Cp4.1LG01g18210.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g18210.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 15423492 .. 15423914 (+)
Sequence length423
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCAATCTCCAGCTCGCTTCCCACTACCTCCTCCCTCACCATCTTCTCCCCCGCCGACTCCGCCTTTTCCCACTCCCCCCAGCCGCCTCTCTCCCTTCTCCAGTACAATCTCCTTCCTCACGCCTTATCTTTACAGAGCCTCCGGTATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCCGGCCGATTCCTCACCTCACTAACATTGATGATCGGATTTCACTCAACAATGTTACGGTTGATAAGCCGCCGCTTGGAATCGAGAAGTTCTTCAATCCGTTCTTCGAGAGTTGGGACGTGTTTACCAAGAGAATCATCCAGCCTGATCTTGATTGCCACGATTCTTCGATTCAGAACGATCTGGTCGGGCCTCCGGCGGCGCTGAGAAACAGAGGCTTGACGGTGATGGCTTGA

mRNA sequence

ATGTCTCTCAATCTCCAGCTCGCTTCCCACTACCTCCTCCCTCACCATCTTCTCCCCCGCCGACTCCGCCTTTTCCCACTCCCCCCAGCCGCCTCTCTCCCTTCTCCAGTACAATCTCCTTCCTCACGCCTTATCTTTACAGAGCCTCCGGTATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCCGGCCGATTCCTCACCTCACTAACATTGATGATCGGATTTCACTCAACAATGTTACGGTTGATAAGCCGCCGCTTGGAATCGAGAAGTTCTTCAATCCGTTCTTCGAGAGTTGGGACGTGTTTACCAAGAGAATCATCCAGCCTGATCTTGATTGCCACGATTCTTCGATTCAGAACGATCTGGTCGGGCCTCCGGCGGCGCTGAGAAACAGAGGCTTGACGGTGATGGCTTGA

Coding sequence (CDS)

ATGTCTCTCAATCTCCAGCTCGCTTCCCACTACCTCCTCCCTCACCATCTTCTCCCCCGCCGACTCCGCCTTTTCCCACTCCCCCCAGCCGCCTCTCTCCCTTCTCCAGTACAATCTCCTTCCTCACGCCTTATCTTTACAGAGCCTCCGGTATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCCGGCCGATTCCTCACCTCACTAACATTGATGATCGGATTTCACTCAACAATGTTACGGTTGATAAGCCGCCGCTTGGAATCGAGAAGTTCTTCAATCCGTTCTTCGAGAGTTGGGACGTGTTTACCAAGAGAATCATCCAGCCTGATCTTGATTGCCACGATTCTTCGATTCAGAACGATCTGGTCGGGCCTCCGGCGGCGCTGAGAAACAGAGGCTTGACGGTGATGGCTTGA

Protein sequence

MSLNLQLASHYLLPHHLLPRRLRLFPLPPAASLPSPVQSPSSRLIFTEPPVSTLRRQDLHHAFRPIPHLTNIDDRISLNNVTVDKPPLGIEKFFNPFFESWDVFTKRIIQPDLDCHDSSIQNDLVGPPAALRNRGLTVMA
Homology
[Close]
BLAST of Cp4.1LG01g18210.1 vs. TrEMBL
Match: A0A0A0KSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571500 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-10
Identity = 57/148 (38.51%), Postives = 70/148 (47.30%), Query Frame = 1 

Query: 5   LQLASHYLLPHHLLPRRLRLFPLPPAASLPSPVQSPSSRLIFTEPPVSTLRRQDLHHAFR 64
           L L  ++LLPH      LR  PL    S   P     SR +                   
Sbjct: 115 LSLLQYHLLPHAFSAESLRSLPLNAKISTMLP-----SRFLT------------------ 174

Query: 65  PIPHLTNIDDRISLNNVTVDKPPL---------GIEKFFNPFFESWDVFTKRIIQPDLDC 124
               +TN + RISLNNVTVD PP+         GIEK FNPFF+  +  +KRI+ PD +C
Sbjct: 175 ----VTNDETRISLNNVTVDSPPVYDDGSLIIFGIEKLFNPFFDISNASSKRIMHPDNEC 234

Query: 125 H---DSSIQNDLV-GPPAALRNRGLTVM 140
               DS I++  V    AALRNRG TVM
Sbjct: 235 RRRGDSEIESKPVEALAAALRNRGWTVM 235

