Cp4.1LG02g09900.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g09900.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG02 : 9973282 .. 9973819 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACAAGCACCATCAGATTTGCCCTACGAAGAATTCGAACCTTTCTGCGAATGGAAAAGGCTCGAAGACTCCGATGTTCTTCAGGTTCATCTCGCAGGTACATTATCAACTCACGCTTTCCTCCGCTTTCTCATAAACATTCATAGCGATTCGAATTTCCTAAACAGAATTCAAGAAGGAAGAATTGAGGGTTCGGATCAAGAACAACTCCGTCCTTACACTTTCCGGCGAGCGCCTAGCAGCCGAAGACTGGAAGAAGATCCGTTTCAACAGTGAAATCAAACTCCCAAAGGATACACTTCCAGATCAAATCCGTGCCAAATTCGGCGACTCTGTTCTTTCGATTACGATGCCGAAGAAGAAAGCCTCACCAGCCTCCATTGATAATGCTTGCCCTAGAAACTTCATATCCGGAGTAAAATCTTCATTAGCAAGGTTGAAATTTAGCAAGGAATCGGCTGTGGCTATGGCGGTTGCGGGACTCATTCTGGCCTCGGGAGCTTACTACTTGATAGAAAACGCTGCGGATTGA

mRNA sequence

ATGGCGGAACAAGCACCATCAGATTTGCCCTACGAAGAATTCGAACCTTTCTGCGAATGGAAAAGGCTCGAAGACTCCGATGTTCTTCAGGTTCATCTCGCAGAATTCAAGAAGGAAGAATTGAGGGTTCGGATCAAGAACAACTCCGTCCTTACACTTTCCGGCGAGCGCCTAGCAGCCGAAGACTGGAAGAAGATCCGTTTCAACAGTGAAATCAAACTCCCAAAGGATACACTTCCAGATCAAATCCGTGCCAAATTCGGCGACTCTGTTCTTTCGATTACGATGCCGAAGAAGAAAGCCTCACCAGCCTCCATTGATAATGCTTGCCCTAGAAACTTCATATCCGGAGTAAAATCTTCATTAGCAAGGTTGAAATTTAGCAAGGAATCGGCTGTGGCTATGGCGGTTGCGGGACTCATTCTGGCCTCGGGAGCTTACTACTTGATAGAAAACGCTGCGGATTGA

Coding sequence (CDS)

ATGGCGGAACAAGCACCATCAGATTTGCCCTACGAAGAATTCGAACCTTTCTGCGAATGGAAAAGGCTCGAAGACTCCGATGTTCTTCAGGTTCATCTCGCAGAATTCAAGAAGGAAGAATTGAGGGTTCGGATCAAGAACAACTCCGTCCTTACACTTTCCGGCGAGCGCCTAGCAGCCGAAGACTGGAAGAAGATCCGTTTCAACAGTGAAATCAAACTCCCAAAGGATACACTTCCAGATCAAATCCGTGCCAAATTCGGCGACTCTGTTCTTTCGATTACGATGCCGAAGAAGAAAGCCTCACCAGCCTCCATTGATAATGCTTGCCCTAGAAACTTCATATCCGGAGTAAAATCTTCATTAGCAAGGTTGAAATTTAGCAAGGAATCGGCTGTGGCTATGGCGGTTGCGGGACTCATTCTGGCCTCGGGAGCTTACTACTTGATAGAAAACGCTGCGGATTGA

Protein sequence

MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKASPASIDNACPRNFISGVKSSLARLKFSKESAVAMAVAGLILASGAYYLIENAAD

Homology

[Close]

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot
Match: RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWS--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F ++VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot
Match: RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWS--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F ++VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot
Match: RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWS--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F ++VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot
Match: RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWN--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F ++VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot
Match: RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWN--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F  +VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKKNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL
Match: A0A0A0LT66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031780 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-45
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 1


