Cp4.1LG02g06170.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG02g06170.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BRISC and BRCA1-A complex member 1
Location	Cp4.1LG02 : 1303229 .. 1305919 (-)
Sequence length	1118

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGATTATTTTAATTAATTGTCTGAATTAATTAATCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGGTAATGCCCTATCCATCGCCTATTTCTTGTTGATCTTGCTTTCGTCCTTCTGTTCTTTCTATTTTCCAGAAATTTAGAATTGGGATGATGAAGTTTCTAGGGTTTGTGTCTGTTTTAGGTTAAAGGTAATTTTAATTTTAGGGGAGTTATATATTTCTTCGTATTCTTCCAGTCTTTTTAACTCCACGGACAGCCTTTCTGTTCTTAGCATTTTGCGCATCGTTATGCTTATTGACCTAAACTGGTGAACTGAAATTGTAACTAGTGATCAAGGATTTAATGTGGTTCTGGAGAAATTATGGATTGTTCTTTGGTTGGAAACTCGCAGTTTAAATTCTTATGCAATTTGAGTTGTACTTGGCATTCTGTTTGGAGACTATATCTGAGTTTTGCCTCTGATCCAACTCATAGAACTTTAAGATTTTGCATAGTGTGAATGTGATTATCCTCTTAGGTCCTTATTTATTGTTCAATCGGTATCTGATTTGCTACTTATAGTTGAAGTACATAGCATAAACTTGCTGATCAAACTAGTAATCAATTTGCAACTTTGAATTGAAGAATATAACTCAACCATGCTGATCCAACGCATTTTCCTTTCCACTTTGTTTACTCTTTCTAAGAGGTGTTGGTTTGATATTGTATTTAAAGGGGGAAAGGGAGAAGATGATATCTCCTATGTATCCTTTATGTATCCATTCTTGGAGTCTTTTTTGTTGAGGATTCTTGGGAGGGAGTCTCACATTGGCTAATTAAAGAGATGATCATGGGTTTATAAGTAAGGAATATATCTCCATTGATATGAGGCTTTTTAGGGAGACCATAAGTAAAGCCATGAGAGCTTATGCTCAAGGTGGACAATATCATACAATTGTAGAGGTTCGCGATTCCTAACATGGTATTAGTGTCATGCTCTTAACTTAGCCATACTAATCGAATCCTCAAGTGTCGAACAAAGGGTGTACTTCTGGAGCTGAGCCTTGATAAATGGAGACTGTTTGAGGGCTACATAGGTTTAAAGGGAGACTTTATGAAGGGAGTCCCACATTGTAATTAAGGGGATAATCATGGGTTTATAAGTAAGGAATATATCTTCATTGGTATGAGGCCTTTAGGGAAAACCAAAAGTAAAGCCACGAGAGCTTATAATCAAAGTAGACAATATCATACCATTATGGAGGTTTGTGATTCCTAACATTTATGGGGTAGTGAAACCTGGAGACAGGCATGGTGAGGACTTTACTCTGTGCTATGCATATACTGTTACTCTTGCACTCTTATGACAAGCTAAGTTGTTAAAACTCTAAACCCGATTGAAATATTGTTCGAGCTTCCACTTAAGAAAGCCCAATTTTGATCATAGCTTTATTGTTAGATGAAATGTCTGCTTCTAATCCAAAATGTTTATGATTGTAGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGGTATGCTCATTATACCAATATTCGTAATCTGTCGATTCAACTCAAAGAATATATCATTGTTCTGAAATTATGAGTTAGCCTTGATTATCAGACCTTGAACTCCGTATGTTCCAATGAATGCTTGACAAATCATGTTTATAACCATTGCTGCATTTAGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGTGGAAATCTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAAGCTGATGCTTCTCTCTCTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTGACGACGAGAGAGACGACACTTAATGGTACAGTATCAACTTTGTTACGCTCTTATTTGCTCAGAACGTCGTATATTTTTATGAATCATATTACATGTTGGTACA

mRNA sequence

TGGATTATTTTAATTAATTGTCTGAATTAATTAATCGACACGACATCATTTCTGTGTTGCAATTTGCAGAGAGCGACGGCGAGAACCATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGAGACGAAGGGCTTAAAACAATAGTGGAAATCTGGATGCTGTTGTTATTGCTGCTGTAGCTTAATGGTACCTCACTCTTCAGTAAGCTGATGCTTCTCTCTCTTTTTTTTCATGGTTACAGATTAAGTCTTGTTTATTGTACATATAGACAAGTTGACGACGAGAGAGACGACACTTAATGGTACAGTATCAACTTTGTTACGCTCTTATTTGCTCAGAACGTCGTATATTTTTATGAATCATATTACATGTTGGTACA

