Cp4.1LG01g06500.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG01g06500.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger protein, putative
LocationCp4.1LG01 : 71347 .. 72084 (-)
Sequence length738
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCACCAAAGTTGAATTTGGAATGGGAAGAAGATTCAGAAGTGAGCACCCAAGTTGCTTCTGACATGGCTGTACCTGAAGCAACCTCTAATCCCTCGAAGGACAGTAGTAGTACATCCTGCCTCACCAACTCGATAAAAGGTAATACCAATCAAGGTTTGGTTTCTGTTGACCTGACACTTCATTTCAACCCAAATGATGTCGACGCAAATGGTAGTGGTGAGACTAGTAGTGAAGCAGTTGGCCATGTTTCTGGCTCAACAAACCCCAGGATGTTCTCTTGCAATTACTGTCGACGTAAATTCTTTAGCTCTCAGGCCTTGGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCAAAGCGAGCGATGCGGATGGGTATGTTCTCTAATAGATATACTAGCTTGGCTTCACTTCCACTTCATGGTTCTGCATATCGGTCGCTCGGGATCCAAGCTCATGCTGCAGTGCACCATAAAATCTTACCTGCACAACGGCCATTTATTGCTAGAAATGGAGTCACGTTTGATGAAGGGTACATTGGAATGCCATTTTTTATGGAAGATGAGGATGTTGCTCCATTTTGGCCTGGGAGTTTCCGACGAGTAAACGAGAGATCTACTGGTTCTATGCCTGGGGAAGTATCTCAAGTTCCAAGTCCAAAATCTGGTACGAGCATGGCACCGCCGAAAATGAGTTGTTCGCCTGATCTTACTTTAAGACTCTAA

mRNA sequence

ATGCAATCACCAAAGTTGAATTTGGAATGGGAAGAAGATTCAGAAGTGAGCACCCAAGTTGCTTCTGACATGGCTGTACCTGAAGCAACCTCTAATCCCTCGAAGGACAGTAGTAGTACATCCTGCCTCACCAACTCGATAAAAGGTAATACCAATCAAGGTTTGGTTTCTGTTGACCTGACACTTCATTTCAACCCAAATGATGTCGACGCAAATGGTAGTGGTGAGACTAGTAGTGAAGCAGTTGGCCATGTTTCTGGCTCAACAAACCCCAGGATGTTCTCTTGCAATTACTGTCGACGTAAATTCTTTAGCTCTCAGGCCTTGGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCAAAGCGAGCGATGCGGATGGGTATGTTCTCTAATAGATATACTAGCTTGGCTTCACTTCCACTTCATGGTTCTGCATATCGGTCGCTCGGGATCCAAGCTCATGCTGCAGTGCACCATAAAATCTTACCTGCACAACGGCCATTTATTGCTAGAAATGGAGTCACGTTTGATGAAGGGTACATTGGAATGCCATTTTTTATGGAAGATGAGGATGTTGCTCCATTTTGGCCTGGGAGTTTCCGACGAGTAAACGAGAGATCTACTGGTTCTATGCCTGGGGAAGTATCTCAAGTTCCAAGTCCAAAATCTGGTACGAGCATGGCACCGCCGAAAATGAGTTGTTCGCCTGATCTTACTTTAAGACTCTAA

Coding sequence (CDS)

ATGCAATCACCAAAGTTGAATTTGGAATGGGAAGAAGATTCAGAAGTGAGCACCCAAGTTGCTTCTGACATGGCTGTACCTGAAGCAACCTCTAATCCCTCGAAGGACAGTAGTAGTACATCCTGCCTCACCAACTCGATAAAAGGTAATACCAATCAAGGTTTGGTTTCTGTTGACCTGACACTTCATTTCAACCCAAATGATGTCGACGCAAATGGTAGTGGTGAGACTAGTAGTGAAGCAGTTGGCCATGTTTCTGGCTCAACAAACCCCAGGATGTTCTCTTGCAATTACTGTCGACGTAAATTCTTTAGCTCTCAGGCCTTGGGTGGCCACCAGAATGCTCATAAAAGGGAGAGGACAATGGCAAAGCGAGCGATGCGGATGGGTATGTTCTCTAATAGATATACTAGCTTGGCTTCACTTCCACTTCATGGTTCTGCATATCGGTCGCTCGGGATCCAAGCTCATGCTGCAGTGCACCATAAAATCTTACCTGCACAACGGCCATTTATTGCTAGAAATGGAGTCACGTTTGATGAAGGGTACATTGGAATGCCATTTTTTATGGAAGATGAGGATGTTGCTCCATTTTGGCCTGGGAGTTTCCGACGAGTAAACGAGAGATCTACTGGTTCTATGCCTGGGGAAGTATCTCAAGTTCCAAGTCCAAAATCTGGTACGAGCATGGCACCGCCGAAAATGAGTTGTTCGCCTGATCTTACTTTAAGACTCTAA