Query: 1   MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAA 60
           M +  PSD+ Y +FEP+C+WK++EDSDVL+V L EFKKEELRVRIKNNS+LT+SGE+LAA
Sbjct: 1   MEKGEPSDVLYVKFEPYCQWKKIEDSDVLEVQLPEFKKEELRVRIKNNSILTISGEQLAA 60

Query: 61  EDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKASP---------ASID---- 120
           +D KK+ FN +IKLPKD  PD+IRAKFG ++LSITMPKK + P         AS D    
Sbjct: 61  KDGKKMHFNRDIKLPKDVFPDEIRAKFGGNILSITMPKKASPPEISKPNPDNASEDKLTQ 120

Query: 121 ---NACPRNFISGVKSSLARLKFSKESAVAMAVAGLILASGAYYLIEN 153
              N  P+NFIS +KS L+RLKFSK +A AMA A +ILA G YYLI+N
Sbjct: 121 SNGNGKPKNFISKLKSPLSRLKFSKATATAMATAVVILAVGVYYLIKN 168

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL
Match: W9QEJ7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014720 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.9e-20
Identity = 55/138 (39.86%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 12  EEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWKKIRFNSE 71
           EEFEPFC+W+R ++ D+L+VHL  FK+E LRV++ N  +LT+SGE+ + ED+K  RF  E
Sbjct: 3   EEFEPFCQWRRGQERDILEVHLKGFKREHLRVQMNNGHILTISGEQ-SVEDYKIRRFRKE 62

Query: 72  IKLPKDTLPDQIRAKFGDSVLSITMPKKKASPASIDNACPRNFISGVKSSLARLKFSKES 131
           IK+ KD  PDQIRAKF   +L IT+P +K +               ++  + R++ +++ 
Sbjct: 63  IKVSKDCTPDQIRAKFASGILYITLPMRKTA-------------FRLRDGMLRMEMTRKM 122

Query: 132 AVAMAVAGLILASGAYYL 150
           A+++A   L++A G + +
Sbjct: 123 ALSVA---LVVAVGGFLI 123

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL
Match: A0A067KU60_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02697 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.7e-16
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWKKIRFNS 70
           YE+FEP+C+W+R  + D L+VHL  FKK +L++ + N  V+T++GERL  +D K+ RF  
Sbjct: 9   YEDFEPYCKWQRAPECDTLEVHLHGFKKNQLKINVSNLGVMTVTGERL-LDDSKRSRFCR 68

Query: 71  EIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           EIKL KD   ++IRAK    +L I MPKK
Sbjct: 69  EIKLSKDHKTNEIRAKLTGGILYIVMPKK 96

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL
Match: A0A0D2VHN1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G194400 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 8   DLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWKK-I 67
           ++ YEEFEPFC+WKR  +SD L++HL EFK+++LRV++ ++  L +SGER +  D KK  
Sbjct: 2   EITYEEFEPFCKWKREPNSDTLEIHLPEFKRQQLRVQLSSSGNLVISGERESDSDGKKGN 61

Query: 68  RFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKASPASIDNACPRNFISGVKSSLARLK 127
           RF  E K+  +   +QIRA+F   +L + MPK+  + A           +GV    + + 
Sbjct: 62  RFRREFKVSNEIEANQIRAQFCSGILYVIMPKRSTAAA-----------AGVDVKASTMN 121

Query: 128 FSKESAVAMAVA-GLILASGAY 148
           ++K  A+ + VA    +A G Y
Sbjct: 122 WNKRLAMEIIVAVSSAVAVGVY 132

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL
Match: W9RK90_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003543 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-15
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 5   APSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWK 64
           +P    Y +FEP+C W R E  D+L VHL  FK+E++RV++ +  +LT+ G+R   ++ K
Sbjct: 9   SPPSYSYMDFEPYCAWHREEGVDILAVHLHGFKREQMRVQVNSQRILTIHGQR-PLDETK 68

Query: 65  KIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKAS 103
             RF+ + KLP + + D IRAKF   +L+ITMPK+ +S
Sbjct: 69  WSRFSKQNKLPNECMEDGIRAKFAAGILTITMPKRCSS 105

