Cp4.1LG02g11950.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g11950.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Gamma-interferon-inducible lysosomal thiol reductase
Location	Cp4.1LG02 : 10919916 .. 10922692 (+)
Sequence length	1125

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCCTTACGCGGGTCGTGGACATGGAAGATTCCTCAAGTTTAGCTTGCTTCCACATCCACAACAAGAATTAAATGTTTATTTAACAAAATTAGATTCATTCTTCCATTGCTATTGAATCTCTGGAAGCCATGGATTCTCCGCCTAAACTCTGTTCCCTCGCTTACATTTCTTATCTGCTGCTACTCTTGCTTTGCTCGTTCTTGTTTCCTGTTTCATCTACTTCATACTCCATAGCCACAACCTCCAATTATGGCACCGGAAAAGTTTCGCTCCAACTCTACTACGAGTCTCTCTGTCCTTACAGCGCCAATTTCATTGTGAACTATCTGCCAAAGCTTTTCGATGATGATCTCATCTCCATTGTTGATCTCAGGCTCGTCCCTTATGGTAACGCCAGGGTTGGTCGCAACGATTCCATCACTTGTCAGGTCCTCCGTTTAATTCGTTCATTAGATTCGTTGTTTTCTTTCTTGACGATTTCTGTTTCGGTTAATTACTAAATAAATGGCGTATTTCGTTTGTTTGCATGCTTGATTTGACTTCAGTGTTCTGTTGATTTAGGTATTTGGTTATGGTTTGTTCAGGGATGAGAAATTGGTAGTTGTTCGGAACCTTAGGTTTAAAATTGAATATGCAATTATGCGCGATTCTTCCGAATCTGATATGCTTTTGTTTATTGTATATTGTTCAACATAATAGCTTCTTCCTTGTTTACCATATTGTTCTTTGAAAGTCTCTCCGGGCTTATAATACGAATCTTGATATTGTTCTTTGAAAGTCTCTCCAATTTTATCATCAGTAAATCTGTTTATATTTCGAGATTGATATTCCTCCCTTACCTGATAGCTTAAGCTGTTTGATGTCCATGTTAGAGTTCTCTTTTCTGTTTCGTTTTAAGTTGGTGTTCATGATTTTATACTCTTTCTACACAGTTTAACTTGCCTATGGATGGCTGGATGTGCTTGCATCCATATAAACTGTCTAATAAACTTGTACTGTGTGGTTGTAATTTCAGCATGGCCCGAATGAATGCCTATTGAACACTGTGGAAGCCTGTGCCATTAACGCCTGGCCAGAGCTGGTAAGACTTCTGATGGGAGCATGACACTAGTCAGTTTCTTACAAAACCCTTTCCTTGTTTATTACATAGTTTCCATGTGTCATTATGATCANGCATGTAACTATGTGTCATTATGATCATTGATGATGGGTTTTTTCCATTTGCTTCGATCTGTACAAAGTTCTCCTTACTAATATTATTTTGCTACCCAATAATCTAATGGAATTGGTGGTGGATTGTCTGTTTATATATTTTTCTCTAATAGTCTTCTTGGAATTAAATGCTGAAACTCATTTCTTATATTACATATCTTTCAAAGTGAGTGAGTTGGAATTATGGGGATAAAAGTTCTCATGTACTTGTACTGCAGGATGGTCATTTTCCTTTCATTTACTGCATCGAGTATCTGGTGTCCAAACGGAAGTACACCCAGTGGGAGTCATGTTTTGAGAAGTTGGGGTTGAATCCCAAGCCAATCAATGAATGCTACCATACTGAGCTTGGGAAAATGGTGAGTTGTTTTAAATTACTCGGTTCAGATTTTTGTGTTAGTTCAAGTTTCATATATTGATAAGATATAACATTGTATAGAATACAAAGACTATGTAATGGTACCTACTCAACTAATCCTGTACTGCTGCAACGGGTTCTTAGTTTCCAACATATCTAGCTGTTATGATTTTCGACTGACTGAAGATTTCACAGATTTCATTGACTGAGCATTAGGTTCATAATCAGTTCCCGGTCTCTAGGTTGTGATTGGGTAAACAAACATAGAGATTATCGACAATTCAATATGGAATCAAATGTTCTATGTGTGATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGAGTGTGGAAACCTCCCATTGCAGACGCATTTTAAAAACCTTGAGGGAAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATCTACTAGCGGTAGGCATGCGTCATTACATTCTATAATTTGATTTTTATCATCTTCGTGCAGCTTGAACTGAAATATGCTGCTGAAACCGGCAATCTTGAGCCTCCTCATAAGTACGTGCCTTGGGTTGTTGTAGATGGGAAACCACTTTATGAGGTTTGTTTCCTTCTTTCTGTTATGCTCACTAGTGTACGTACAAATTAACTGTTAAAATATCATCACTAGCCCAATAGAGTTAAGCCCAATAATGTACGAGCCATTGTATATTTATCTCAGTAGATATTTTAGAATAAAGATACTAGAGATTTTAGAGTTGTGTTCAATATTAACTGCATAAAGGTCTAGGCTTGAGTCATACAAACATCTACTTATAAGGATTATTATAACATTCCCTTGCTATAGGACTATGAAAACTTCATAAACTACATCTGTGAGGCGTATAAAGGACCTGTTCTGCCAAGTGCCTGTCATGCTTCGTCCATTAGTGCCATTTGAAGATGAAAAGCCAAGTCCAGCCTCCCAAATAGTGCAAGAAGACAGAGATGATGATAACGTTGATATAATAAACAAGAATACAATCGAGGTGATAGTGTTATTTATTCTACTGCTTGAATGATGTCACATTGTATGTACCCCCACACTCTGAAATCGTTCGGTTTAATTTATGGATAATGCACTTTTAGTAGTGAGATATGAATCGTTATCTATTTGGTCCATGAAATTTCAATAGAGACACTTTAGCCTCTTGAGTTTGCGAAGTCATTTTAAATGGT