Protein sequence

MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDLTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFDEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKMSCSPDLTLRL
BLAST of Cp4.1LG01g06500.1 vs. Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-29
Identity = 103/267 (38.58%), Postives = 143/267 (53.56%), Query Frame = 1

Query: 4   PKLNLEWEEDS-EVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDLTL 63
           P L+LE E  S   S+QVAS+++       P   + S S   N+   N N  L S  LTL
Sbjct: 3   PILDLEIEASSGSSSSQVASNLSPVGEDYKPISLNLSLSFNNNN---NNNLDLESSSLTL 62

Query: 64  HFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTM 123
             +     +N   +   +       S + R+FSCNYC+RKF+SSQALGGHQNAHKRERT+
Sbjct: 63  PLSSTSESSNPEQQQQQQP------SVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTL 122

Query: 124 AKRAMRMGM---FSNRYTS-----------LASLPLHGS------AYRSLGIQAHAAVHH 183
           AKRAMRMG+   F  R +S           L+ LPLHGS      ++R+LGI+AH++ H 
Sbjct: 123 AKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHD 182

Query: 184 KILPAQRP-FIARNGVTFDEGYIG--MPFFMEDEDVAPFWPGSFRR-VNERSTGSMPGEV 243
             +  Q P  + RN   F++GY G  +PF++ED++    WPGSFR+  N  +  +    +
Sbjct: 183 VSMTRQTPETLIRNIARFNQGYFGNCIPFYVEDDEAEMLWPGSFRQATNAVAVEAGNDNL 242

Query: 244 SQVPSPKSGTSMAPPKMSCSPDLTLRL 246
            +          A    S  PDLTL+L
Sbjct: 243 GERKMDFLDVKQAMDMESSLPDLTLKL 260

BLAST of Cp4.1LG01g06500.1 vs. Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 97/234 (41.45%), Postives = 124/234 (52.99%), Query Frame = 1

Query: 34  SKDSSSTSCLTNSIKGNTNQGL-------VSVDLTLHFNPNDVDANGSGETSSEAVGHVS 93
           S D+S  +  +   + ++NQ L       VS+DL L    ND   + +  T  EA     
Sbjct: 4   SDDASRETPASRGGEASSNQDLSKPESNHVSLDLKL----NDTFNDDTKSTKCEA----- 63

Query: 94  GSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMG-MFSNR---YTSLASL 153
              NPR+FSCNYCRRKF+SSQALGGHQNAHKRERTMAKRAM MG MF +    YT  +S 
Sbjct: 64  ---NPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSS- 123

Query: 154 PLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFDEGYIG--MPFFMEDEDVAP--F 213
                   SLG+QAH+ + H  L   +P ++R      +GY G  +P F + +D     F
Sbjct: 124 --------SLGMQAHSGLLHHTLSQPQPLVSR---FHHQGYFGNTVPLFFDYDDGGSDFF 183

Query: 214 WPGSFRRVNERSTGSMPGEVSQVPSPKSGTSM-------APPKMSCSPDLTLRL 246
           WPGSFR+V E +       V  V S +SG  +            S  PDLTLRL
Sbjct: 184 WPGSFRQVVEEA----EAPVVVVASTESGLDLNSVAANGGVDNNSSKPDLTLRL 209

BLAST of Cp4.1LG01g06500.1 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.2e-18
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 1

Query: 74  SGETSSEAVGHVSGS----TNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAM-- 133
           S +TSS +  H         +PR+FSCNYC+RKF+SSQALGGHQNAHKRERT+AKR    
Sbjct: 44  SFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYY 103

Query: 134 RMGMFS-------------NRYTSLASLPLHGSAYR--SLGIQAHAAVH 162
           +M + S             +R+ S+ASLPLHGS     +LGIQAH+ +H
Sbjct: 104 KMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTLGIQAHSTIH 152

BLAST of Cp4.1LG01g06500.1 vs. Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.6e-17
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 1

