFGLEKEYEIGDVNLESQYKD 145
            + +RCWNC AAA T+  FL CDSCRS+QP+D SVDYFQIFGLEK+YE+ D NLE +YKD
Sbjct: 78  QVHVRCWNCKAAAQTTP-FLACDSCRSVQPVDPSVDYFQIFGLEKKYELEDNNLEGKYKD 137

Query: 146 WQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKPLSRAIYILKLEGLDVNEEDTIS 205
           WQKKLHPDLVHSKS+ E+EYAAEQSARVIDAY+TLSKPL+RAIYILKLEG+D +EE TIS
Sbjct: 138 WQKKLHPDLVHSKSEEEKEYAAEQSARVIDAYQTLSKPLARAIYILKLEGVDFDEEQTIS 197

Query: 206 EPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHWSNTFAKALRNRNFDDAISSIQR 265
           +   L EIMEIREAVE+A  S+ L QIQSQ+QEKL HWS +F+ A ++  F++A+ S+QR
Sbjct: 198 DISFLAEIMEIREAVEEAVNSETLLQIQSQVQEKLKHWSQSFSNAFQSGKFEEAVISVQR 257

Query: 266 MTYYERVKEEITKKL 280
           MTYY RV +EI KKL
Sbjct: 258 MTYYVRVNDEIMKKL 267

[Close]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr
Match: gi|567874883|ref|XP_006430031.1| (hypothetical protein CICLE_v10012448mg [Citrus clementina])

HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75
Identity = 147/217 (67.74%), Postives = 175/217 (80.65%), Query Frame = 1


Query: 63  CEFLNNLRFPSRVFSSRSAEASDLKLRCWNCGAAAPTSVVFLVCDSCRSIQPLDQSVDYF 122
           C +  NL+F  R F S SAE +     CWNC  A P +  FL C+SCRS+QP+D SVDYF
Sbjct: 59  CYYFENLKFSGRSFCSESAEKAS-NATCWNCNEA-PKAAPFLFCESCRSVQPVDHSVDYF 118

Query: 123 QIFGLEKEYEIGDVNLESQYKDWQKKLHPDLVHSKSDREREYAAEQSARVIDAYRTLSKP 182
           QIFGL K+YEIG+  LE +YKDWQK++HPDLVHSKS++EREYAAEQS RVI+AYRTL+ P
Sbjct: 119 QIFGLGKKYEIGNEKLEGKYKDWQKRIHPDLVHSKSEKEREYAAEQSGRVIEAYRTLTNP 178

Query: 183 LSRAIYILKLEGLDVNEEDTISEPELLNEIMEIREAVEDASGSQELNQIQSQMQEKLNHW 242
           L+RAIYIL+LEG++VNEE+T+SEPELL EIMEIREAVEDA+ SQ L +IQSQMQEKL HW
Sbjct: 179 LARAIYILRLEGVEVNEEETVSEPELLMEIMEIREAVEDAADSQTLKEIQSQMQEKLIHW 238

Query: 243 SNTFAKALRNRNFDDAISSIQRMTYYERVKEEITKKL 280
            N+FA A +NRNFD+A   I+RMTYY RV EEI KKL
Sbjct: 239 GNSFANAYQNRNFDEARVCIRRMTYYHRVNEEIAKKL 273

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g00300.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HSC20_MOUSE	3.7e-26	30.39	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Mus musculus GN=...	[more]
HSC20_HUMAN	1.2e-24	31.25	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=...	[more]
HSCB_VIBC3	2.6e-16	31.10	Co-chaperone protein HscB homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39...	[more]
HSCB_VIBCH	2.6e-16	31.10	Co-chaperone protein HscB homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39...	[more]
HSCB_SERP5	2.6e-16	30.86	Co-chaperone protein HscB OS=Serratia proteamaculans (strain 568) GN=hscB PE=3 S...	[more]

BLAST of Cp4.1LG03g00300.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBM6_CUCSA	2.1e-121	84.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782800 PE=4 SV=1	[more]
D7U8Q6_VITVI	2.7e-76	62.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0032g00960 PE=3 SV=...	[more]
V4SRE2_9ROSI	7.9e-76	67.74	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012448mg PE=4 SV=1	[more]
A0A061EV47_THECC	5.1e-75	69.59	DNAJ heat shock N-terminal domain-containing protein, putative isoform 2 (Fragme...	[more]
A0A061EVT7_THECC	5.1e-75	69.59	DNAJ heat shock N-terminal domain-containing protein, putative isoform 1 OS=Theo...	[more]

BLAST of Cp4.1LG03g00300.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06410.1	3.7e-69	57.50	DNAJ heat shock N-terminal domain-containing protein	[more]

BLAST of Cp4.1LG03g00300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084555\|ref\|XP_008442950.1\|	7.7e-125	86.38	PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Cucumis...	[more]
gi\|449437496\|ref\|XP_004136528.1\|	3.0e-121	84.95	PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Cucumis...	[more]
gi\|1009164251\|ref\|XP_015900398.1\|	3.9e-76	59.79	PREDICTED: co-chaperone protein HscB-like [Ziziphus jujuba]	[more]
gi\|359481056\|ref\|XP_003632561.1\|	3.9e-76	62.75	PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Vitis v...	[more]
gi\|567874883\|ref\|XP_006430031.1\|	1.1e-75	67.74	hypothetical protein CICLE_v10012448mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0051259	protein oligomerization
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0051087	chaperone binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009073	HscB_oligo_C
IPR004640	HscB
IPR001623	DnaJ_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0051259	protein oligomerization
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051087	chaperone binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG03g00300	Cp4.1LG03g00300	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g00300.1	Cp4.1LG03g00300.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g00300.1:five_prime_utr:001	Cp4.1LG03g00300.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g00300.1:cds:006	Cp4.1LG03g00300.1:cds:006	CDS
Cp4.1LG03g00300.1:cds:005	Cp4.1LG03g00300.1:cds:005	CDS
Cp4.1LG03g00300.1:cds:004	Cp4.1LG03g00300.1:cds:004	CDS
Cp4.1LG03g00300.1:cds:003	Cp4.1LG03g00300.1:cds:003	CDS
Cp4.1LG03g00300.1:cds:002	Cp4.1LG03g00300.1:cds:002	CDS
Cp4.1LG03g00300.1:cds:001	Cp4.1LG03g00300.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG03g00300.1:three_prime_utr:001	Cp4.1LG03g00300.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 85..191 score: 1.0
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 119..184 score: 2.
IPR001623	DnaJ domain	PROFILE	PS50076	DNAJ_2	coord: 120..192 score: 9
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 119..191 score: 6.67
IPR004640	Co-chaperone Hsc20	PANTHER	PTHR14021	FAMILY NOT NAMED	coord: 89..279 score: 3.2
IPR004640	Co-chaperone Hsc20	TIGRFAMs	TIGR00714	TIGR00714	coord: 131..277 score: 2.2
IPR009073	Co-chaperone HscB, C-terminal oligomerisation domain	GENE3D	G3DSA:1.20.1280.20		coord: 198..278 score: 8.6
IPR009073	Co-chaperone HscB, C-terminal oligomerisation domain	PFAM	PF07743	HSCB_C	coord: 205..275 score: 7.0
IPR009073	Co-chaperone HscB, C-terminal oligomerisation domain	unknown	SSF47144	HSC20 (HSCB), C-terminal oligomerisation domain	coord: 197..278 score: 1.57