Cp4.1LG01g19030.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g19030.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 16212923 .. 16213291 (+)
Sequence length369
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGATGATGAAATCAGACCAAAATGCTTTCGTCCCTCCGTTGACAATACTTTTGAAGCCCATTTTGTATTTGTCTTTGAACACTCTCTCAATCTTGTTGATATTATCTGGAAGAAGTGAGGGAGGGGGGGTTGGTTTGATTTTCGATGGCTTATCCAGTCCTTCCTCTGCCTTTGATGCCTTCGTTTTGTCCATTACCTTTGCTTTCTTAGGTGCTTTGGGTGCTCTTTTGATTCCTCATAAACCCAACTTAGCTACCTTTTATACCTTGTATTCTGTGGCTTCCATGGCTTCTGCTTTGCTCCTGCTGATTTGGGGGCTCTATTACTCATTCGGTCATGGCAGATACTCTGCTACTGCCTAG

mRNA sequence

ATGAAGGAGATGATGAAATCAGACCAAAATGCTTTCGTCCCTCCGTTGACAATACTTTTGAAGCCCATTTTGTATTTGTCTTTGAACACTCTCTCAATCTTGTTGATATTATCTGGAAGAAGTGAGGGAGGGGGGGTTGGTTTGATTTTCGATGGCTTATCCAGTCCTTCCTCTGCCTTTGATGCCTTCGTTTTGTCCATTACCTTTGCTTTCTTAGGTGCTTTGGGTGCTCTTTTGATTCCTCATAAACCCAACTTAGCTACCTTTTATACCTTGTATTCTGTGGCTTCCATGGCTTCTGCTTTGCTCCTGCTGATTTGGGGGCTCTATTACTCATTCGGTCATGGCAGATACTCTGCTACTGCCTAG

Coding sequence (CDS)

ATGAAGGAGATGATGAAATCAGACCAAAATGCTTTCGTCCCTCCGTTGACAATACTTTTGAAGCCCATTTTGTATTTGTCTTTGAACACTCTCTCAATCTTGTTGATATTATCTGGAAGAAGTGAGGGAGGGGGGGTTGGTTTGATTTTCGATGGCTTATCCAGTCCTTCCTCTGCCTTTGATGCCTTCGTTTTGTCCATTACCTTTGCTTTCTTAGGTGCTTTGGGTGCTCTTTTGATTCCTCATAAACCCAACTTAGCTACCTTTTATACCTTGTATTCTGTGGCTTCCATGGCTTCTGCTTTGCTCCTGCTGATTTGGGGGCTCTATTACTCATTCGGTCATGGCAGATACTCTGCTACTGCCTAG

Protein sequence

MKEMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSSPSSAFDAFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYSFGHGRYSATA
Homology
[Close]
BLAST of Cp4.1LG01g19030.1 vs. TrEMBL
Match: A0A0A0KN11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.0e-19
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 3   EMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSSPSSAFDA 62
           E MKS+Q +     T LL  IL++S NTL+IL+ LS RS+     +IF+ LS PS AFDA
Sbjct: 6   EKMKSNQISS----TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDA 65

Query: 63  FVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYY 112
           FVLSITF+F  ALGALLIP+KP LA +Y  YSVA MA AL LLI GLYY
Sbjct: 66  FVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

[Close]
BLAST of Cp4.1LG01g19030.1 vs. TrEMBL
Match: A0A0A0KLQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-18
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1 

Query: 2   KEMMKSDQNAFVPPL-------TILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLS 61
           KE+MK      +  L       TI+LK IL+LSLN+L+ILL+ +G + G    +IF G  
Sbjct: 9   KEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT---VIFHGF- 68

Query: 62  SPSSAFDAFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYSFG 118
            PSSA DAF++SI FAF GAL ALL+P +  LA F  LYS+AS+ASALLLLIWGLY++  
Sbjct: 69  -PSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLI 126

[Close]
BLAST of Cp4.1LG01g19030.1 vs. NCBI nr
Match: gi|700194630|gb|KGN49807.1| (hypothetical protein Csa_5G137400 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1 

Query: 3   EMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSSPSSAFDA 62
           E MKS+Q +     T LL  IL++S NTL+IL+ LS RS+     +IF+ LS PS AFDA
Sbjct: 6   EKMKSNQISS----TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDA 65

Query: 63  FVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYY 112
           FVLSITF+F  ALGALLIP+KP LA +Y  YSVA MA AL LLI GLYY
Sbjct: 66  FVLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

[Close]
BLAST of Cp4.1LG01g19030.1 vs. NCBI nr
Match: gi|700194632|gb|KGN49809.1| (hypothetical protein Csa_5G137420 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 8.0e-18
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1 

Query: 2   KEMMKSDQNAFVPPL-------TILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLS 61
           KE+MK      +  L       TI+LK IL+LSLN+L+ILL+ +G + G    +IF G  
Sbjct: 9   KEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGT---VIFHGF- 68

Query: 62  SPSSAFDAFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYSFG 118
            PSSA DAF++SI FAF GAL ALL+P +  LA F  LYS+AS+ASALLLLIWGLY++  
Sbjct: 69  -PSSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLI 126

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g19030.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g19030.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN11_CUCSA3.0e-1960.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137400 PE=4 SV=1[more]
A0A0A0KLQ9_CUCSA5.6e-1852.03Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137420 PE=4 SV=1[more]
BLAST of Cp4.1LG01g19030.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g19030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194630|gb|KGN49807.1|4.2e-1960.55hypothetical protein Csa_5G137400 [Cucumis sativus][more]
gi|700194632|gb|KGN49809.1|8.0e-1852.03hypothetical protein Csa_5G137420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g19030Cp4.1LG01g19030gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g19030.1:cds:001Cp4.1LG01g19030.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g19030.1Cp4.1LG01g19030.1-proteinpolypeptide