Query: 52  NQGLVSVDLTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGG 111
           NQ +   +  +H + ++++     + ++  V   + ST  ++FSCNYC+R F+SSQALGG
Sbjct: 19  NQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGG 78

Query: 112 HQNAHKRERTMAKRAMRMGMFSNRY---TSLASLPLHG--SAYRSLGIQAHAAVH 162
           HQNAHKRERT+AKR  RM   ++ +      + LP HG  + +RSLGIQAH+  H
Sbjct: 79  HQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGIQAHSISH 133

BLAST of Cp4.1LG01g06500.1 vs. Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-12
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 58  VDLTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHK 117
           ++L L   P+ + ++ S  T+S      S    PR+FSCNYC+RKF+SSQALGGHQNAHK
Sbjct: 21  LNLELVLEPSSMSSSSSSSTNSS-----SCLEQPRVFSCNYCQRKFYSSQALGGHQNAHK 80

Query: 118 RERTMAKRAMRMGMFSNRYTSLASLPLHG 147
            ERT+AK++  +   SN   S    P  G
Sbjct: 81  LERTLAKKSRELFRSSNTVDSDQPYPFSG 104

BLAST of Cp4.1LG01g06500.1 vs. TrEMBL
Match: A0A0A0KMD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G255670 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.1e-86
Identity = 173/246 (70.33%), Postives = 195/246 (79.27%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDL 60
           M SP  NLE E+DSE+S++  SD A         KDS +TSCLTNSIK N +QGLVS+DL
Sbjct: 1   MGSPMFNLECEKDSEMSSKAFSDTA---------KDSGTTSCLTNSIKANHDQGLVSLDL 60

Query: 61  TLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRER 120
           TLHFN ND+DA GSGETSS+ VGH+SG T+ R+FSCNYC+RKFFSSQALGGHQNAHKRER
Sbjct: 61  TLHFNSNDIDAKGSGETSSDVVGHISGPTSLRIFSCNYCQRKFFSSQALGGHQNAHKRER 120

Query: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFD 180
           TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGI+AHAAVH KILP +RPF AR G   D
Sbjct: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIEAHAAVHRKILPGERPFSARPGAMID 180

Query: 181 EGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKMS-CSP 240
           +GYIGM +F+E++DV PFWPGSFRRVN     S   E S++PS  S T MAP   S  SP
Sbjct: 181 QGYIGMQYFVEEDDVGPFWPGSFRRVNGEFIDSTAREASEIPSLNSDTRMAPSTTSTSSP 237

Query: 241 DLTLRL 246
           DLTLRL
Sbjct: 241 DLTLRL 237

BLAST of Cp4.1LG01g06500.1 vs. TrEMBL
Match: F6HFB1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06200 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.5e-72
Identity = 149/248 (60.08%), Postives = 194/248 (78.23%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTS-CLTNSIKGNTNQGLVSVD 60
           M+ P  N+E E++SEVS+QVAS++++ E +S+PSKDS++TS CLTN IK   +QG VS+D
Sbjct: 1   MEPPNYNVESEDESEVSSQVASNVSIQETSSDPSKDSTTTSSCLTNLIKLQPDQGSVSLD 60

Query: 61  LTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRE 120
           LTL FNPND    G GE+SS+AV     +T P++FSCNYCRRKFFSSQALGGHQNAHKRE
Sbjct: 61  LTLCFNPNDTKLKGMGESSSDAVAQAPVATAPKVFSCNYCRRKFFSSQALGGHQNAHKRE 120

Query: 121 RTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTF 180
           RT+AKRAMRMGMF++RYTSL+SLPLHGSA+RSLGI+AH+++H +++P +RP   R G  F
Sbjct: 121 RTLAKRAMRMGMFADRYTSLSSLPLHGSAFRSLGIEAHSSLHQRMVPLERP-DTRGGARF 180

Query: 181 DEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKM--SC 240
           ++GY G+P F+EDE+   FWPGSFR++ ER  GS   E++Q P+  +   MAPP    S 
Sbjct: 181 EQGYYGLPVFIEDEEAELFWPGSFRQIGERVGGSAIPELAQGPN-INFVPMAPPPTTDSS 240

Query: 241 SPDLTLRL 246
           SPDLTL+L
Sbjct: 241 SPDLTLKL 246

BLAST of Cp4.1LG01g06500.1 vs. TrEMBL
Match: B9HJJ4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13730g PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-70
Identity = 144/247 (58.30%), Postives = 187/247 (75.71%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSS-TSCLTNSIKGNTNQGLVSVD 60
           M SPK   ++E D EVS+QVAS+++V E + +PSKDS++ +S LT+ +K   N   VS+D
Sbjct: 1   MISPKSKSDFENDLEVSSQVASNISVHELSPDPSKDSTTPSSYLTDLVKHQENSVPVSLD 60