Coding sequence (CDS)

ATGGAGGGTATCGAAGGGGAGAGAGGAGGAAGCCGATACTCACTGAAGCCATCGAGAATTAACAACGAAGACATTCTGTTCTGCATAGATGTGAACCCCGAATCCTCCGTCGAGATCAAAACCACCGGCTCTAATGGACGACCGATCACCAGAATGGACTCCATTAAGCAAGCAATTCTTCTCTTCGTCCACGCCAAACTCTCCATGAATCCCGACCACCGATTTGCCTTCACCACCATCGCCAAATCTGCCACTTGGCTCAAAAAAGATTTTAGCAGTGATATTGCATCTGTGGAAGCTGCAATCAGGGGGCTTGTTCCTACTTCCTCCTGCAGTCATGCCGATCTTACCAGCCTTTTTCGATTAGCTGCTCATGAAGCTAGAAAGTCGACCGCTCAGAATCATATTCTAAGAGTGATTCTTATATATTGTAGATCATCAACACGACCACAACATCAATGGCCTGTGAACCAAAAACTCTTCACTTTAGATGTTATCTACCTCCATGAGAAGCCTGGACCAGACAACTGCCCACAGGAGGTCTATGATGCCTTAGTTGATGCCCTTGATCTTGTCAGCCAGTATGAAGGCTATATTTTCGAGAGCGGCCAGGGAGTTGCACGTGTTCTTTACCGTTGCATGTGTTTGTTGTTATCACACCCCCAGCAACGAATATCACTAGACGATCTCAACATACCAAAGCTTCTTACAAAGAAAGTACCTCCTGCTGATTCCATCCCTGCAAACGAAGTTGTCCCTGTTACCAGCCAGTGA

Protein sequence

MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKVPPADSIPANEVVPVTSQ

Homology

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL
Match: A0A0A0L024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645930 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 1.3e-128
Identity = 231/257 (89.88%), Postives = 241/257 (93.77%), Query Frame = 1


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLK SR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKSSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSST+PQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPAD+ P NEVVPVTSQ
Sbjct: 241 PPADTAPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL
Match: A0A067GX29_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025034mg PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.3e-101
Identity = 180/257 (70.04%), Postives = 221/257 (85.99%), Query Frame = 1


Query: 1   MEGIEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEGIEGE  G+ R++L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL
Match: V4TU34_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009241mg PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 3.8e-101
Identity = 180/257 (70.04%), Postives = 220/257 (85.60%), Query Frame = 1


Query: 1   MEGIEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEGIEGE  G+ R +L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRLTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSARPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL
Match: A0A059CTV1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03005 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.4e-97
Identity = 175/261 (67.05%), Postives = 209/261 (80.08%), Query Frame = 1


Query: 1   MEGIEGERGG----SRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIK 60
           MEG+EG+        RY L P+RI++EDILFC+DV+ ES VE+K TG  GRP  R+D+IK
Sbjct: 28  MEGVEGDAAAVAAAPRYVLNPARISSEDILFCVDVDAESLVEMKVTGPGGRPFARLDAIK 87

Query: 61  QAILLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADL 120
           Q++LLFVH+KL++NPDHRFAF T++KSA WL+K+FSSD+ S  AAIR L  TS+C HADL
Sbjct: 88  QSLLLFVHSKLAINPDHRFAFATLSKSAAWLRKEFSSDVESAAAAIRSLSATSACGHADL 147

Query: 121 TSLFRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDN 180
           T LFR+AAHEA+KS  QN I RVILIYCRSS +PQHQWPVNQKLFTLDVIYLH+KPGPDN
Sbjct: 148 TQLFRIAAHEAKKSRMQNRIFRVILIYCRSSIQPQHQWPVNQKLFTLDVIYLHDKPGPDN 207

Query: 181 CPQEVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLL 240
           CPQ+VYDALVDAL+ VS+YEG+I ESGQG+ R+L+R MC+LL HPQQR   D L+IPK L
Sbjct: 208 CPQQVYDALVDALEHVSEYEGHIHESGQGLTRILFRHMCMLLLHPQQRCPQDYLDIPKSL 267

Query: 241 TKKVPPADSIPANEVVPVTSQ 258
            KK P ADS PA E   V  Q
Sbjct: 268 VKKSPAADSAPAEESAIVPRQ 288

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL
Match: A0A067KDB2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07693 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 7.5e-97
Identity = 176/257 (68.48%), Postives = 212/257 (82.49%), Query Frame = 1


