Cp4.1LG01g22370.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCCTCACCTCAAACAACATCAACACTGCCATCTAAAAATGATTTGCCTCCTCATTTTAATCGCTCTCAACTTCAGTCTCCTCGACCTCTCACAGGCCAGGCACCACAACAACCTCCCTTCCGCCGCAGTCGTCGGTACCGTCTTCTGCGACACGTGTTTTCAAGACACGTTTTCTAAGACAAGTCACTTCATTTCAGGTACTTTACCAACTAGCTCGTAGAGTTAATATGATGTTGGTTTGTTCATATATTGATGTGTACTATTTAGGCGCGACGGTGGCTGTCGAATGTGGCAATGGGGGATCGAACCCGAGTTTTAGAGACGAAGTAAAGACAGACAAAACAGGGGAATTCAAGATTCAGCTGCCAGTTTCAGTGAGGAAGATTGAGGAATGTTATGTGCGGTTAATAAGAAGCAGTGAACCATATTGTGCGGTGGCTGCAAGAGCCAAATCATCATCGCTTAAGCTCAAGTCAAGAAAACAAGGCATGCATGTGTTCTCGGCTGGATTCTTCACTTTCAAGCCTCTTAAACAGCCAAAACTTTGCAGCCATAACTCACATTTTAATGAATTTGATGACACGAAACAAGTCGTTGACTTCCCGGGGTTACCGGCTCCGATCCAGAACCCGACCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCGCCTCTACCTCTTCTTCCTGGACTTCCTCCATTGCCTCAACTTCCTCCTCTCCCTCCTCTTCCACCTCTCCCTGTTTTTCCATTGTTTCCACCAAAAAAGGATGATGAAAATGTACAAACTCCAAAGATAAGTCAAAACCCGGACCTGTTTCATCCACAAACTCTCCTTCCAATTCCATCTTTAAAGCCTTTCAGGCCACATTTTGTTATGCCTCCACATAAGCTGCGCCACCATCCTCTCACGCATGGTCCTACACCGCCCTCAGCCGCTGCCGCGGCGGGCGAGTTGGCTCCGTCCCCGCCGCTCCCTTTTTCACTCCCATCCATCCCTAACATGCCCGAGATCTCCTCACCTCCAAAGCAAACTTCTCCTTAAAAAATTATAACGACCCTAGTTTTCGAAGGACCATCGTCACAAAAATAAAACTTTAAATTAGTAATTTTTACTTGAACTGATGTACTTATTTTCTAGTACGAATTAATAATCGTGAAGGAAATTATCAATGAATTTGAGAGTAAATTGTGGGATTTGACGTTTTGGATAAGATTGATCATATAATTATTCAAATGTCAAATAGATTAAATTGGACGATTGATCCAATTGCTTTTGTTTGTTATAGATTTTGTTCTTTTGTGATCAATAATTTGAATACGTTATATTATTTTTCTAAATTTTGTTTAAAAAAAAAAAAAAATCGTTGTAAAAGGATATAAATTCGGACCTTAGAAAAAAAGAAGTGAAATCTTTTCCAAGCAAGAACAAAATTATTTTATCCTTTTTGGCACGAGACAAATTATACATTTGATTGGAGAGGGGATAATAAATGTTGTTATCGGTTGATGAAGATTCAAATCCCGAAAATAAATTTAGGTTGGAATTGGTACCAAATTCTAAATTGGTAGCAGTTCTTGGGGGAGTAGAACATAGTGGAGATTAAATTAGAGCGTTCTATCGAACAAAACCATCGAAGCAAAGGAGTCACCGGGAGCGCGATATAGAGATAAACAGAGGGAAAGAGGGGAAGAGGGCAGTAGCTTTATTTTCGCGGAATTCGTAGCTTTAATTTCATCGCCTTCAATTCCTTTTTCCAATCTAAACGCCCCTTCAAACGCGCAATCTTGATTTAGCTTGAAATCCCAATTATCTGCGTGCGTGATTTTTCCCAAAAAGTGCACGTATATATTTTCCGTATATTCTCCCAATTTCCGTCTTCCAGGTTTCTCTGTCCTCCACCCACCCACCCAC TTCCTCACCTCAAACAACATCAACACTGCCATCTAAAAATGATTTGCCTCCTCATTTTAATCGCTCTCAACTTCAGTCTCCTCGACCTCTCACAGGCCAGGCACCACAACAACCTCCCTTCCGCCGCAGTCGTCGGTACCGTCTTCTGCGACACGTGTTTTCAAGACACGTTTTCTAAGACAAGTCACTTCATTTCAGGCGCGACGGTGGCTGTCGAATGTGGCAATGGGGGATCGAACCCGAGTTTTAGAGACGAAGTAAAGACAGACAAAACAGGGGAATTCAAGATTCAGCTGCCAGTTTCAGTGAGGAAGATTGAGGAATGTTATGTGCGGTTAATAAGAAGCAGTGAACCATATTGTGCGGTGGCTGCAAGAGCCAAATCATCATCGCTTAAGCTCAAGTCAAGAAAACAAGGCATGCATGTGTTCTCGGCTGGATTCTTCACTTTCAAGCCTCTTAAACAGCCAAAACTTTGCAGCCATAACTCACATTTTAATGAATTTGATGACACGAAACAAGTCGTTGACTTCCCGGGGTTACCGGCTCCGATCCAGAACCCGACCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCGCCTCTACCTCTTCTTCCTGGACTTCCTCCATTGCCTCAACTTCCTCCTCTCCCTCCTCTTCCACCTCTCCCTGTTTTTCCATTGTTTCCACCAAAAAAGGATGATGAAAATGTACAAACTCCAAAGATAAGTCAAAACCCGGACCTGTTTCATCCACAAACTCTCCTTCCAATTCCATCTTTAAAGCCTTTCAGGCCACATTTTGTTATGCCTCCACATAAGCTGCGCCACCATCCTCTCACGCATGGTCCTACACCGCCCTCAGCCGCTGCCGCGGCGGGCGAGTTGGCTCCGTCCCCGCCGCTCCCTTTTTCACTCCCATCCATCCCTAACATGCCCGAGATCTCCTCACCTCCAAAGCAAACTTCTCCTTAAAAAATTATAACGACCCTAGTTTTCGAAGGACCATCGTCACAAAAATAAAACTTTAAATTAGTAATTTTTACTTGAACTGATGTACTTATTTTCTAGTACGAATTAATAATCGTGAAGGAAATTATCAATGAATTTGAGAGTAAATTGTGGGATTTGACGTTTTGGATAAGATTGATCATATAATTATTCAAATGTCAAATAGATTAAATTGGACGATTGATCCAATTGCTTTTGTTTGTTATAGATTTTGTTCTTTTGTGATCAATAATTTGAATACGTTATATTATTTTTCTAAATTTTGTTTAAAAAAAAAAAAAAATCGTTGTAAAAGGATATAAATTCGGACCTTAGAAAAAAAGAAGTGAAATCTTTTCCAAGCAAGAACAAAATTATTTTATCCTTTTTGGCACGAGACAAATTATACATTTGATTGGAGAGGGGATAATAAATGTTGTTATCGGTTGATGAAGATTCAAATCCCGAAAATAAATTTAGGTTGGAATTGGTACCAAATTCTAAATTGGTAGCAGTTCTTGGGGGAGTAGAACATAGTGGAGATTAAATTAGAGCGTTCTATCGAACAAAACCATCGAAGCAAAGGAGTCACCGGGAGCGCGATATAGAGATAAACAGAGGGAAAGAGGGGAAGAGGGCAGTAGCTTTATTTTCGCGGAATTCGTAGCTTTAATTTCATCGCCTTCAATTCCTTTTTCCAATCTAAACGCCCCTTCAAACGCGCAATCTTGATTTAGCTTGAAATCCCAATTATCTGCGTGCGTGATTTTTCCCAAAAAGTGCACGTATATATTTTCCGTATATTCTCCCAATTTCCGTCTTCCAGGTTTCTCTGTCCTCCACCCACCCACCCAC ATGATTTGCCTCCTCATTTTAATCGCTCTCAACTTCAGTCTCCTCGACCTCTCACAGGCCAGGCACCACAACAACCTCCCTTCCGCCGCAGTCGTCGGTACCGTCTTCTGCGACACGTGTTTTCAAGACACGTTTTCTAAGACAAGTCACTTCATTTCAGGCGCGACGGTGGCTGTCGAATGTGGCAATGGGGGATCGAACCCGAGTTTTAGAGACGAAGTAAAGACAGACAAAACAGGGGAATTCAAGATTCAGCTGCCAGTTTCAGTGAGGAAGATTGAGGAATGTTATGTGCGGTTAATAAGAAGCAGTGAACCATATTGTGCGGTGGCTGCAAGAGCCAAATCATCATCGCTTAAGCTCAAGTCAAGAAAACAAGGCATGCATGTGTTCTCGGCTGGATTCTTCACTTTCAAGCCTCTTAAACAGCCAAAACTTTGCAGCCATAACTCACATTTTAATGAATTTGATGACACGAAACAAGTCGTTGACTTCCCGGGGTTACCGGCTCCGATCCAGAACCCGACCGTGCCGAACGTTCCTCGGATTTACGATAACCTTCCGCCTCTACCTCTTCTTCCTGGACTTCCTCCATTGCCTCAACTTCCTCCTCTCCCTCCTCTTCCACCTCTCCCTGTTTTTCCATTGTTTCCACCAAAAAAGGATGATGAAAATGTACAAACTCCAAAGATAAGTCAAAACCCGGACCTGTTTCATCCACAAACTCTCCTTCCAATTCCATCTTTAAAGCCTTTCAGGCCACATTTTGTTATGCCTCCACATAAGCTGCGCCACCATCCTCTCACGCATGGTCCTACACCGCCCTCAGCCGCTGCCGCGGCGGGCGAGTTGGCTCCGTCCCCGCCGCTCCCTTTTTCACTCCCATCCATCCCTAACATGCCCGAGATCTCCTCACCTCCAAAGCAAACTTCTCCTTAA MICLLILIALNFSLLDLSQARHHNNLPSAAVVGTVFCDTCFQDTFSKTSHFISGATVAVECGNGGSNPSFRDEVKTDKTGEFKIQLPVSVRKIEECYVRLIRSSEPYCAVAARAKSSSLKLKSRKQGMHVFSAGFFTFKPLKQPKLCSHNSHFNEFDDTKQVVDFPGLPAPIQNPTVPNVPRIYDNLPPLPLLPGLPPLPQLPPLPPLPPLPVFPLFPPKKDDENVQTPKISQNPDLFHPQTLLPIPSLKPFRPHFVMPPHKLRHHPLTHGPTPPSAAAAAGELAPSPPLPFSLPSIPNMPEISSPPKQTSP
BLAST of Cp4.1LG01g22370.1 vs. TrEMBL
Match: A0A0A0KXM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G642130 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 1.7e-90 Identity = 194/305 (63.61%), Postives = 219/305 (71.80%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TrEMBL
Match: B9SIV7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0790500 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.2e-59 Identity = 153/333 (45.95%), Postives = 195/333 (58.56%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TrEMBL