Query: 61  LTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRE 120
           L+LHFN ++++  G+GETS E   H   +T PR+FSCNYCRRKF+SSQALGGHQNAHKRE
Sbjct: 61  LSLHFNSSEIELKGTGETSIEVAAHTPATTIPRVFSCNYCRRKFYSSQALGGHQNAHKRE 120

Query: 121 RTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTF 180
           RTMAKRAMRMGMFS+RYT+LASLPL+GSA+RSLGI+AHAA+H  I+ +Q P + R G  F
Sbjct: 121 RTMAKRAMRMGMFSDRYTNLASLPLNGSAFRSLGIKAHAAMHQSIIQSQTPPVTRGGARF 180

Query: 181 DEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKM-SCS 240
           ++GY GMP FMED+DV P+WPGSFRRV E   G+   E++Q P+        PP+  S +
Sbjct: 181 EQGYYGMPMFMEDDDVGPYWPGSFRRVGEAVGGNSGLELAQSPNMNFEARAPPPRTDSSA 240

Query: 241 PDLTLRL 246
           PDLTL+L
Sbjct: 241 PDLTLKL 247

BLAST of Cp4.1LG01g06500.1 vs. TrEMBL
Match: A0A061E8M6_THECC (Zinc finger protein 4 OS=Theobroma cacao GN=TCM_011244 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.4e-70
Identity = 149/251 (59.36%), Postives = 181/251 (72.11%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSST-SCLTNSIKGNTNQGLVSVD 60
           M  P   LE E DSE S+QVAS+++  EAT + SKDS++T SCLTN IK     G VS+D
Sbjct: 1   MTPPNPGLESENDSEASSQVASNISAQEATPDASKDSTTTASCLTNPIKAQPETGSVSLD 60

Query: 61  LTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRE 120
           LTLHF   D    G+G+T SE   H   +T PR+FSCNYCRRKF+SSQALGGHQNAHKRE
Sbjct: 61  LTLHFRATDAVMKGTGDTRSEIATHSLSATIPRVFSCNYCRRKFYSSQALGGHQNAHKRE 120

Query: 121 RTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTF 180
           RTMAKRAMRMG+FS+RYTSLASLPLHGS +RSLGI+AH+A+H  I+ +QRP   R G  F
Sbjct: 121 RTMAKRAMRMGIFSDRYTSLASLPLHGSTFRSLGIKAHSAMHQGIISSQRPIDTRAGARF 180

Query: 181 DEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSM----APPKM 240
           D+GY GMP FMED+DV  FWPGSFR+VNE  +G++  E +   +  S        +PP+ 
Sbjct: 181 DQGYFGMPMFMEDDDVDLFWPGSFRQVNEGVSGNLALEFAPNSTQSSNMGFVAMASPPRT 240

Query: 241 -SCSPDLTLRL 246
            S SPDLTL+L
Sbjct: 241 DSSSPDLTLKL 251

BLAST of Cp4.1LG01g06500.1 vs. TrEMBL
Match: V4UB17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016402mg PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.8e-69
Identity = 148/248 (59.68%), Postives = 183/248 (73.79%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDL 60
           M  P  NLE E DSEVS+ VAS+++  EA+  PSKD++S SCLTN IK N + G +S+DL
Sbjct: 1   MLPPNSNLELENDSEVSSHVASNISAKEASPGPSKDTNS-SCLTNVIKLNPDPGPLSLDL 60

Query: 61  TLHFNPNDVDA-NGSGETSSE-AVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKR 120
           TLHF  ND+D   G+GETS E A      +T PR+FSCNYCRRKF+SSQALGGHQNAHKR
Sbjct: 61  TLHFKSNDIDRLKGTGETSGEVAAAQTPAATVPRVFSCNYCRRKFYSSQALGGHQNAHKR 120

Query: 121 ERTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVT 180
           ERTMAKRAMRMG+FS+RYTSLASLPLHGSA+RSLGI+AHAA+H  ++P QRP   R G  
Sbjct: 121 ERTMAKRAMRMGIFSDRYTSLASLPLHGSAFRSLGIKAHAAMHQGVVPPQRPPDMRGGAR 180