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           +E  EG  G  RY+LKP+RIN+EDILFCIDV+ ES VE+KTTG  GRP+TR+DSIKQAIL
Sbjct: 4   VEAAEGS-GRGRYALKPTRINSEDILFCIDVDTESLVEMKTTGPTGRPLTRLDSIKQAIL 63

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LF++ KLS+NPDHRFAF T+AKSA+WL+K+FSSD+ S   A+R L  TSSC  ADLT LF
Sbjct: 64  LFINTKLSINPDHRFAFATLAKSASWLRKEFSSDVESAVTALRRLGATSSCGQADLTQLF 123

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           R+AAHEA+KS AQN ILRVIL YCRSS RP HQWP+NQKLFTLDV+YLH+KPGPDNCPQE
Sbjct: 124 RIAAHEAKKSHAQNRILRVILFYCRSSVRPHHQWPINQKLFTLDVMYLHDKPGPDNCPQE 183

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVD L+ VS+YEG+I+E+GQG+ R+L R + +LLSHPQQR   DD++IPK LTK+ 
Sbjct: 184 VYDALVDTLEHVSEYEGFIYETGQGL-RILLRYLSVLLSHPQQRCPQDDMDIPKSLTKRS 243

Query: 241 PPADSIPANEVVPVTSQ 258
           P  DS    + VPV+SQ
Sbjct: 244 PAGDSANGEDSVPVSSQ 258

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TAIR10
Match: AT4G32960.1 (AT4G32960.1 unknown protein)

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-92
Identity = 159/240 (66.25%), Postives = 196/240 (81.67%), Query Frame = 1


Query: 9   GGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLS 68
           G +RY+LKP RI +EDIL CIDV+ ES VE+KTTG+NGRP+ RM+ +KQAI+LF+H KLS
Sbjct: 12  GTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQAIILFIHNKLS 71

Query: 69  MNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEAR 128
           +NPDHRFAF T+AKSA WLKK+F+SD  S  A++RGL    S S ADLT LFR AA EA+
Sbjct: 72  INPDHRFAFATLAKSAAWLKKEFTSDAESAVASLRGLSGNKSSSRADLTLLFRAAAQEAK 131

Query: 129 KSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDA 188
            S AQN I RVILIYCRSS RP H+WP+NQKLFTLDV+YLH+KP PDNCPQ+VYD+LVDA
Sbjct: 132 VSRAQNRIFRVILIYCRSSMRPTHEWPLNQKLFTLDVMYLHDKPSPDNCPQDVYDSLVDA 191

Query: 189 LDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKVPPADSIPA 248
           ++ VS+YEGYIFESGQG+AR +++ M +LL+HPQQR + DDL+IP  L KKVP  ++  A
Sbjct: 192 VEHVSEYEGYIFESGQGLARSVFKPMSMLLTHPQQRCAQDDLDIPMSLAKKVPVTEAASA 251

[Close]

BLAST of Cp4.1LG02g06170.1 vs. TAIR10
Match: AT4G32970.1 (AT4G32970.1 unknown protein)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-72
Identity = 133/229 (58.08%), Postives = 172/229 (75.11%), Query Frame = 1


Query: 11  SRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAILLFVHAKLSMN 70
           +R S++PS    EDIL C+DV+ ES+VE+KTTG+NG+P+ R++ +K AI  F+H KLS N
Sbjct: 14  TRDSVEPS----EDILICVDVDAESTVEMKTTGTNGKPLNRLECLKLAITRFIHDKLSRN 73

Query: 71  PDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLFRLAAHEARKS 130
            DHRFAF T+++SA WLKK+FS+D  S  A++R +  T S   ADLT LF+ AA EA+ S
Sbjct: 74  SDHRFAFATLSQSAAWLKKEFSNDAKSAAASLREMSATRSSGPADLTFLFQEAAQEAKTS 133

Query: 131 TAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQEVYDALVDALD 190
            AQN ILRVIL+YCRSS RP H WP+NQKLFTLDV+YLH+K GPDNC  +VYD+LVDA++
Sbjct: 134 RAQNRILRVILMYCRSSVRPTHDWPINQKLFTLDVMYLHDKSGPDNCTHDVYDSLVDAIE 193

Query: 191 LVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
            VS+YEGYIFE   G+++ ++R M  LLSHP QR +  DL  PK   KK
Sbjct: 194 RVSEYEGYIFEGSHGLSQSVFRRMSTLLSHPPQRCAQVDL--PKPPAKK 236

[Close]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr
Match: gi|659103787|ref|XP_008452703.1| (PREDICTED: uncharacterized protein LOC103493644 [Cucumis melo])