mRNA sequence

TGTCCTTACGCGGGTCGTGGACATGGAAGATTCCTCAAGTTTAGCTTGCTTCCACATCCACAACAAGAATTAAATGTTTATTTAACAAAATTAGATTCATTCTTCCATTGCTATTGAATCTCTGGAAGCCATGGATTCTCCGCCTAAACTCTGTTCCCTCGCTTACATTTCTTATCTGCTGCTACTCTTGCTTTGCTCGTTCTTGTTTCCTGTTTCATCTACTTCATACTCCATAGCCACAACCTCCAATTATGGCACCGGAAAAGTTTCGCTCCAACTCTACTACGAGTCTCTCTGTCCTTACAGCGCCAATTTCATTGTGAACTATCTGCCAAAGCTTTTCGATGATGATCTCATCTCCATTGTTGATCTCAGGCTCGTCCCTTATGGTAACGCCAGGGTTGGTCGCAACGATTCCATCACTTGTCAGGTATTTGGTTATGGTTTGTTCAGGGATGAGAAATTGGTAGTTGTTCGGAACCTTAGGTTTAAAATTGAATATGCAATTATGCGCGATTCTTCCGAATCTGATATGCTTTTGTTTATTCATGGCCCGAATGAATGCCTATTGAACACTGTGGAAGCCTGTGCCATTAACGCCTGGCCAGAGCTGGATGGTCATTTTCCTTTCATTTACTGCATCGAGTATCTGGTGTCCAAACGGAAGTACACCCAGTGGGAGTCATGTTTTGAGAAGTTGGGGTTGAATCCCAAGCCAATCAATGAATGCTACCATACTGAGCTTGGGAAAATGGACTATGAAAACTTCATAAACTACATCTGTGAGGCGTATAAAGGACCTGTTCTGCCAAGTGCCTGTCATGCTTCGTCCATTAGTGCCATTTGAAGATGAAAAGCCAAGTCCAGCCTCCCAAATAGTGCAAGAAGACAGAGATGATGATAACGTTGATATAATAAACAAGAATACAATCGAGGTGATAGTGTTATTTATTCTACTGCTTGAATGATGTCACATTGTATGTACCCCCACACTCTGAAATCGTTCGGTTTAATTTATGGATAATGCACTTTTAGTAGTGAGATATGAATCGTTATCTATTTGGTCCATGAAATTTCAATAGAGACACTTTAGCCTCTTGAGTTTGCGAAGTCATTTTAAATGGT

Coding sequence (CDS)