Query: 181 FDEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKM-SC 240
           F++GY  MP FMED+D+  FWPGSFR+V+E   G+   + +Q  +        PP+  S 
Sbjct: 181 FEQGYFAMPMFMEDDDIDLFWPGSFRQVSEAVRGNPTLDFAQGSNGNFAAMPPPPRTDSS 240

Query: 241 SPDLTLRL 246
           +PDLTL+L
Sbjct: 241 APDLTLKL 247

BLAST of Cp4.1LG01g06500.1 vs. TAIR10
Match: AT1G66140.1 (AT1G66140.1 zinc finger protein 4)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-31
Identity = 103/267 (38.58%), Postives = 143/267 (53.56%), Query Frame = 1

Query: 4   PKLNLEWEEDS-EVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDLTL 63
           P L+LE E  S   S+QVAS+++       P   + S S   N+   N N  L S  LTL
Sbjct: 3   PILDLEIEASSGSSSSQVASNLSPVGEDYKPISLNLSLSFNNNN---NNNLDLESSSLTL 62

Query: 64  HFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTM 123
             +     +N   +   +       S + R+FSCNYC+RKF+SSQALGGHQNAHKRERT+
Sbjct: 63  PLSSTSESSNPEQQQQQQP------SVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTL 122

Query: 124 AKRAMRMGM---FSNRYTS-----------LASLPLHGS------AYRSLGIQAHAAVHH 183
           AKRAMRMG+   F  R +S           L+ LPLHGS      ++R+LGI+AH++ H 
Sbjct: 123 AKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLHGSGNGNMTSFRTLGIRAHSSAHD 182

Query: 184 KILPAQRP-FIARNGVTFDEGYIG--MPFFMEDEDVAPFWPGSFRR-VNERSTGSMPGEV 243
             +  Q P  + RN   F++GY G  +PF++ED++    WPGSFR+  N  +  +    +
Sbjct: 183 VSMTRQTPETLIRNIARFNQGYFGNCIPFYVEDDEAEMLWPGSFRQATNAVAVEAGNDNL 242

Query: 244 SQVPSPKSGTSMAPPKMSCSPDLTLRL 246
            +          A    S  PDLTL+L
Sbjct: 243 GERKMDFLDVKQAMDMESSLPDLTLKL 260

BLAST of Cp4.1LG01g06500.1 vs. TAIR10
Match: AT1G24625.1 (AT1G24625.1 zinc finger protein 7)

HSP 1 Score: 118.2 bits (295), Expect = 6.9e-27
Identity = 97/234 (41.45%), Postives = 124/234 (52.99%), Query Frame = 1

Query: 34  SKDSSSTSCLTNSIKGNTNQGL-------VSVDLTLHFNPNDVDANGSGETSSEAVGHVS 93
           S D+S  +  +   + ++NQ L       VS+DL L    ND   + +  T  EA     
Sbjct: 4   SDDASRETPASRGGEASSNQDLSKPESNHVSLDLKL----NDTFNDDTKSTKCEA----- 63

Query: 94  GSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMG-MFSNR---YTSLASL 153
              NPR+FSCNYCRRKF+SSQALGGHQNAHKRERTMAKRAM MG MF +    YT  +S 
Sbjct: 64  ---NPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSS- 123

Query: 154 PLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFDEGYIG--MPFFMEDEDVAP--F 213
                   SLG+QAH+ + H  L   +P ++R      +GY G  +P F + +D     F
Sbjct: 124 --------SLGMQAHSGLLHHTLSQPQPLVSR---FHHQGYFGNTVPLFFDYDDGGSDFF 183

Query: 214 WPGSFRRVNERSTGSMPGEVSQVPSPKSGTSM-------APPKMSCSPDLTLRL 246
           WPGSFR+V E +       V  V S +SG  +            S  PDLTLRL
Sbjct: 184 WPGSFRQVVEEA----EAPVVVVASTESGLDLNSVAANGGVDNNSSKPDLTLRL 209

BLAST of Cp4.1LG01g06500.1 vs. TAIR10
Match: AT1G80730.1 (AT1G80730.1 zinc-finger protein 1)

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-19
Identity = 55/109 (50.46%), Postives = 70/109 (64.22%), Query Frame = 1

Query: 74  SGETSSEAVGHVSGS----TNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAM-- 133
           S +TSS +  H         +PR+FSCNYC+RKF+SSQALGGHQNAHKRERT+AKR    
Sbjct: 44  SFKTSSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYY 103