HSP 1 Score: 473.0 bits (1216), Expect = 3.3e-130
Identity = 234/257 (91.05%), Postives = 242/257 (94.16%), Query Frame = 1


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLKPSR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKPSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSSTRPQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTRPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPADS P NEVVPVTSQ
Sbjct: 241 PPADSTPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr
Match: gi|449447101|ref|XP_004141308.1| (PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis sativus])

HSP 1 Score: 467.2 bits (1201), Expect = 1.8e-128
Identity = 231/257 (89.88%), Postives = 241/257 (93.77%), Query Frame = 1


Query: 1   MEGIEGERGGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60
           ME IE ERGGS YSLK SR+NNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL
Sbjct: 1   MEAIEVERGGSGYSLKSSRLNNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAIL 60

Query: 61  LFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSLF 120
           LFVHAKLSMNPDHRFAFTTIAKSA WLKK+FSSDIAS EAA+RGL  TS C+HADLTSLF
Sbjct: 61  LFVHAKLSMNPDHRFAFTTIAKSAIWLKKEFSSDIASAEAAVRGLGATSPCNHADLTSLF 120

Query: 121 RLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQE 180
           RLAAHE+RKSTAQN ILR+ILIYCRSST+PQHQWP NQKLFT DVIYLHEKPGPDNCPQE
Sbjct: 121 RLAAHESRKSTAQNRILRLILIYCRSSTQPQHQWPANQKLFTFDVIYLHEKPGPDNCPQE 180

Query: 181 VYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKKV 240
           VYDALVDALD VSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDL+IPK LTKK+
Sbjct: 181 VYDALVDALDHVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLDIPKPLTKKL 240

Query: 241 PPADSIPANEVVPVTSQ 258
           PPAD+ P NEVVPVTSQ
Sbjct: 241 PPADTAPPNEVVPVTSQ 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr
Match: gi|568844158|ref|XP_006475962.1| (PREDICTED: uncharacterized protein LOC102611871 [Citrus sinensis])

HSP 1 Score: 377.5 bits (968), Expect = 1.9e-101
Identity = 180/257 (70.04%), Postives = 221/257 (85.99%), Query Frame = 1


Query: 1   MEGIEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEGIEGE  G+ R++L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRFTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSVRPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr
Match: gi|567917584|ref|XP_006450798.1| (hypothetical protein CICLE_v10009241mg [Citrus clementina])

HSP 1 Score: 375.9 bits (964), Expect = 5.5e-101
Identity = 180/257 (70.04%), Postives = 220/257 (85.60%), Query Frame = 1


Query: 1   MEGIEGERGGS-RYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEGIEGE  G+ R +L P RI+NEDI+FC+DV+ ES VE+K+TG NG+PITR+D++KQAI
Sbjct: 1   MEGIEGESSGAGRLTLPPMRISNEDIIFCVDVDAESLVEMKSTGFNGKPITRLDAMKQAI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLFV++KLS+NPDHRFAF T+AK+A+WL+K+FSSDI S   A+RG+  TS+C  ADLT L
Sbjct: 61  LLFVNSKLSINPDHRFAFVTLAKTASWLRKEFSSDIESTLTAVRGISATSACGQADLTHL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           F+LA+HEA+KS AQN ILRVILIYCRSS RPQHQWPVNQKLFT+DV+YLH+KPGPDNCPQ
Sbjct: 121 FKLASHEAKKSRAQNRILRVILIYCRSSARPQHQWPVNQKLFTMDVLYLHDKPGPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
           +VYDALVDAL+ VS+ EGYIFESGQG+AR+L+R MC+LLSHPQQR   DD++IPK L KK
Sbjct: 181 KVYDALVDALEHVSENEGYIFESGQGLARILFRQMCVLLSHPQQRCVQDDVDIPKSLVKK 240

Query: 241 VPPADSIPANEVVPVTS 257
            P AD+    + VPVTS
Sbjct: 241 SPAADTTNGEDTVPVTS 257

[Close]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr
Match: gi|1009134342|ref|XP_015884395.1| (PREDICTED: uncharacterized protein LOC107420052 [Ziziphus jujuba])

HSP 1 Score: 372.9 bits (956), Expect = 4.6e-100
Identity = 182/258 (70.54%), Postives = 221/258 (85.66%), Query Frame = 1


Query: 1   MEGIEGER-GGSRYSLKPSRINNEDILFCIDVNPESSVEIKTTGSNGRPITRMDSIKQAI 60
           MEG+EG+R GGSRY+L+PSRI+NEDILFCIDV+PES VE+K +G NGRP+TR+DSIKQ+I
Sbjct: 1   MEGMEGDRSGGSRYTLRPSRISNEDILFCIDVDPESLVEMKISGPNGRPLTRLDSIKQSI 60