ATGGATTCTCCGCCTAAACTCTGTTCCCTCGCTTACATTTCTTATCTGCTGCTACTCTTGCTTTGCTCGTTCTTGTTTCCTGTTTCATCTACTTCATACTCCATAGCCACAACCTCCAATTATGGCACCGGAAAAGTTTCGCTCCAACTCTACTACGAGTCTCTCTGTCCTTACAGCGCCAATTTCATTGTGAACTATCTGCCAAAGCTTTTCGATGATGATCTCATCTCCATTGTTGATCTCAGGCTCGTCCCTTATGGTAACGCCAGGGTTGGTCGCAACGATTCCATCACTTGTCAGGTATTTGGTTATGGTTTGTTCAGGGATGAGAAATTGGTAGTTGTTCGGAACCTTAGGTTTAAAATTGAATATGCAATTATGCGCGATTCTTCCGAATCTGATATGCTTTTGTTTATTCATGGCCCGAATGAATGCCTATTGAACACTGTGGAAGCCTGTGCCATTAACGCCTGGCCAGAGCTGGATGGTCATTTTCCTTTCATTTACTGCATCGAGTATCTGGTGTCCAAACGGAAGTACACCCAGTGGGAGTCATGTTTTGAGAAGTTGGGGTTGAATCCCAAGCCAATCAATGAATGCTACCATACTGAGCTTGGGAAAATGGACTATGAAAACTTCATAAACTACATCTGTGAGGCGTATAAAGGACCTGTTCTGCCAAGTGCCTGTCATGCTTCGTCCATTAGTGCCATTTGA

Protein sequence

MDSPPKLCSLAYISYLLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDLISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPKPINECYHTELGKMDYENFINYICEAYKGPVLPSACHASSISAI

Homology

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BLAST of Cp4.1LG02g11950.1 vs. TrEMBL
Match: A0A0A0LXR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533560 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.8e-51
Identity = 128/269 (47.58%), Postives = 146/269 (54.28%), Query Frame = 1


Query: 1   MDSPPKLCSLAYISYLLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSA 60
           M+SPPKL     ISYL+L L   FL        S A+TS YGT KVSL+LYYE       
Sbjct: 1   MESPPKLGFFLCISYLILFLSSFFLL-------SSASTSTYGTHKVSLKLYYE------- 60

Query: 61  NFIVNYLPKLFDDDLISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRF 120
             +  Y      + LI + D  L+           SI           D +LV   N R 
Sbjct: 61  -SLCPYSANFIVNYLIKLFDDDLI-----------SIV----------DLRLVPYGNARV 120

Query: 121 KIEYAIMRDSSESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKY 180
                       +D +   HGP+ECLLNT+EACAINAWPELDGHFPFIYC+EYLV KRKY
Sbjct: 121 ----------GRNDSITCQHGPSECLLNTMEACAINAWPELDGHFPFIYCVEYLVYKRKY 180

Query: 181 TQWESCFEKLGLNPKPINECYHTELGKM-------------------------------D 239
           TQWESCFEKLGLNPKPI++CY TELGK                                D
Sbjct: 181 TQWESCFEKLGLNPKPISDCYSTELGKKLELEYAAETDNLQPPHKYVPWVVVDGQPLYED 223

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BLAST of Cp4.1LG02g11950.1 vs. TrEMBL
Match: A0A061GYN1_THECC (Thioredoxin superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_042205 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 18  LLLLCSF--LFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDL 77
           L LLCS   L P SS S   A T    + KVSL LYYESLCPYSANFIVNYL KLF+DDL
Sbjct: 10  LSLLCSLFLLCPFSSAS---AITLPSDSHKVSLTLYYESLCPYSANFIVNYLGKLFEDDL 69

Query: 78  ISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDM 137
           +SIVDL                             +LV   N + K           +D 
Sbjct: 70  LSIVDL-----------------------------RLVPWGNAKLK----------GNDT 129

Query: 138 LLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPK 197
               HGP ECLLNT+EACAI+AWP+L+ HFPFIYC+E LV + KY +WESC+ KLGL+ K
Sbjct: 130 FACQHGPGECLLNTIEACAIDAWPQLNDHFPFIYCVETLVYELKYLEWESCYGKLGLDSK 189

Query: 198 PINECYHTELGKM-------------------------------DYENFINYICEAYKGP 239
           PI++CY   LG                                 DYEN+I+Y+C+AYKG 
Sbjct: 190 PISDCYSNGLGLKLELQYAAETNALEPPHKYVPWVVVDGQPLYEDYENYISYVCKAYKGA 221

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BLAST of Cp4.1LG02g11950.1 vs. TrEMBL
Match: A0A061GXJ7_THECC (Thioredoxin superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_042205 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.2e-42
Identity = 111/265 (41.89%), Postives = 134/265 (50.57%), Query Frame = 1