Query: 134 RMGMFS-------------NRYTSLASLPLHGSAYR--SLGIQAHAAVH 162
           +M + S             +R+ S+ASLPLHGS     +LGIQAH+ +H
Sbjct: 104 KMTLSSLPSSAFAFGHGSVSRFASMASLPLHGSVNNRSTLGIQAHSTIH 152

BLAST of Cp4.1LG01g06500.1 vs. TAIR10
Match: AT5G25160.1 (AT5G25160.1 zinc finger protein 3)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 1

Query: 52  NQGLVSVDLTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGG 111
           NQ +   +  +H + ++++     + ++  V   + ST  ++FSCNYC+R F+SSQALGG
Sbjct: 19  NQSIEDEERDVHNSSHELNLIDCIDDTTSIVNESTTSTEQKLFSCNYCQRTFYSSQALGG 78

Query: 112 HQNAHKRERTMAKRAMRMGMFSNRY---TSLASLPLHG--SAYRSLGIQAHAAVH 162
           HQNAHKRERT+AKR  RM   ++ +      + LP HG  + +RSLGIQAH+  H
Sbjct: 79  HQNAHKRERTLAKRGQRMAASASAFGHPYGFSPLPFHGQYNNHRSLGIQAHSISH 133

BLAST of Cp4.1LG01g06500.1 vs. TAIR10
Match: AT5G10970.1 (AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 66/163 (40.49%), Postives = 83/163 (50.92%), Query Frame = 1

Query: 3   SPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDLTL 62
           SPKL+LE      V+ Q   D    E       D        +S +   NQ L       
Sbjct: 28  SPKLSLENYNIDTVAAQEEDDHDQKEGVEGIKLDLMLAGY--DSSQPQLNQEL------- 87

Query: 63  HFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRERTM 122
               N +D   +G  +    G  S ST  ++FSCNYC+R F+SSQALGGHQNAHKRERT+
Sbjct: 88  ----NLLDCLETGVVTPSFNG--STSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTL 147

Query: 123 AKRAMRM---GMFSNRYTSLASLPLHGS-AYRSLGIQAHAAVH 162
           AKR  RM     F + Y   A +P HG  + R+LGIQAH+  H
Sbjct: 148 AKRGQRMASAAAFGHPY-GFAPVPFHGQYSNRTLGIQAHSMSH 174

BLAST of Cp4.1LG01g06500.1 vs. NCBI nr
Match: gi|659114013|ref|XP_008456866.1| (PREDICTED: zinc finger protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.5e-87
Identity = 171/245 (69.80%), Postives = 194/245 (79.18%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDL 60
           M SP  NLE E+DSE+S +  SD A         KDS +TSCLTNSIK N +QGLVS+DL
Sbjct: 46  MGSPMFNLECEKDSEMSGKAFSDTA---------KDSGTTSCLTNSIKANPDQGLVSLDL 105

Query: 61  TLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRER 120
           TLHFN N++D+ GSGETSS+ V H+SG T+ R+FSCNYC+RKFFSSQALGGHQNAHKRER
Sbjct: 106 TLHFNSNNIDSKGSGETSSDVVAHISGPTSLRIFSCNYCQRKFFSSQALGGHQNAHKRER 165

Query: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFD 180
           TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGI+AHAAVH KILP +RPF AR G   D
Sbjct: 166 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIEAHAAVHRKILPGERPFSARPGAMID 225

Query: 181 EGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKMSCSPD 240
           +GYIG+P+F+E++DV PFWPGSFRRVN    GS P E S+ PSP S   M P   S SPD
Sbjct: 226 QGYIGVPYFVEEDDVGPFWPGSFRRVNGEFIGSKPQEESETPSPNSDMRMPPSTTSTSPD 281

Query: 241 LTLRL 246
           LTLRL
Sbjct: 286 LTLRL 281

BLAST of Cp4.1LG01g06500.1 vs. NCBI nr
Match: gi|659114015|ref|XP_008456867.1| (PREDICTED: zinc finger protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.5e-87
Identity = 171/245 (69.80%), Postives = 194/245 (79.18%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDL 60
           M SP  NLE E+DSE+S +  SD A         KDS +TSCLTNSIK N +QGLVS+DL
Sbjct: 1   MGSPMFNLECEKDSEMSGKAFSDTA---------KDSGTTSCLTNSIKANPDQGLVSLDL 60