[Close]
BLAST of Cp4.1LG01g18210.1 vs. NCBI nr
Match: gi|659074609|ref|XP_008437696.1| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-11
Identity = 60/149 (40.27%), Postives = 73/149 (48.99%), Query Frame = 1 

Query: 5   LQLASHYLLPHHLLPRRLRLFPLPPAASLPSPVQSPSSRLIFTEPPVSTLRRQDLHHAFR 64
           L L  ++LLPH   P  LR  PL    S   P     SR +                   
Sbjct: 37  LSLLQYHLLPHAFSPESLRSLPLNAKISTMLP-----SRFLT------------------ 96

Query: 65  PIPHLTNIDDRISLNNVTVDKPPL---------GIEKFFNPFFESWDVFTKRIIQPDLDC 124
               +TN + RISLNNVTVD PP+         GIEKFFNPFFE  +  +KRII P+ +C
Sbjct: 97  ----VTNDEIRISLNNVTVDTPPVYDDGSLIIFGIEKFFNPFFEISNSSSKRIIHPNNEC 156

Query: 125 ---HDSSIQ-NDLVGPPAALRNRGLTVMA 141
               DS I+ N +    AALRNRG +VMA
Sbjct: 157 RRRRDSVIESNPVEALAAALRNRGWSVMA 158

[Close]
BLAST of Cp4.1LG01g18210.1 vs. NCBI nr
Match: gi|700196330|gb|KGN51507.1| (hypothetical protein Csa_5G571500 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 9.2e-10
Identity = 57/148 (38.51%), Postives = 70/148 (47.30%), Query Frame = 1 

Query: 5   LQLASHYLLPHHLLPRRLRLFPLPPAASLPSPVQSPSSRLIFTEPPVSTLRRQDLHHAFR 64
           L L  ++LLPH      LR  PL    S   P     SR +                   
Sbjct: 115 LSLLQYHLLPHAFSAESLRSLPLNAKISTMLP-----SRFLT------------------ 174

Query: 65  PIPHLTNIDDRISLNNVTVDKPPL---------GIEKFFNPFFESWDVFTKRIIQPDLDC 124
               +TN + RISLNNVTVD PP+         GIEK FNPFF+  +  +KRI+ PD +C
Sbjct: 175 ----VTNDETRISLNNVTVDSPPVYDDGSLIIFGIEKLFNPFFDISNASSKRIMHPDNEC 234

Query: 125 H---DSSIQNDLV-GPPAALRNRGLTVM 140
               DS I++  V    AALRNRG TVM
Sbjct: 235 RRRGDSEIESKPVEALAAALRNRGWTVM 235

[Close]
BLAST of Cp4.1LG01g18210.1 vs. NCBI nr
Match: gi|778704032|ref|XP_004150482.2| (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 9.2e-10
Identity = 57/148 (38.51%), Postives = 70/148 (47.30%), Query Frame = 1 

Query: 5   LQLASHYLLPHHLLPRRLRLFPLPPAASLPSPVQSPSSRLIFTEPPVSTLRRQDLHHAFR 64
           L L  ++LLPH      LR  PL    S   P     SR +                   
Sbjct: 77  LSLLQYHLLPHAFSAESLRSLPLNAKISTMLP-----SRFLT------------------ 136

Query: 65  PIPHLTNIDDRISLNNVTVDKPPL---------GIEKFFNPFFESWDVFTKRIIQPDLDC 124
               +TN + RISLNNVTVD PP+         GIEK FNPFF+  +  +KRI+ PD +C
Sbjct: 137 ----VTNDETRISLNNVTVDSPPVYDDGSLIIFGIEKLFNPFFDISNASSKRIMHPDNEC 196

Query: 125 H---DSSIQNDLV-GPPAALRNRGLTVM 140
               DS I++  V    AALRNRG TVM
Sbjct: 197 RRRGDSEIESKPVEALAAALRNRGWTVM 197

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g18210.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18210.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSZ5_CUCSA6.4e-1038.51Uncharacterized protein OS=Cucumis sativus GN=Csa_5G571500 PE=4 SV=1[more]
BLAST of Cp4.1LG01g18210.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g18210.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074609|ref|XP_008437696.1|4.9e-1140.27PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo][more]
gi|700196330|gb|KGN51507.1|9.2e-1038.51hypothetical protein Csa_5G571500 [Cucumis sativus][more]
gi|778704032|ref|XP_004150482.2|9.2e-1038.51PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g18210Cp4.1LG01g18210gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g18210.1:cds:001Cp4.1LG01g18210.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g18210.1Cp4.1LG01g18210.1-proteinpolypeptide