Query: 18  LLLLCSF--LFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDL 77
           L LLCS   L P SS S   A T    + KVSL LYYESLCPYSANFIVNYL KLF+DDL
Sbjct: 10  LSLLCSLFLLCPFSSAS---AITLPSDSHKVSLTLYYESLCPYSANFIVNYLGKLFEDDL 69

Query: 78  ISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDM 137
           +SIVDL                             +LV   N + K           +D 
Sbjct: 70  LSIVDL-----------------------------RLVPWGNAKLK----------GNDT 129

Query: 138 LLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPK 197
               HGP ECLLNT+EACAI+AWP+L+ HFPFIYC+E LV + KY +WESC+ KLGL+ K
Sbjct: 130 FACQHGPGECLLNTIEACAIDAWPQLNDHFPFIYCVETLVYELKYLEWESCYGKLGLDSK 189

Query: 198 PINECYHTELGK------------------------------------------MDYENF 239
           PI++CY   LG                                            DYEN+
Sbjct: 190 PISDCYSNGLGLKLELQYAAETNALEPPHKYVPWVVVDGQPLYEVRSLNYQINGKDYENY 232

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BLAST of Cp4.1LG02g11950.1 vs. TrEMBL
Match: A0A067LLY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17387 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.3e-42
Identity = 113/276 (40.94%), Postives = 143/276 (51.81%), Query Frame = 1


Query: 1   MDSPPKLCSLAYISYLLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSA 60
           M SPPK+ +L+++ YL L   CSF            + ++  +GKVSL LYYESLCPYSA
Sbjct: 1   MASPPKI-TLSFLVYLCLF--CSF------------SRASSDSGKVSLGLYYESLCPYSA 60

Query: 61  NFIVNYLPKLFDDD-LISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLR 120
           NFI+N L +LF+DD L S+VDL L P+                              N R
Sbjct: 61  NFIINDLVELFEDDELFSVVDLHLSPW-----------------------------GNAR 120

Query: 121 FKIEYAIMRDSSESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRK 180
            K           +D  +  HGP+ECLLNTVEACAIN WP+L+ HFPFIYCIE LV +RK
Sbjct: 121 LK----------GNDSFVCQHGPSECLLNTVEACAINVWPQLEEHFPFIYCIESLVHERK 180

Query: 181 YTQWESCFEKLGLNPKPINECYHTELGK-------------------------------M 239
           + +WESCFE LGL+PKP+ +CY++  GK                                
Sbjct: 181 FPEWESCFETLGLDPKPVIDCYNSGYGKELELQYAAETNALQPPHQYVPWVVVDGQPLYE 222

[Close]

BLAST of Cp4.1LG02g11950.1 vs. TrEMBL
Match: A0A022PX44_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012187mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 99/250 (39.60%), Postives = 127/250 (50.80%), Query Frame = 1


Query: 16  LLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDL 75
           L LLL+ S    +S +S S A  +  G  KVS ++YYE+LCPY +N IVNYL KLFD DL
Sbjct: 4   LRLLLILSI---ISYSSASPAVAAADGGDKVSFEIYYETLCPYCSNLIVNYLGKLFDSDL 63

Query: 76  ISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDM 135
           +SI D                              KLV   N + K    I         
Sbjct: 64  LSITDF-----------------------------KLVPYGNAKIKPNGTITCQ------ 123

Query: 136 LLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPK 195
               HG  EC+LNTVEACAI+AWP+L+ +FPF+YC+E LV +  YT WE+CF+KLGL+P 
Sbjct: 124 ----HGEWECILNTVEACAIDAWPDLNTYFPFVYCVESLVYEHNYTYWETCFDKLGLDPS 183

Query: 196 PINECYHTELGKM-------------------------------DYENFINYICEAYKGP 235
           P+  CY++E GK                                DY NF++YIC+AYKG 
Sbjct: 184 PVAACYNSERGKELILGYAADTQALEPPHKYVPWVVVDGEPLYDDYRNFVSYICKAYKGT 211

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BLAST of Cp4.1LG02g11950.1 vs. TAIR10
Match: AT1G07080.1 (AT1G07080.1 Thioredoxin superfamily protein)

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-31
Identity = 91/251 (36.25%), Postives = 124/251 (49.40%), Query Frame = 1


