Cp4.1LG01g06820.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTTTTAGTCTTGGCCACAAATAAAATTGATAGGAAAAGATGAAATTAAAAAAAAAAAAAAAAAAAAAAATTATGAATTTAGGCACTATTCCTCCAGAATTCTACATTTCCCGCATCTGTAATTGAAGCTGAAGATTGAAGGGTGGAGGACGACGACGAACAAGTGTAGAAGATGGGAACATTGGGAAAGGCAATCTACACCGTCGGATTCTGGATCCGAGAGACCGGCCAAGCCCTCGATCGCCTTGGTTGCCGCCTCCAAGGAAACCACTACTTTCAAGAACAACGTAACCTTCTTAATTTCCACATTCTTCTTTACGATCTTCGAAGTTTCACCATTTTAATTGCTATTAGTGTTCTATTTTCCCGCTGATTTCAATTTGGTGTAATCTTTTGAGCTAATCGATGAAATGGAAAGACGTCATTTTTCATAACTTCTGTTTGGCATTTTTCTGGGCAGAAATAAAACCGCAATGTATATTTTGTAGGCTTTTCTAGGAAATTTGATTTCGCATGCCCTTTTACATCTTGACTAGATTTCAAGGAATTCACATTCGAACGAGGATCTTTTTTGGTTGGACGAGATATGTAGAAGGCATGAACTTAGATATTGTAATGTGATGTTTCGGCTTGTAGATATGCGTAAGAGGAATGTGCATCTGTGTACATGTTTATCTGGAGAAACTAGTATTTTTATGACATGAGGGTGTTGGTTTAATTAGGTTTCCATATTCTTCAGTTTAGGCTGTTCATTAGCTAATCTTTCAGAAAATAGCACCATGAATTTAGAGTGCTAAAGTTAGATATTAATTGTAGAGAACTTCCACTTCAGGAAGCTGTAGAACTTCTTCATCCTCTATTGCTCCATGATTTGGGATTATAGTAGTTTGTGATCGATGAAGATTCTGGATGTTCATTATAGTAGTTTGTGATTGATAATACATCCTTTTGTCCGTCTTCTTTTCTTTTGAACTAGTACCTCCATTACTGAGAACCCCAATGTCAAAGAAAATAGATTACAAATTAATGGCTGTTCCCAAACACTTTGCAAGCAAGGTCTGACGCAAAATGCTTCTCAAAAGGACATGAAAAATGGAAATAGTGGAACATTGATGGTGCATTATGTTATTCTATGACTTCCCACCACCTCTTGAGGGGCATCTTTGCCATCCCTTTCACCACACCTATCACAAATAGCCATCACATCCACAAGTCACGATCATCTCTATGTGCACTTCTACCCCCCACAATGGTGTTTACCGTCATTTTTAAATTCAATTTTGGGCATGTATGTATTTCGTACTTGATTGAGGTTTTATTATATACACTGCAAAACTGTACATGCCTTGGAAATTCATCTGTTGAACCCTTGCTTTTTTTGTGCTAAGGTTGAGTCATGCAAATATTGAAAGGCTTTACGTAAATTATTCAAATGACATTAGCTAATAAAGAGTCTTATTTGTTTAGTATCTAGGCACAGGACGCTCATGAACGTATTTGACAAGGCTCCTGTAGTTGACAGTGATGCATTTGTGGCGCCTAGTGCATCTATCATTGGTGATGTGCAGGTGGGACGGGGGTCCTCCATTTGGTATGGCTGTGTTTTGAGAGGTAAACTTAACATTATTTTTCTGAGCGGAGAAACAATTTCATTGATGAATTAGCTTAAATTTTTCCACTTTTGATAGTTTCTTGGATTTGGTTATTTCTAATGCTCTCTATTGGTGTAAATGTGTTAGTCTTTCTTCTTTAATATCCAATTAGAAATCTTTCATGTAATTCACTTTTTGGTGTTAGAGGTAAGCTTAACAGTAGCCTCTCTGAATTTGAAGATGTTCATGTTATTTTTGATCACCCACCTACCCACCCACTAAGTTAGTTTTTCTGCTTTTCTACTTTCCAGAAATCCTGATTATGGGCTTTACGTCTTATGCAAATTGTTTAAGAGTACCTCATCCATAATCTTAACCCAAAATTGCCATTTTTAGGAAAAATATTATTGGCGTTTGAAATTCATTTGATTGAATGATTAGTGAGCTTGTTGAAGTAATGGTCACGCTGGAGAAAATATGATGAACGCATGTTTGGCACATCATGTTAAAAAATATGATAATCTGAAATTTCTTTGAGGCAAGAATATGAGAAGATCTCAAAGATGAAACTCATTGTAGAAGTTGTAAAAAAAATAAGTACAATTTTAGAAAATCAAAAGCCCAATGGTCATCAAATGGCGCCGTAAGTTTTAGTTTGTGATTAAGTATGAGGTCATGCAGATATTGAACTGTTTTTCCTGCATGCTTGCTTGTTCGTATTTACACATGTTTTGTGTTCCTAGGACTGATCTCTACCAGGACTCGTACTTTAATAGCTTTAAAGTTTAGAGGAACCTGCCAGTTTTTTTTTTTTTTTATGAGCAAAATGACCACTTCGTTGTTTGGCTGATGAGTATTTTAATGTAAATAGGACAATACTCCTGTTTATGCCAAAATTTGTTTGCGTGAGAACCAGTTGTTAAACAAGATTGCTTTTCTTCCTTACCTATCTTCTTCTGTATGTTTATATTTGTCTTAACTGCAAAATATTATGAAGGTGATGTTAACAGCATCAGTGTTGGCACTGGGACCAATATACAAGACAACTCATTAGTTCACGTAGCAAAATCCAATTTGAGTGGAAAGGTTTTACCAACTATCATTGGTGATAATGTTACTGTCGGTGAGTGATATAATCTCATTTCAAATTATGTATCCATCCCTTGAGAGGTGTGTGGTTATGGTTTCGAATTTGAACTAGACAGGTCACAGTGCTGTGTTACATGGATGTACTATCGAGGACGAGGCATTTGTGGGTATGGGAGCAACGTTGCTTGATGGAGTCTACGTAGAAAAACATGCAATGGTTGCTGCTGGAGCACTTGTGAGACAGAATACAAGGATCCCATGTGGAGAGGTCTCCCTATCTTATCATTTTACTTCGATATCTAGTGCTACCTTCTATGTTATCAATACTGCTTGGGTTCTGTCATGATTGAAGTAAAATATTCCGTGTTGCTAATGCAATCACAGGTATGGGGAGGAAATCCAGCAAGGTTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTTTCTCCCAGTCAGCCATTAATTATTCCAACTTATCACAGGTTCATGCAGCTGAAAATGTTAAGAGCTTTGATGAAATTGAATTTGAAAAGGTTCTTCGCAAGAAGTTTGCTCGTCGCGATGAAGAGTATGATTCGATGTTGGGCGTTGTTCGTGAAACCCCTCCAGAGCTTGTCCTTCCAGATAACATACTGGCTGATAAAGTACCAAGAGCTTCTTAAGACGTAATTTTTTAATGGAGGTGTTGCCCTTTGAAATATTTTGCTGATATTCATAAAAGACCCGACCTTCATCGCAAATAACATATGGAGGTTGGATGGATGAGCAAACGCCAAAGGTCACGAACAATGTCCTCTGGTTACAGCTCTAACAATCATCCTCCCCGAAACACCATCACTTTAGATGCTTCAATATTCTTGAAGCCATCCTTGGATTTGTTTCCAGGTTTTGAATAATTTTTTCACTGTTCCTGTTCGGAAATAAAGAACTTTTGGAAACAGGTGTATTTAAGGATTAAATCTATTTCGCTTCAACAGGCTTCTTGTTCTTATGTGTATCATATTTTTATAGATCTAACATGCAGTTCTAAACCTTAAAATTGTATTGGGAGTAGCAAAAGCCAACATTGGCATTGGCATTGGCATTGGCACCC TTTTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTTTTAGTCTTGGCCACAAATAAAATTGATAGGAAAAGATGAAATTAAAAAAAAAAAAAAAAAAAAAAATTATGAATTTAGGCACTATTCCTCCAGAATTCTACATTTCCCGCATCTGTAATTGAAGCTGAAGATTGAAGGGTGGAGGACGACGACGAACAAGTGTAGAAGATGGGAACATTGGGAAAGGCAATCTACACCGTCGGATTCTGGATCCGAGAGACCGGCCAAGCCCTCGATCGCCTTGGTTGCCGCCTCCAAGGAAACCACTACTTTCAAGAACAACTATCTAGGCACAGGACGCTCATGAACGTATTTGACAAGGCTCCTGTAGTTGACAGTGATGCATTTGTGGCGCCTAGTGCATCTATCATTGGTGATGTTAACAGCATCAGTGTTGGCACTGGGACCAATATACAAGACAACTCATTAGTTCACGTAGCAAAATCCAATTTGAGTGGAAAGGTTTTACCAACTATCATTGGTGATAATGTTACTGTCGGTCACAGTGCTGTGTTACATGGATGTACTATCGAGGACGAGGCATTTGTGGGTATGGGAGCAACGTTGCTTGATGGAGTCTACGTAGAAAAACATGCAATGGTTGCTGCTGGAGCACTTGTGAGACAGAATACAAGGATCCCATGTGGAGAGGTATGGGGAGGAAATCCAGCAAGGTTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTTTCTCCCAGTCAGCCATTAATTATTCCAACTTATCACAGGTTCATGCAGCTGAAAATGTTAAGAGCTTTGATGAAATTGAATTTGAAAAGGTTCTTCGCAAGAAGTTTGCTCGTCGCGATGAAGAGTATGATTCGATGTTGGGCGTTGTTCGTGAAACCCCTCCAGAGCTTGTCCTTCCAGATAACATACTGGCTGATAAAGTACCAAGAGCTTCTTAAGACGTAATTTTTTAATGGAGGTGTTGCCCTTTGAAATATTTTGCTGATATTCATAAAAGACCCGACCTTCATCGCAAATAACATATGGAGGTTGGATGGATGAGCAAACGCCAAAGGTCACGAACAATGTCCTCTGGTTACAGCTCTAACAATCATCCTCCCCGAAACACCATCACTTTAGATGCTTCAATATTCTTGAAGCCATCCTTGGATTTGTTTCCAGGTTTTGAATAATTTTTTCACTGTTCCTGTTCGGAAATAAAGAACTTTTGGAAACAGGTGTATTTAAGGATTAAATCTATTTCGCTTCAACAGGCTTCTTGTTCTTATGTGTATCATATTTTTATAGATCTAACATGCAGTTCTAAACCTTAAAATTGTATTGGGAGTAGCAAAAGCCAACATTGGCATTGGCATTGGCATTGGCACCC ATGGGAACATTGGGAAAGGCAATCTACACCGTCGGATTCTGGATCCGAGAGACCGGCCAAGCCCTCGATCGCCTTGGTTGCCGCCTCCAAGGAAACCACTACTTTCAAGAACAACTATCTAGGCACAGGACGCTCATGAACGTATTTGACAAGGCTCCTGTAGTTGACAGTGATGCATTTGTGGCGCCTAGTGCATCTATCATTGGTGATGTTAACAGCATCAGTGTTGGCACTGGGACCAATATACAAGACAACTCATTAGTTCACGTAGCAAAATCCAATTTGAGTGGAAAGGTTTTACCAACTATCATTGGTGATAATGTTACTGTCGGTCACAGTGCTGTGTTACATGGATGTACTATCGAGGACGAGGCATTTGTGGGTATGGGAGCAACGTTGCTTGATGGAGTCTACGTAGAAAAACATGCAATGGTTGCTGCTGGAGCACTTGTGAGACAGAATACAAGGATCCCATGTGGAGAGGTATGGGGAGGAAATCCAGCAAGGTTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTTTCTCCCAGTCAGCCATTAATTATTCCAACTTATCACAGGTTCATGCAGCTGAAAATGTTAAGAGCTTTGATGAAATTGAATTTGAAAAGGTTCTTCGCAAGAAGTTTGCTCGTCGCGATGAAGAGTATGATTCGATGTTGGGCGTTGTTCGTGAAACCCCTCCAGAGCTTGTCCTTCCAGATAACATACTGGCTGATAAAGTACCAAGAGCTTCTTAA MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNHYFQEQLSRHRTLMNVFDKAPVVDSDAFVAPSASIIGDVNSISVGTGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVYVEKHAMVAAGALVRQNTRIPCGEVWGGNPARFLRKLTEEEMAFFSQSAINYSNLSQVHAAENVKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPPELVLPDNILADKVPRAS
BLAST of Cp4.1LG01g06820.1 vs. Swiss-Prot
Match: GCA1_ARATH (Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 1.0e-115 Identity = 209/266 (78.57%), Postives = 229/266 (86.09%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. Swiss-Prot
Match: GCA2_ARATH (Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.2e-108 Identity = 193/270 (71.48%), Postives = 228/270 (84.44%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. Swiss-Prot
Match: GCA3_ARATH (Gamma carbonic anhydrase 3, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA3 PE=1 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 2.5e-98 Identity = 182/262 (69.47%), Postives = 210/262 (80.15%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 9.7e-34 Identity = 83/236 (35.17%), Postives = 132/236 (55.93%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. Swiss-Prot
Match: YRDA_SHIFL (Protein YrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.8e-24 Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TrEMBL
Match: A0A0A0KWN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046620 PE=4 SV=1) HSP 1 Score: 471.9 bits (1213), Expect = 5.0e-130 Identity = 240/271 (88.56%), Postives = 248/271 (91.51%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TrEMBL
Match: A0A0B0PEC8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08437 PE=4 SV=1) HSP 1 Score: 463.8 bits (1192), Expect = 1.4e-127 Identity = 232/271 (85.61%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TrEMBL
Match: A0A061DFL1_THECC (Gamma carbonic anhydrase 1, CA1 OS=Theobroma cacao GN=TCM_000346 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 2.3e-127 Identity = 234/271 (86.35%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TrEMBL