Query: 61  LLFVHAKLSMNPDHRFAFTTIAKSATWLKKDFSSDIASVEAAIRGLVPTSSCSHADLTSL 120
           LLF++AKL++NP+HRFAF T+ KSA+WL+K+FSS++ S  AA RGL  TSS  HADLT+L
Sbjct: 61  LLFINAKLTINPEHRFAFATLDKSASWLRKEFSSEVESAIAAFRGLSTTSSGGHADLTAL 120

Query: 121 FRLAAHEARKSTAQNHILRVILIYCRSSTRPQHQWPVNQKLFTLDVIYLHEKPGPDNCPQ 180
           FR+AAHEA+KS AQN I RVIL YCRSS RPQHQWPVNQKLFTLDV+YLH+KP PDNCPQ
Sbjct: 121 FRVAAHEAKKSRAQNRIFRVILFYCRSSIRPQHQWPVNQKLFTLDVVYLHDKPAPDNCPQ 180

Query: 181 EVYDALVDALDLVSQYEGYIFESGQGVARVLYRCMCLLLSHPQQRISLDDLNIPKLLTKK 240
            VYDALVDAL+ VS+YEGYI ESGQG+ARVL+R   +LLSHPQQR + D L+IPK LTKK
Sbjct: 181 VVYDALVDALEHVSEYEGYILESGQGLARVLFRFTYILLSHPQQRCAQDHLDIPKSLTKK 240

Query: 241 VPPADSIPANEVVPVTSQ 258
              +DS+P + +  V+SQ
Sbjct: 241 ATSSDSMPEDSIT-VSSQ 257

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g06170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g06170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L024_CUCSA	1.3e-128	89.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G645930 PE=4 SV=1	[more]
A0A067GX29_CITSI	1.3e-101	70.04	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025034mg PE=4 SV=1	[more]
V4TU34_9ROSI	3.8e-101	70.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009241mg PE=4 SV=1	[more]
A0A059CTV1_EUCGR	4.4e-97	67.05	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03005 PE=4 SV=1	[more]
A0A067KDB2_JATCU	7.5e-97	68.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07693 PE=4 SV=1	[more]

BLAST of Cp4.1LG02g06170.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G32960.1	4.9e-92	66.25	unknown protein	[more]
AT4G32970.1	1.5e-72	58.08	unknown protein	[more]

BLAST of Cp4.1LG02g06170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103787\|ref\|XP_008452703.1\|	3.3e-130	91.05	PREDICTED: uncharacterized protein LOC103493644 [Cucumis melo]	[more]
gi\|449447101\|ref\|XP_004141308.1\|	1.8e-128	89.88	PREDICTED: BRISC and BRCA1-A complex member 1 [Cucumis sativus]	[more]
gi\|568844158\|ref\|XP_006475962.1\|	1.9e-101	70.04	PREDICTED: uncharacterized protein LOC102611871 [Citrus sinensis]	[more]
gi\|567917584\|ref\|XP_006450798.1\|	5.5e-101	70.04	hypothetical protein CICLE_v10009241mg [Citrus clementina]	[more]
gi\|1009134342\|ref\|XP_015884395.1\|	4.6e-100	70.54	PREDICTED: uncharacterized protein LOC107420052 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0070552	BRISC complex
GO:0070531	BRCA1-A complex

Vocabulary: **Biological Process**
Term	Definition
GO:0045739	positive regulation of DNA repair

Vocabulary: **INTERPRO**
Term	Definition
IPR026126	BABAM1
IPR002035	VWF_A

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045739	positive regulation of DNA repair
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g06170	Cp4.1LG02g06170	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g06170.1:five_prime_utr:001	Cp4.1LG02g06170.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g06170.1:cds:001	Cp4.1LG02g06170.1:cds:001	CDS
Cp4.1LG02g06170.1:cds:002	Cp4.1LG02g06170.1:cds:002	CDS
Cp4.1LG02g06170.1:cds:003	Cp4.1LG02g06170.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g06170.1:three_prime_utr:001	Cp4.1LG02g06170.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g06170.1	Cp4.1LG02g06170.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	unknown	SSF53300	vWA-like	coord: 25..142 score: 1.0
IPR026126	BRISC and BRCA1-A complex member 1	PANTHER	PTHR15660	UNCHARACTERIZED	coord: 11..257 score: 2.2E
None	No IPR available	PANTHER	PTHR15660:SF1	BRISC AND BRCA1-A COMPLEX MEMBER 1	coord: 11..257 score: 2.2E