Query: 14  SYLLLLLLCS-FLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFD 73
           S LL +L+C  FLFP +S+S     +    + KVS+ LYYESLCPY ++FIVN+L KLF+
Sbjct: 6   SKLLPVLVCYVFLFPFASSSDYSGVSLPSSSPKVSVGLYYESLCPYCSSFIVNHLAKLFE 65

Query: 74  DDLISIVDLRLVPYGNARVGRNDSIT--CQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDS 133
           DDLISIVDL L P+GN ++ R+D++T  CQ   +  F D       +   K+        
Sbjct: 66  DDLISIVDLHLSPWGNTKL-RSDNVTAVCQHGAFECFLDTVEACAIDAWPKV-------- 125

Query: 134 SESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKL 193
             SD   FI+                             C+E LV++ KY +WE+C+EKL
Sbjct: 126 --SDHFPFIY-----------------------------CVEKLVTEHKYDKWETCYEKL 185

Query: 194 GLNPKPINEC------------YHTELGKM-------------------DYENFINYICE 231
            LN KP+ +C            Y  E   +                   DYENFI+YIC+
Sbjct: 186 NLNSKPVADCLSSGHGNELALHYAAETNALQPPHKYVPWVVVDGQPLYEDYENFISYICK 216

[Close]

BLAST of Cp4.1LG02g11950.1 vs. TAIR10
Match: AT5G01580.1 (AT5G01580.1 gamma interferon responsive lysosomal thiol (GILT) reductase family protein)

HSP 1 Score: 111.7 bits (278), Expect = 6.3e-25
Identity = 72/234 (30.77%), Postives = 102/234 (43.59%), Query Frame = 1


Query: 28  VSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDLISIVDLRLVPYG 87
           ++S +      S   + KV+L LYYE+LCP+ A FIVN LPK+F+  LIS +DL      
Sbjct: 9   ITSCTIFFCLLSLSSSQKVTLSLYYEALCPFCAEFIVNRLPKIFETGLISSIDL------ 68

Query: 88  NARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDMLLFIHGPNECLL 147
                       Q+  +G                   AI  D +    +L  HG  EC L
Sbjct: 69  ------------QLVPWG-----------------NAAIRPDGT----ILCQHGEAECAL 128

Query: 148 NTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPKPINECYHTELGK 207
           N + ACAINA+P++  HF +IYC E LV + K  +W  C E +GL+   + +CY    G 
Sbjct: 129 NAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEKWADCLEMVGLSRAAV-DCYINGYGN 188

Query: 208 M-------------------------------DYENFINYICEAYKGPVLPSAC 231
                                           +Y+NF+ Y+C AY    +P AC
Sbjct: 189 QLEQRYAEETSELYPAHRFVPWVVVNNLPLQENYQNFVMYVCNAYGSNQVPEAC 202

[Close]

BLAST of Cp4.1LG02g11950.1 vs. TAIR10
Match: AT4G12890.1 (AT4G12890.1 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.9e-23
Identity = 76/232 (32.76%), Postives = 108/232 (46.55%), Query Frame = 1


Query: 18  LLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDLIS 77
           L L C F+F  S+ +  +A  SN    KV + LYYESLCPY  NFIV+ L K+FD DL+ 
Sbjct: 16  LFLACLFVFTYSN-NLVVAENSN----KVKINLYYESLCPYCQNFIVDDLGKIFDSDLLK 75

Query: 78  IVDLRLVPYGNARVGRNDSITCQ------------VFGYGLFRDEKLVVVRNLRFKIEYA 137
           I DL+LVP+GNA +  N +ITCQ              G     D K      L++K    
Sbjct: 76  ITDLKLVPFGNAHISNNLTITCQHGEEECKLNALEACGIRTLPDPK------LQYKFIRC 135

Query: 138 IMRDSSESDMLLFIHGP----NECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYT 197
           + +D++E +  +   G     N+C    +    I  + +L            L  K +Y 
Sbjct: 136 VEKDTNEWESCVKKSGREKAINDCYNGDLSQKLILGYAKLTSS---------LKPKHEYV 195

Query: 198 QWESCFEKLGLNPKPINECYHTELGKMDYENFINYICEAYKGPVLPSACHAS 234
            W      + LN KP+ + YH         N +  +C+AYKG  LP  C +S
Sbjct: 196 PW------VTLNGKPLYDNYH---------NLVAQVCKAYKGKDLPKLCSSS 212