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10
Match: AT1G54400.1 (AT1G54400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-17
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHL-AEFKKEELRVRIKNNSVLTLSGERLAAEDWKKIRFN 70
           Y+E EPFC W+R ED D+L++HL +  KKE L+++I N+ VLT++G     +  K IRF 
Sbjct: 13  YDEIEPFCRWRRTEDIDILELHLPSGLKKEHLKIQINNSGVLTITG-GCPVDQTKTIRFM 72

Query: 71  SEIKLPKDTLPDQIRAKFGDSVLSITMPK 99
            E K+ KD   ++IRAKF   VL +TMPK
Sbjct: 73  KETKVAKDCKRNEIRAKFSKGVLYVTMPK 100

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10
Match: AT5G04890.1 (AT5G04890.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 9.8e-11
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 11  YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVR-IKNNSVLTLSGER-LAAEDWKKIRF 70
           YE+F P  EWK   ++ +L + L  F KE+++V  + ++ ++ ++GER LA   W   RF
Sbjct: 16  YEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWS--RF 75

Query: 71  NSEIKLPKDTLPDQIRAKFGDSVLSITMPKK 100
           N    +P++ L D+I   F ++VL+ITMPK+
Sbjct: 76  NEVFTVPQNCLVDKIHGSFKNNVLTITMPKE 104

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10
Match: AT1G07400.1 (AT1G07400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-10
Identity = 36/104 (34.62%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 19  EWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAED-----WKKI-----RF 78
           +WK   ++ V +  L   KKEE++V I+++SVL +SGER   ++     W ++     +F
Sbjct: 51  DWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQF 110

Query: 79  NSEIKLPKDTLPDQIRAKFGDSVLSITMP-----KKKASPASID 108
           + + KLP++   DQ++A   + VL++T+P     KKKA   SID
Sbjct: 111 SRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSID 154

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10
Match: AT1G59860.1 (AT1G59860.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 19  EWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAED-----WKKIR-----F 78
           +WK   ++ V +  L   KKEE++V I+++SVL +SGER   ++     W ++      F
Sbjct: 49  DWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGF 108

Query: 79  NSEIKLPKDTLPDQIRAKFGDSVLSITMP-----KKKASPASID 108
           + + +LP++   DQ++A   + VL++T+P     KKKA   SID
Sbjct: 109 SRKFRLPENVKMDQVKASMENGVLTVTVPKVETNKKKAQVKSID 152

[Close]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10
Match: AT2G27140.1 (AT2G27140.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 8.3e-10
Identity = 31/98 (31.63%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 1   MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAA 60
           +++ A ++  Y+EFEP   WK  +  + L ++L  F+KE+L+V++     L + G+R A 
Sbjct: 4   ISDHANANRIYDEFEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTTTRKLRVMGDRPAG 63

Query: 61  EDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPK 99
            + K IRF  E  +P +   D + AKF  + L + +P+
Sbjct: 64  AN-KWIRFRKEFPIPPNIDVDSVSAKFEGANLVVRLPR 100

[Close]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr
Match: gi|659066279|ref|XP_008465577.1| (PREDICTED: 16.9 kDa class I heat shock protein 1 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 2.5e-48
Identity = 110/168 (65.48%), Postives = 127/168 (75.60%), Query Frame = 1


Query: 1   MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAA 60
           M +  PS + YEEFEPFC+WK+LEDSDVL+VHL EFKKEELRVRIKNNS+LTLSGE L A
Sbjct: 1   MEKGEPSGVLYEEFEPFCKWKKLEDSDVLEVHLPEFKKEELRVRIKNNSILTLSGEHLTA 60

Query: 61  EDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKASP---------ASID---- 120
           +D KK+ FN EIKLPKD  PD+IRAKFG +VLSITMPKK + P         AS D    
Sbjct: 61  KDGKKMHFNREIKLPKDIYPDEIRAKFGGNVLSITMPKKASPPEISKPNPDNASEDKLTQ 120