Match: A0A059ATF4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02417 PE=4 SV=1) HSP 1 Score: 463.0 bits (1190), Expect = 2.3e-127 Identity = 231/271 (85.24%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TrEMBL
Match: A0A0D2MHW9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G013500 PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 3.1e-127 Identity = 231/271 (85.24%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TAIR10
Match: AT1G19580.1 (AT1G19580.1 gamma carbonic anhydrase 1) HSP 1 Score: 417.5 bits (1072), Expect = 5.7e-117 Identity = 209/266 (78.57%), Postives = 229/266 (86.09%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TAIR10
Match: AT1G47260.1 (AT1G47260.1 gamma carbonic anhydrase 2) HSP 1 Score: 394.0 bits (1011), Expect = 6.8e-110 Identity = 193/270 (71.48%), Postives = 228/270 (84.44%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TAIR10
Match: AT5G66510.2 (AT5G66510.2 gamma carbonic anhydrase 3) HSP 1 Score: 355.5 bits (911), Expect = 2.7e-98 Identity = 182/273 (66.67%), Postives = 210/273 (76.92%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TAIR10
Match: AT3G48680.1 (AT3G48680.1 gamma carbonic anhydrase-like 2) HSP 1 Score: 106.7 bits (265), Expect = 2.2e-23 Identity = 62/165 (37.58%), Postives = 94/165 (56.97%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. TAIR10
Match: AT5G63510.2 (AT5G63510.2 gamma carbonic anhydrase like 1) HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19 Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. NCBI nr
Match: gi|449457524|ref|XP_004146498.1| (PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Cucumis sativus]) HSP 1 Score: 471.9 bits (1213), Expect = 7.2e-130 Identity = 240/271 (88.56%), Postives = 248/271 (91.51%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. NCBI nr
Match: gi|659102369|ref|XP_008452092.1| (PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Cucumis melo]) HSP 1 Score: 470.3 bits (1209), Expect = 2.1e-129 Identity = 239/271 (88.19%), Postives = 249/271 (91.88%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. NCBI nr
Match: gi|728843857|gb|KHG23300.1| (hypothetical protein F383_08437 [Gossypium arboreum]) HSP 1 Score: 463.8 bits (1192), Expect = 2.0e-127 Identity = 232/271 (85.61%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. NCBI nr
Match: gi|702467604|ref|XP_010029770.1| (PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]) HSP 1 Score: 463.0 bits (1190), Expect = 3.4e-127 Identity = 231/271 (85.24%), Postives = 246/271 (90.77%), Query Frame = 1
BLAST of Cp4.1LG01g06820.1 vs. NCBI nr
Match: gi|590703469|ref|XP_007046882.1| (Gamma carbonic anhydrase 1, CA1 [Theobroma cacao]) HSP 1 Score: 463.0 bits (1190), Expect = 3.4e-127 Identity = 234/271 (86.35%), Postives = 246/271 (90.77%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
|