[Close]

BLAST of Cp4.1LG02g11950.1 vs. TAIR10
Match: AT4G12900.1 (AT4G12900.1 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-14
Identity = 45/129 (34.88%), Postives = 60/129 (46.51%), Query Frame = 1


Query: 140 HGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPKPINE 199
           HG  EC LN +EACAI  WP    H+ FI C+E          WESC +K G   K IN+
Sbjct: 92  HGEEECKLNALEACAIRTWPNQRLHYKFIRCVE-----TNTNAWESCVKKYG-GEKAIND 151

Query: 200 CYHTEL----------------------------GKMDYEN---FINYICEAYKG-PVLP 237
           CY+ +L                            G+  YEN   F++ +C+AYKG   LP
Sbjct: 152 CYNGDLSKELILGYANQTLSLKPEHKYVPWMTLNGEPLYENIGDFVDLVCKAYKGKAALP 211

[Close]

BLAST of Cp4.1LG02g11950.1 vs. TAIR10
Match: AT4G12870.1 (AT4G12870.1 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 72/253 (28.46%), Postives = 103/253 (40.71%), Query Frame = 1


Query: 17  LLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDLI 76
           L+   C  LF   + S+ + T  +    KV L LYYESLCP   +FIV        D+L+
Sbjct: 10  LVFFACFVLF---TFSHKLVTGES---DKVELNLYYESLCPGCQSFIV--------DELV 69

Query: 77  SIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDML 136
            + D  L           D+IT          D KLV          YA +   S +  +
Sbjct: 70  KVFDSDL-----------DTIT----------DVKLV-------PFGYAKV---SNNLTV 129

Query: 137 LFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWE-SCFEKLGLNPK 196
           +  HG  EC LN +EAC IN  P     + FI C+E          WE SC +  G N K
Sbjct: 130 ICQHGEEECKLNALEACVINTLPNPKSQYKFIRCVE-----NNTDNWESSCLKGYG-NEK 189

Query: 197 PINECYHTELGK-------------------------------MDYENFINYICEAYKGP 237
            IN+CY+++L K                                  ++ +  +C+AYKG 
Sbjct: 190 AINDCYNSDLSKKLILGYAKQTSSLKPKHEFVPWVTINSKPLYTKLDDLVGQVCKAYKGK 211

[Close]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr
Match: gi|449454993|ref|XP_004145238.1| (PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 128/269 (47.58%), Postives = 146/269 (54.28%), Query Frame = 1


Query: 1   MDSPPKLCSLAYISYLLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSA 60
           M+SPPKL     ISYL+L L   FL        S A+TS YGT KVSL+LYYE       
Sbjct: 1   MESPPKLGFFLCISYLILFLSSFFLL-------SSASTSTYGTHKVSLKLYYE------- 60

Query: 61  NFIVNYLPKLFDDDLISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRF 120
             +  Y      + LI + D  L+           SI           D +LV   N R 
Sbjct: 61  -SLCPYSANFIVNYLIKLFDDDLI-----------SIV----------DLRLVPYGNARV 120

Query: 121 KIEYAIMRDSSESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKY 180
                       +D +   HGP+ECLLNT+EACAINAWPELDGHFPFIYC+EYLV KRKY
Sbjct: 121 ----------GRNDSITCQHGPSECLLNTMEACAINAWPELDGHFPFIYCVEYLVYKRKY 180

Query: 181 TQWESCFEKLGLNPKPINECYHTELGKM-------------------------------D 239
           TQWESCFEKLGLNPKPI++CY TELGK                                D
Sbjct: 181 TQWESCFEKLGLNPKPISDCYSTELGKKLELEYAAETDNLQPPHKYVPWVVVDGQPLYED 223

[Close]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr
Match: gi|659115442|ref|XP_008457559.1| (PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like, partial [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 2.6e-49
Identity = 121/243 (49.79%), Postives = 133/243 (54.73%), Query Frame = 1


Query: 27  PVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDLISIVDLRLVPY 86
           P S    S A+TSNYGT KVSL+LYYESL          Y      + L+ + D  L+  
Sbjct: 24  PPSFLLLSSASTSNYGTHKVSLKLYYESL--------CPYSANFIVNYLVKLFDDDLI-- 83

Query: 87  GNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDMLLFIHGPNECL 146
                    SI           D  LV   N R             +D +   HGPNECL
Sbjct: 84  ---------SIV----------DLSLVPYGNARV----------GRNDSITCQHGPNECL 143