Query: 121 ---NACPRNFISGVKSSLARLKFSKESAVAMAVAGLILASGAYYLIEN 153
              N  P+NFIS +KS L+RLKFSKE+A AMAVA +ILA G YYLI+N
Sbjct: 121 SNGNGKPKNFISRLKSPLSRLKFSKETATAMAVAVVILAVGVYYLIKN 168

[Close]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr
Match: gi|449439223|ref|XP_004137386.1| (PREDICTED: 18.1 kDa class I heat shock protein [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-45
Identity = 102/168 (60.71%), Postives = 126/168 (75.00%), Query Frame = 1


Query: 1   MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAA 60
           M +  PSD+ Y +FEP+C+WK++EDSDVL+V L EFKKEELRVRIKNNS+LT+SGE+LAA
Sbjct: 1   MEKGEPSDVLYVKFEPYCQWKKIEDSDVLEVQLPEFKKEELRVRIKNNSILTISGEQLAA 60

Query: 61  EDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKKASP---------ASID---- 120
           +D KK+ FN +IKLPKD  PD+IRAKFG ++LSITMPKK + P         AS D    
Sbjct: 61  KDGKKMHFNRDIKLPKDVFPDEIRAKFGGNILSITMPKKASPPEISKPNPDNASEDKLTQ 120

Query: 121 ---NACPRNFISGVKSSLARLKFSKESAVAMAVAGLILASGAYYLIEN 153
              N  P+NFIS +KS L+RLKFSK +A AMA A +ILA G YYLI+N
Sbjct: 121 SNGNGKPKNFISKLKSPLSRLKFSKATATAMATAVVILAVGVYYLIKN 168

[Close]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr
Match: gi|703067633|ref|XP_010088020.1| (hypothetical protein L484_014720 [Morus notabilis])

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 55/138 (39.86%), Postives = 89/138 (64.49%), Query Frame = 1


Query: 12  EEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAAEDWKKIRFNSE 71
           EEFEPFC+W+R ++ D+L+VHL  FK+E LRV++ N  +LT+SGE+ + ED+K  RF  E
Sbjct: 3   EEFEPFCQWRRGQERDILEVHLKGFKREHLRVQMNNGHILTISGEQ-SVEDYKIRRFRKE 62

Query: 72  IKLPKDTLPDQIRAKFGDSVLSITMPKKKASPASIDNACPRNFISGVKSSLARLKFSKES 131
           IK+ KD  PDQIRAKF   +L IT+P +K +               ++  + R++ +++ 
Sbjct: 63  IKVSKDCTPDQIRAKFASGILYITLPMRKTA-------------FRLRDGMLRMEMTRKM 122

Query: 132 AVAMAVAGLILASGAYYL 150
           A+++A   L++A G + +
Sbjct: 123 ALSVA---LVVAVGGFLI 123

[Close]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr
Match: gi|1009164063|ref|XP_015900296.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Ziziphus jujuba])

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-17
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 1


Query: 1   MAEQAPSDLP--YEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERL 60
           MA +   DL   YE+FEPFC+WKR  + D+L+VHL  FKKE+LRV+  N+ +LT++GE+ 
Sbjct: 1   MANKIQPDLKRSYEDFEPFCQWKRDNERDILEVHLEGFKKEQLRVQFNNSGILTITGEK- 60

Query: 61  AAEDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPK-----------KKASPASID 120
             ++ K  RF  EI + KD+  ++IRAK    VL IT+PK             AS A+ +
Sbjct: 61  PIDETKCSRFKKEINIAKDSDSNKIRAKLSRGVLLITIPKITSMSSKQAAVDPASAATEE 120

Query: 121 N--ACPRNFISGVKSSLARLKFSKESA---VAMAVAGLILASGAY 148
           N  A      SG++++++ LK S++ A   + +A    I+  G+Y
Sbjct: 121 NIQAKENALSSGLRNAISSLKLSRKMALNVLVVAATFAIIGVGSY 164

[Close]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr
Match: gi|747093443|ref|XP_011094526.1| (PREDICTED: uncharacterized protein LOC105174197 [Sesamum indicum])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 1