Query: 61  TLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRER 120
           TLHFN N++D+ GSGETSS+ V H+SG T+ R+FSCNYC+RKFFSSQALGGHQNAHKRER
Sbjct: 61  TLHFNSNNIDSKGSGETSSDVVAHISGPTSLRIFSCNYCQRKFFSSQALGGHQNAHKRER 120

Query: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFD 180
           TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGI+AHAAVH KILP +RPF AR G   D
Sbjct: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIEAHAAVHRKILPGERPFSARPGAMID 180

Query: 181 EGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKMSCSPD 240
           +GYIG+P+F+E++DV PFWPGSFRRVN    GS P E S+ PSP S   M P   S SPD
Sbjct: 181 QGYIGVPYFVEEDDVGPFWPGSFRRVNGEFIGSKPQEESETPSPNSDMRMPPSTTSTSPD 236

Query: 241 LTLRL 246
           LTLRL
Sbjct: 241 LTLRL 236

BLAST of Cp4.1LG01g06500.1 vs. NCBI nr
Match: gi|449445314|ref|XP_004140418.1| (PREDICTED: zinc finger protein 4-like [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.6e-86
Identity = 173/246 (70.33%), Postives = 195/246 (79.27%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTSCLTNSIKGNTNQGLVSVDL 60
           M SP  NLE E+DSE+S++  SD A         KDS +TSCLTNSIK N +QGLVS+DL
Sbjct: 1   MGSPMFNLECEKDSEMSSKAFSDTA---------KDSGTTSCLTNSIKANHDQGLVSLDL 60

Query: 61  TLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRER 120
           TLHFN ND+DA GSGETSS+ VGH+SG T+ R+FSCNYC+RKFFSSQALGGHQNAHKRER
Sbjct: 61  TLHFNSNDIDAKGSGETSSDVVGHISGPTSLRIFSCNYCQRKFFSSQALGGHQNAHKRER 120

Query: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTFD 180
           TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGI+AHAAVH KILP +RPF AR G   D
Sbjct: 121 TMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIEAHAAVHRKILPGERPFSARPGAMID 180

Query: 181 EGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKMS-CSP 240
           +GYIGM +F+E++DV PFWPGSFRRVN     S   E S++PS  S T MAP   S  SP
Sbjct: 181 QGYIGMQYFVEEDDVGPFWPGSFRRVNGEFIDSTAREASEIPSLNSDTRMAPSTTSTSSP 237

Query: 241 DLTLRL 246
           DLTLRL
Sbjct: 241 DLTLRL 237

BLAST of Cp4.1LG01g06500.1 vs. NCBI nr
Match: gi|225424442|ref|XP_002285121.1| (PREDICTED: zinc finger protein 4-like [Vitis vinifera])

HSP 1 Score: 279.6 bits (714), Expect = 5.1e-72
Identity = 149/248 (60.08%), Postives = 194/248 (78.23%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSSTS-CLTNSIKGNTNQGLVSVD 60
           M+ P  N+E E++SEVS+QVAS++++ E +S+PSKDS++TS CLTN IK   +QG VS+D
Sbjct: 1   MEPPNYNVESEDESEVSSQVASNVSIQETSSDPSKDSTTTSSCLTNLIKLQPDQGSVSLD 60

Query: 61  LTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRE 120
           LTL FNPND    G GE+SS+AV     +T P++FSCNYCRRKFFSSQALGGHQNAHKRE
Sbjct: 61  LTLCFNPNDTKLKGMGESSSDAVAQAPVATAPKVFSCNYCRRKFFSSQALGGHQNAHKRE 120

Query: 121 RTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTF 180
           RT+AKRAMRMGMF++RYTSL+SLPLHGSA+RSLGI+AH+++H +++P +RP   R G  F
Sbjct: 121 RTLAKRAMRMGMFADRYTSLSSLPLHGSAFRSLGIEAHSSLHQRMVPLERP-DTRGGARF 180

Query: 181 DEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKM--SC 240
           ++GY G+P F+EDE+   FWPGSFR++ ER  GS   E++Q P+  +   MAPP    S 
Sbjct: 181 EQGYYGLPVFIEDEEAELFWPGSFRQIGERVGGSAIPELAQGPN-INFVPMAPPPTTDSS 240

Query: 241 SPDLTLRL 246
           SPDLTL+L
Sbjct: 241 SPDLTLKL 246

BLAST of Cp4.1LG01g06500.1 vs. NCBI nr
Match: gi|224099591|ref|XP_002311543.1| (hypothetical protein POPTR_0008s13730g [Populus trichocarpa])