Query: 147 LNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPKPINECYHTELG 206
           LNTVEACAINAWPELDGHFPFIYC+EYLV KRKYTQWESCFEKLGLNPKPI++CY TELG
Sbjct: 144 LNTVEACAINAWPELDGHFPFIYCVEYLVYKRKYTQWESCFEKLGLNPKPISDCYKTELG 203

Query: 207 KM-------------------------------DYENFINYICEAYKGPVLPSACHASSI 239
           K                                DYENFINYICEAYKGPV P+AC ASSI
Sbjct: 204 KKLELEYAAETDNLQPPHKYVPWVVVDGQPLYEDYENFINYICEAYKGPVEPTACKASSI 227

[Close]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr
Match: gi|590591261|ref|XP_007016964.1| (Thioredoxin superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 111/254 (43.70%), Postives = 134/254 (52.76%), Query Frame = 1


Query: 18  LLLLCSF--LFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDL 77
           L LLCS   L P SS S   A T    + KVSL LYYESLCPYSANFIVNYL KLF+DDL
Sbjct: 10  LSLLCSLFLLCPFSSAS---AITLPSDSHKVSLTLYYESLCPYSANFIVNYLGKLFEDDL 69

Query: 78  ISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDM 137
           +SIVDL                             +LV   N + K           +D 
Sbjct: 70  LSIVDL-----------------------------RLVPWGNAKLK----------GNDT 129

Query: 138 LLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPK 197
               HGP ECLLNT+EACAI+AWP+L+ HFPFIYC+E LV + KY +WESC+ KLGL+ K
Sbjct: 130 FACQHGPGECLLNTIEACAIDAWPQLNDHFPFIYCVETLVYELKYLEWESCYGKLGLDSK 189

Query: 198 PINECYHTELGKM-------------------------------DYENFINYICEAYKGP 239
           PI++CY   LG                                 DYEN+I+Y+C+AYKG 
Sbjct: 190 PISDCYSNGLGLKLELQYAAETNALEPPHKYVPWVVVDGQPLYEDYENYISYVCKAYKGA 221

[Close]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr
Match: gi|1009116164|ref|XP_015874626.1| (PREDICTED: gamma-interferon-inducible lysosomal thiol reductase [Ziziphus jujuba])

HSP 1 Score: 182.6 bits (462), Expect = 8.2e-43
Identity = 112/259 (43.24%), Postives = 135/259 (52.12%), Query Frame = 1


Query: 11  AYISYLLLLLLCSFLFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKL 70
           A +SYLL+L+  +F  P SS+S S A      + KVSL LYYESLCPYSANFIVNYL  +
Sbjct: 7   ALLSYLLILI--AFFSPTSSSS-SRAEIQPSDSEKVSLGLYYESLCPYSANFIVNYLVDI 66

Query: 71  FDDDLISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDS 130
           F +DLISIVDL                              LV   N R +         
Sbjct: 67  FQNDLISIVDL-----------------------------SLVPWGNARIR--------- 126

Query: 131 SESDMLLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKL 190
             ++     HGP ECLLNTVEACAI+ WPEL+ HFPFIYCIE  V + K+T+WE CFEKL
Sbjct: 127 -PNNTFTCQHGPYECLLNTVEACAIDEWPELNVHFPFIYCIESFVHEHKHTEWEKCFEKL 186

Query: 191 GLNPKPINECYHTELGKM-------------------------------DYENFINYICE 239
            L+PK I  CY  E GK                                DYENF++YIC+
Sbjct: 187 DLDPKSITNCYTGESGKKLELQYAAETEALQPPHQYVPWVVVDGQPLYEDYENFLSYICK 223

[Close]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr
Match: gi|590591269|ref|XP_007016966.1| (Thioredoxin superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 111/265 (41.89%), Postives = 134/265 (50.57%), Query Frame = 1


Query: 18  LLLLCSF--LFPVSSTSYSIATTSNYGTGKVSLQLYYESLCPYSANFIVNYLPKLFDDDL 77
           L LLCS   L P SS S   A T    + KVSL LYYESLCPYSANFIVNYL KLF+DDL
Sbjct: 10  LSLLCSLFLLCPFSSAS---AITLPSDSHKVSLTLYYESLCPYSANFIVNYLGKLFEDDL 69