Query: 1   MAEQAPSDLPYEEFEPFCEWKRLEDSDVLQVHLAEFKKEELRVRIKNNSVLTLSGERLAA 60
           MA +    L +EEFEP C+W+R ED DVL++HL EF KE+L+V+I N+ VL +SGER   
Sbjct: 1   MAGKGDHALAHEEFEPLCKWQRSEDLDVLEIHLQEFNKEQLKVQISNHGVLKISGER-PL 60

Query: 61  EDWKKIRFNSEIKLPKDTLPDQIRAKFGDSVLSITMPKKK-ASPASIDNACP 112
           +  +K +F  EI++  +     IRAKF +  L ITMPK+K A P    N  P
Sbjct: 61  DASRKSKFYKEIQISSNCDTSAIRAKFVNGFLYITMPKRKPAVPPKTGNGSP 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RTM2_ARATH	1.7e-09	37.36	Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=2 SV=1	[more]
RTM2C_ARATH	1.7e-09	37.36	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 ...	[more]
RTM2B_ARATH	1.7e-09	37.36	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 ...	[more]
RTM2A_ARATH	1.7e-09	37.36	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 ...	[more]
RTM2D_ARATH	3.0e-09	37.36	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana GN=RTM2 PE=3 ...	[more]

BLAST of Cp4.1LG02g09900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT66_CUCSA	1.4e-45	60.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G031780 PE=3 SV=1	[more]
W9QEJ7_9ROSA	9.9e-20	39.86	Uncharacterized protein OS=Morus notabilis GN=L484_014720 PE=3 SV=1	[more]
A0A067KU60_JATCU	8.7e-16	49.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02697 PE=3 SV=1	[more]
A0A0D2VHN1_GOSRA	1.1e-15	37.32	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G194400 PE=3 SV=1	[more]
W9RK90_9ROSA	5.6e-15	42.86	Uncharacterized protein OS=Morus notabilis GN=L484_003543 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g09900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54400.1	1.8e-17	48.31	HSP20-like chaperones superfamily protein	[more]
AT5G04890.1	9.8e-11	37.36	HSP20-like chaperones superfamily protein	[more]
AT1G07400.1	2.2e-10	34.62	HSP20-like chaperones superfamily protein	[more]
AT1G59860.1	6.4e-10	33.65	HSP20-like chaperones superfamily protein	[more]
AT2G27140.1	8.3e-10	31.63	HSP20-like chaperones superfamily protein	[more]

BLAST of Cp4.1LG02g09900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066279\|ref\|XP_008465577.1\|	2.5e-48	65.48	PREDICTED: 16.9 kDa class I heat shock protein 1 [Cucumis melo]	[more]
gi\|449439223\|ref\|XP_004137386.1\|	2.0e-45	60.71	PREDICTED: 18.1 kDa class I heat shock protein [Cucumis sativus]	[more]
gi\|703067633\|ref\|XP_010088020.1\|	1.4e-19	39.86	hypothetical protein L484_014720 [Morus notabilis]	[more]
gi\|1009164063\|ref\|XP_015900296.1\|	3.0e-17	38.18	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Ziziphus jujuba]	[more]
gi\|747093443\|ref\|XP_011094526.1\|	1.5e-16	46.43	PREDICTED: uncharacterized protein LOC105174197 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g09900	Cp4.1LG02g09900	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g09900.1:cds:001	Cp4.1LG02g09900.1:cds:001	CDS
Cp4.1LG02g09900.1:cds:002	Cp4.1LG02g09900.1:cds:002	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g09900.1	Cp4.1LG02g09900.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 20..102 score: 1.4
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 19..98 score: 11
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 11..103 score: 6.8
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 9..102 score: 6.28
None	No IPR available	PANTHER	PTHR11527:SF171	ALPHA-CRYSTALLIN DOMAIN OF HEAT SHOCK PROTEIN-CONTAINING PROTEIN	coord: 11..119 score: 8.1