HSP 1 Score: 274.2 bits (700), Expect = 2.1e-70
Identity = 144/247 (58.30%), Postives = 187/247 (75.71%), Query Frame = 1

Query: 1   MQSPKLNLEWEEDSEVSTQVASDMAVPEATSNPSKDSSS-TSCLTNSIKGNTNQGLVSVD 60
           M SPK   ++E D EVS+QVAS+++V E + +PSKDS++ +S LT+ +K   N   VS+D
Sbjct: 1   MISPKSKSDFENDLEVSSQVASNISVHELSPDPSKDSTTPSSYLTDLVKHQENSVPVSLD 60

Query: 61  LTLHFNPNDVDANGSGETSSEAVGHVSGSTNPRMFSCNYCRRKFFSSQALGGHQNAHKRE 120
           L+LHFN ++++  G+GETS E   H   +T PR+FSCNYCRRKF+SSQALGGHQNAHKRE
Sbjct: 61  LSLHFNSSEIELKGTGETSIEVAAHTPATTIPRVFSCNYCRRKFYSSQALGGHQNAHKRE 120

Query: 121 RTMAKRAMRMGMFSNRYTSLASLPLHGSAYRSLGIQAHAAVHHKILPAQRPFIARNGVTF 180
           RTMAKRAMRMGMFS+RYT+LASLPL+GSA+RSLGI+AHAA+H  I+ +Q P + R G  F
Sbjct: 121 RTMAKRAMRMGMFSDRYTNLASLPLNGSAFRSLGIKAHAAMHQSIIQSQTPPVTRGGARF 180

Query: 181 DEGYIGMPFFMEDEDVAPFWPGSFRRVNERSTGSMPGEVSQVPSPKSGTSMAPPKM-SCS 240
           ++GY GMP FMED+DV P+WPGSFRRV E   G+   E++Q P+        PP+  S +
Sbjct: 181 EQGYYGMPMFMEDDDVGPYWPGSFRRVGEAVGGNSGLELAQSPNMNFEARAPPPRTDSSA 240

Query: 241 PDLTLRL 246
           PDLTL+L
Sbjct: 241 PDLTLKL 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ZFP4_ARATH1.4e-2938.58Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2[more]
ZFP7_ARATH1.2e-2541.45Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1[more]
ZFP1_ARATH7.2e-1850.46Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1[more]
ZFP3_ARATH3.6e-1742.61Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1[more]
ZFP2_ARATH2.7e-1246.07Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KMD6_CUCSA1.1e-8670.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G255670 PE=4 SV=1[more]
F6HFB1_VITVI3.5e-7260.08Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g06200 PE=4 SV=... [more]
B9HJJ4_POPTR1.5e-7058.30Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s13730g PE=4 SV=1[more]
A0A061E8M6_THECC7.4e-7059.36Zinc finger protein 4 OS=Theobroma cacao GN=TCM_011244 PE=4 SV=1[more]
V4UB17_9ROSI4.8e-6959.68Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016402mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G66140.17.9e-3138.58 zinc finger protein 4[more]
AT1G24625.16.9e-2741.45 zinc finger protein 7[more]
AT1G80730.14.1e-1950.46 zinc-finger protein 1[more]
AT5G25160.12.0e-1842.61 zinc finger protein 3[more]
AT5G10970.11.0e-1440.49 C2H2 and C2HC zinc fingers superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659114013|ref|XP_008456866.1|1.5e-8769.80PREDICTED: zinc finger protein 4-like isoform X1 [Cucumis melo][more]
gi|659114015|ref|XP_008456867.1|1.5e-8769.80PREDICTED: zinc finger protein 4-like isoform X2 [Cucumis melo][more]
gi|449445314|ref|XP_004140418.1|1.6e-8670.33PREDICTED: zinc finger protein 4-like [Cucumis sativus][more]
gi|225424442|ref|XP_002285121.1|5.1e-7260.08PREDICTED: zinc finger protein 4-like [Vitis vinifera][more]
gi|224099591|ref|XP_002311543.1|2.1e-7058.30hypothetical protein POPTR_0008s13730g [Populus trichocarpa][more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR007087Zinc finger, C2H2
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g06500Cp4.1LG01g06500gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g06500.1:cds:001Cp4.1LG01g06500.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g06500.1Cp4.1LG01g06500.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 96..116
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 94..121
score: 11
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 78..120
score: 8.
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 89..122
score: 9.9