Query: 78  ISIVDLRLVPYGNARVGRNDSITCQVFGYGLFRDEKLVVVRNLRFKIEYAIMRDSSESDM 137
           +SIVDL                             +LV   N + K           +D 
Sbjct: 70  LSIVDL-----------------------------RLVPWGNAKLK----------GNDT 129

Query: 138 LLFIHGPNECLLNTVEACAINAWPELDGHFPFIYCIEYLVSKRKYTQWESCFEKLGLNPK 197
               HGP ECLLNT+EACAI+AWP+L+ HFPFIYC+E LV + KY +WESC+ KLGL+ K
Sbjct: 130 FACQHGPGECLLNTIEACAIDAWPQLNDHFPFIYCVETLVYELKYLEWESCYGKLGLDSK 189

Query: 198 PINECYHTELGK------------------------------------------MDYENF 239
           PI++CY   LG                                            DYEN+
Sbjct: 190 PISDCYSNGLGLKLELQYAAETNALEPPHKYVPWVVVDGQPLYEVRSLNYQINGKDYENY 232

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g11950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR3_CUCSA	9.8e-51	47.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533560 PE=4 SV=1	[more]
A0A061GYN1_THECC	1.2e-43	43.70	Thioredoxin superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_042205 PE=4 ...	[more]
A0A061GXJ7_THECC	2.2e-42	41.89	Thioredoxin superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_042205 PE=4 ...	[more]
A0A067LLY1_JATCU	6.3e-42	40.94	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17387 PE=4 SV=1	[more]
A0A022PX44_ERYGU	1.1e-38	39.60	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012187mg PE=4 SV=1	[more]

BLAST of Cp4.1LG02g11950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07080.1	5.9e-31	36.25	Thioredoxin superfamily protein	[more]
AT5G01580.1	6.3e-25	30.77	gamma interferon responsive lysosomal thiol (GILT) reductase family ...	[more]
AT4G12890.1	5.9e-23	32.76	Gamma interferon responsive lysosomal thiol (GILT) reductase family ...	[more]
AT4G12900.1	2.2e-14	34.88	Gamma interferon responsive lysosomal thiol (GILT) reductase family ...	[more]
AT4G12870.1	2.5e-13	28.46	Gamma interferon responsive lysosomal thiol (GILT) reductase family ...	[more]

BLAST of Cp4.1LG02g11950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454993\|ref\|XP_004145238.1\|	1.4e-50	47.58	PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sa...	[more]
gi\|659115442\|ref\|XP_008457559.1\|	2.6e-49	49.79	PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like, partial [C...	[more]
gi\|590591261\|ref\|XP_007016964.1\|	1.7e-43	43.70	Thioredoxin superfamily protein isoform 1 [Theobroma cacao]	[more]
gi\|1009116164\|ref\|XP_015874626.1\|	8.2e-43	43.24	PREDICTED: gamma-interferon-inducible lysosomal thiol reductase [Ziziphus jujuba...	[more]
gi\|590591269\|ref\|XP_007016966.1\|	3.1e-42	41.89	Thioredoxin superfamily protein isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004911	Interferon-induced_GILT

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g11950	Cp4.1LG02g11950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g11950.1	Cp4.1LG02g11950.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g11950.1:five_prime_utr:001	Cp4.1LG02g11950.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g11950.1:cds:001	Cp4.1LG02g11950.1:cds:001	CDS
Cp4.1LG02g11950.1:cds:002	Cp4.1LG02g11950.1:cds:002	CDS
Cp4.1LG02g11950.1:cds:003	Cp4.1LG02g11950.1:cds:003	CDS
Cp4.1LG02g11950.1:cds:004	Cp4.1LG02g11950.1:cds:004	CDS
Cp4.1LG02g11950.1:cds:005	Cp4.1LG02g11950.1:cds:005	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g11950.1:three_prime_utr:001	Cp4.1LG02g11950.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004911	Gamma interferon inducible lysosomal thiol reductase GILT	PANTHER	PTHR13234	GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT	coord: 45..100 score: 7.3E-44coord: 140..207 score: 7.3
IPR004911	Gamma interferon inducible lysosomal thiol reductase GILT	PFAM	PF03227	GILT	coord: 48..100 score: 1.3E-11coord: 139..189 score: 7.3
None	No IPR available	PANTHER	PTHR13234:SF8	GAMMA-INTERFERON-INDUCIBLE LYSOSOMAL THIOL REDUCTASE	coord: 140..207 score: 7.3E-44coord: 45..100 score: 7.3