Match: A0A067FY85_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019020mg PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 7.5e-59 Identity = 165/347 (47.55%), Postives = 197/347 (56.77%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TrEMBL
Match: V4UWT1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012100mg PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 3.7e-58 Identity = 165/347 (47.55%), Postives = 196/347 (56.48%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TrEMBL
Match: U5FLV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13490g PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57 Identity = 154/320 (48.12%), Postives = 194/320 (60.62%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TAIR10
Match: AT5G15780.1 (AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 175.3 bits (443), Expect = 6.1e-44 Identity = 136/322 (42.24%), Postives = 175/322 (54.35%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TAIR10
Match: AT5G13140.1 (AT5G13140.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 59.7 bits (143), Expect = 3.7e-09 Identity = 57/205 (27.80%), Postives = 95/205 (46.34%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TAIR10
Match: AT5G47635.1 (AT5G47635.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06 Identity = 35/114 (30.70%), Postives = 53/114 (46.49%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. TAIR10
Match: AT1G29140.1 (AT1G29140.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 49.7 bits (117), Expect = 3.9e-06 Identity = 29/101 (28.71%), Postives = 51/101 (50.50%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. NCBI nr
Match: gi|778708779|ref|XP_011656281.1| (PREDICTED: proline-rich protein 4-like [Cucumis sativus]) HSP 1 Score: 340.9 bits (873), Expect = 2.4e-90 Identity = 194/305 (63.61%), Postives = 219/305 (71.80%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. NCBI nr
Match: gi|645248450|ref|XP_008230302.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Prunus mume]) HSP 1 Score: 243.0 bits (619), Expect = 6.7e-61 Identity = 163/326 (50.00%), Postives = 191/326 (58.59%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. NCBI nr
Match: gi|1009127424|ref|XP_015880688.1| (PREDICTED: proline-rich protein 4 [Ziziphus jujuba]) HSP 1 Score: 239.6 bits (610), Expect = 7.4e-60 Identity = 169/345 (48.99%), Postives = 202/345 (58.55%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. NCBI nr
Match: gi|659118972|ref|XP_008459405.1| (PREDICTED: major pollen allergen Lol p 11 [Cucumis melo]) HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59 Identity = 120/171 (70.18%), Postives = 135/171 (78.95%), Query Frame = 1
BLAST of Cp4.1LG01g22370.1 vs. NCBI nr
Match: gi|255569926|ref|XP_002525926.1| (PREDICTED: proline-rich protein 4 [Ricinus communis]) HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59 Identity = 153/333 (45.95%), Postives = 195/333 (58.56%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
|