Cp4.1LG01g05650.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGGTCTTGCGTGAGTGTTAAGAATTTTTCAGTCCAATTTATCAAACCATTTCATTACCTTAGATTCGCCATTGTTTAAGGCAGCAAAAAATGGGGAACGTTCTCAGGTTCCTCTGCGGTCACTTCTGCAATCCTAACGCTGCCGCCGACGCCGATTCCCTCGGTCCTCATGGCGTCTCGCCGGCCACCGTCGGCGTCTCGGCTCTGGCTCACGATCTCTTTGATTTCGAGATCACCTCGCAGGTATGTTCTCAATCTGAAGCTCATCTCGAGCTGCATTTCTGGTTGATTGAATTTTGAATCGGATTCTGTCTGGTGATCTAGTGAAGTTTGTTGTTCACACGATCTATGCTTTGGTATTGATGATTTTGATTTGATGAATTTTTGAAAGGTTCCTCAAGGACTTAGTAAGCATGTGGTTTCGTCGAAGAAGGCACAGGCGAATTGGTAAAGTATTTCTGATTGTTTGGTTACAGAGTGGAGATTTGTGAAAGTAATTGTAGTTACAGAGTGGAGAGATTCTGATTGTTTGTGATGATCTGTGTGTGTGTGTGAAGGTATAGAAAACTGGCTGAAGCTTGGAGGTCGGAGAAACCACCTCCTAAAACGCCTGAAGAAGCATCCAGGCTTGTGATTCAGACACTCAAGAGACACCAGAAGAAAGATGTCGAGGTACAAATAGGAATTCTCTTGCTTGTTATGTTGGATTGGTAAACTGGGAATCTCTGCAGGTTAAATAGTTCAATTGATAAGAGTCAAAGTTCATTCTGTCAAATATGAGCAGCTCTGATGATAATAAGGAAATGCGTTGTTCTTTCCATTTCGAATTCAAATTTTTAGGAGAGAGAAATCAGATCCATGGGGACTTAGCTAGATGGCTTGTGTAGAACAGTCCAAAATCCAGTGGGGTTGGATCTGATGAACTGAAATGGAAAACAGATTACTTTTTGAAAAGTGTCAAATTACTTTTTGAAAATAGTGCTTTCAAGAACGTTTATGTTTTTAAAAAATACTTAAATGCTTCCTTTAAAAGCATTTAAGTACTTTCTTTTCATTTTTAAAACTTCTTAACCACTTTTGTTCTTGGAAAATCAAGCTATAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAANTTAAAAGGAATGTCAAACACACTCAATCAAGTTCTTTGTTTTTATTTCTGTTGTTCAACAGGGATTATTGGCTTTCTATGGTCTACCTCTTCCTCATACTCTTGTCGAACTTTCTGCTCCGGCCCCAGTGCCTACATCGCTACCAGATGGAGTCAAGTTTGAGCTGCAGACATTGCCAGTAAGTGAGAAAGGATGCTTTTATGGGAAATGACCAACCATTTTGTTGATAACAGGTGTGTTCTCATTTCTAAATGTTGAATTCATACCAGGTTGATGCAAAAGCTGTAGCAGATGGTGATACAGTGACAGTGTATGTGAGTACAGCACACCCTCGAGAGTCCTCTTGTATTCCAATGGAGGTTAGGAACGCAGCCATTCAAAGATCACAAGCTAGAAACGCCAAGAACTACGCGAAGGCTGATGCACTTCACAAGACAATAACTGATGCTGGTTACAGGTAAATTATATCTCTTCTCTACTGCATACATACACTTGGACTTTTTCAATAAGTTATTGGGATTTGATGCCTGTTTCTTCTCCCTCAAAAGGGTGCTTACTGTTCAGAATGAGGAGATTCTTGCAAGAAAATACAGGATTCGTCTCAGGTAATTAAAATTAGCACCGTGTGATTTGATTCTTGAACTTTCAGTTTTTTTGTTTTTCATTTTGATGTATACTTTGTTTTTCATTTTGATGTATAATTTTTCAAATCGTTTGTCTATTTTGATTCATGTAATTTCAAAATGTCTACTTTAATTTTTGTACTATTAAAAAGTTCACTGATTTATATTTTCTCTTTTTTTTTTCATTGCAATTTCACAGCAACATCATTCCGAATTTACTAAAAGATACTCTCGTAACTTTTATTAAATGATGATCATTGTGCATAGAATCATTTTGCAAATAGACTAAAGATTCATTTTTCAAGAGCACTAAATCGAAATACGATTTTAACCTGAATAAAAATAGTGATTGTTCCACACTTCAACGATTTCCAGACTCCATTGACCCTTAGGCTTAGTTGAATTTTGATAATGCAGAGGAATAGATGCACCAGAAAGCGCAATGCCTTATGGGAAAGAGGCAAAAGAAGAGCTGAGAAAGCTTGTTGAAGGCAAGTGTTTGAGAGTACTTGTGTACGGAGAAGATCGGTATAACCGATGTGTGGGTGACCTGTATTGTAATGGAAAATTTATTCAGGTAACACTAATTACACTATTTCAACTTTCCACGATGGATCATATGGCTTCATGTTTCTGGTTATGTAAGAATAAGTTTTTGGTTCTCTCTACAGGAAGCAATGCTGAAAAAGGGCTTTGCGTGGCATTACACTGCCTATGACAAACGAGCAGAGCTGGCAAAGGTGCGTTACATTTTGATTTCATTCGTTAAACTTATATCCCATAAACTTCAAGTAACACTTTTGACCCTTGAGATTTAAATTTAACTTCTGTTTGGTCCCTAAAGTTTGAACTAGATTTGTAATTAGTTCTGAAATTTGAAATGCTAACGTGATAGTTAAATATACTTAACTTGCCTTTGCCTTTGATATATGTATGTTTTAAATGAATTAAATATATATTATGTTTTATAAACGTACCAATTATAAATCAATTTCACATCCACCTCAACATTTTGGAAAAAAGAACTACAATTCAGACAGATATTGTCACATTCAAGTTTACAAACAGTTTTAACAGAGGGGAAGTGTTACGTGTATGCTACTTTACATGATCACTTTACTCAATTCTAAATTTCTAATGGATTCTAATTCATGATTCATAACAGTGGGAGAATGAAGCTCGAGCTAAAAGGATAGGGTTGTGGGCTTCTAGAAACCCAGAGCAGCCATGGGAATGGAGAAAGGGAAAGCGTGAAGGGAAATAGTAGCCGCACCGGCTGCCCTGCTACAATACAAAGCCTTTAATTTATACACAATTTATTTCAAGTCTCTACCAAGAAGAAGAGGAAGGGGACCCAAAACCAACCCGAACAAGGTTTCTTCTGTCTTTAGTATTTATCAACATCTTCAACATTGCTTGTAAATTTGTAACAGAAAATTTGACAAGAAATAGATTATTGTTATACTTTGTAAGACCATATCATTCACTTTTAAAGTTTAATCAGCCAGTACAGCATGAGCATGAGGGAAGGTAAATAGATAACCATAAGCTTTACATGCTCATACAGAGAAAAGACACCCCATTTTGACTGTGAACTTGGCAGTGAACGGATTACTAACTGCAAAAATGAATGACATAAATTAGGAAACAATATGAAATATGAAAAAACTGATTTATAGCTTATCCCAAATTACAATTATGTTATTACACATAACTATCTTCTGAAGAATCTCCTAATTAGAGTAGAAATGGTCTCCCTTTGCAGCCTTAAGATAATTTGCTAGCAATTTTCTTATAGAAAAAAAACACGGGGCTCGGGCACCGTACCGTAGTTACTAATATCAGCTCCAACAAATACTTGTCCAAGTAAGCCTGTTAATACACGTATACAAAGATACTCGTCTATCTTATAAACTA AAGGTCTTGCGTGAGTGTTAAGAATTTTTCAGTCCAATTTATCAAACCATTTCATTACCTTAGATTCGCCATTGTTTAAGGCAGCAAAAAATGGGGAACGTTCTCAGGTTCCTCTGCGGTCACTTCTGCAATCCTAACGCTGCCGCCGACGCCGATTCCCTCGGTCCTCATGGCGTCTCGCCGGCCACCGTCGGCGTCTCGGCTCTGGCTCACGATCTCTTTGATTTCGAGATCACCTCGCAGGTTCCTCAAGGACTTAGTAAGCATGTGGTTTCGTCGAAGAAGGCACAGGCGAATTGGTATAGAAAACTGGCTGAAGCTTGGAGGTCGGAGAAACCACCTCCTAAAACGCCTGAAGAAGCATCCAGGCTTGTGATTCAGACACTCAAGAGACACCAGAAGAAAGATGTCGAGGGATTATTGGCTTTCTATGGTCTACCTCTTCCTCATACTCTTGTCGAACTTTCTGCTCCGGCCCCAGTGCCTACATCGCTACCAGATGGAGTCAAGTTTGAGCTGCAGACATTGCCAGTTGATGCAAAAGCTGTAGCAGATGGTGATACAGTGACAGTGTATGTGAGTACAGCACACCCTCGAGAGTCCTCTTGTATTCCAATGGAGGTTAGGAACGCAGCCATTCAAAGATCACAAGCTAGAAACGCCAAGAACTACGCGAAGGCTGATGCACTTCACAAGACAATAACTGATGCTGGTTACAGGGTGCTTACTGTTCAGAATGAGGAGATTCTTGCAAGAAAATACAGGATTCGTCTCAGAGGAATAGATGCACCAGAAAGCGCAATGCCTTATGGGAAAGAGGCAAAAGAAGAGCTGAGAAAGCTTGTTGAAGGCAAGTGTTTGAGAGTACTTGTGTACGGAGAAGATCGGTATAACCGATGTGTGGGTGACCTGTATTGTAATGGAAAATTTATTCAGTGGGAGAATGAAGCTCGAGCTAAAAGGATAGGGTTGTGGGCTTCTAGAAACCCAGAGCAGCCATGGGAATGGAGAAAGGGAAAGCGTGAAGGGAAATAGTAGCCGCACCGGCTGCCCTGCTACAATACAAAGCCTTTAATTTATACACAATTTATTTCAAGTCTCTACCAAGAAGAAGAGGAAGGGGACCCAAAACCAACCCGAACAAGGTTTCTTCTGTCTTTAGTATTTATCAACATCTTCAACATTGCTTGTAAATTTGTAACAGAAAATTTGACAAGAAATAGATTATTGTTATACTTTGTAAGACCATATCATTCACTTTTAAAGTTTAATCAGCCAGTACAGCATGAGCATGAGGGAAGGTAAATAGATAACCATAAGCTTTACATGCTCATACAGAGAAAAGACACCCCATTTTGACTGTGAACTTGGCAGTGAACGGATTACTAACTGCAAAAATGAATGACATAAATTAGGAAACAATATGAAATATGAAAAAACTGATTTATAGCTTATCCCAAATTACAATTATGTTATTACACATAACTATCTTCTGAAGAATCTCCTAATTAGAGTAGAAATGGTCTCCCTTTGCAGCCTTAAGATAATTTGCTAGCAATTTTCTTATAGAAAAAAAACACGGGGCTCGGGCACCGTACCGTAGTTACTAATATCAGCTCCAACAAATACTTGTCCAAGTAAGCCTGTTAATACACGTATACAAAGATACTCGTCTATCTTATAAACTA ATGGGGAACGTTCTCAGGTTCCTCTGCGGTCACTTCTGCAATCCTAACGCTGCCGCCGACGCCGATTCCCTCGGTCCTCATGGCGTCTCGCCGGCCACCGTCGGCGTCTCGGCTCTGGCTCACGATCTCTTTGATTTCGAGATCACCTCGCAGGTTCCTCAAGGACTTAGTAAGCATGTGGTTTCGTCGAAGAAGGCACAGGCGAATTGGTATAGAAAACTGGCTGAAGCTTGGAGGTCGGAGAAACCACCTCCTAAAACGCCTGAAGAAGCATCCAGGCTTGTGATTCAGACACTCAAGAGACACCAGAAGAAAGATGTCGAGGGATTATTGGCTTTCTATGGTCTACCTCTTCCTCATACTCTTGTCGAACTTTCTGCTCCGGCCCCAGTGCCTACATCGCTACCAGATGGAGTCAAGTTTGAGCTGCAGACATTGCCAGTTGATGCAAAAGCTGTAGCAGATGGTGATACAGTGACAGTGTATGTGAGTACAGCACACCCTCGAGAGTCCTCTTGTATTCCAATGGAGGTTAGGAACGCAGCCATTCAAAGATCACAAGCTAGAAACGCCAAGAACTACGCGAAGGCTGATGCACTTCACAAGACAATAACTGATGCTGGTTACAGGGTGCTTACTGTTCAGAATGAGGAGATTCTTGCAAGAAAATACAGGATTCGTCTCAGAGGAATAGATGCACCAGAAAGCGCAATGCCTTATGGGAAAGAGGCAAAAGAAGAGCTGAGAAAGCTTGTTGAAGGCAAGTGTTTGAGAGTACTTGTGTACGGAGAAGATCGGTATAACCGATGTGTGGGTGACCTGTATTGTAATGGAAAATTTATTCAGTGGGAGAATGAAGCTCGAGCTAAAAGGATAGGGTTGTGGGCTTCTAGAAACCCAGAGCAGCCATGGGAATGGAGAAAGGGAAAGCGTGAAGGGAAATAG MGNVLRFLCGHFCNPNAAADADSLGPHGVSPATVGVSALAHDLFDFEITSQVPQGLSKHVVSSKKAQANWYRKLAEAWRSEKPPPKTPEEASRLVIQTLKRHQKKDVEGLLAFYGLPLPHTLVELSAPAPVPTSLPDGVKFELQTLPVDAKAVADGDTVTVYVSTAHPRESSCIPMEVRNAAIQRSQARNAKNYAKADALHKTITDAGYRVLTVQNEEILARKYRIRLRGIDAPESAMPYGKEAKEELRKLVEGKCLRVLVYGEDRYNRCVGDLYCNGKFIQWENEARAKRIGLWASRNPEQPWEWRKGKREGK
BLAST of Cp4.1LG01g05650.1 vs. Swiss-Prot
Match: CAN2_ARATH (Staphylococcal-like nuclease CAN2 OS=Arabidopsis thaliana GN=CAN2 PE=1 SV=1) HSP 1 Score: 427.2 bits (1097), Expect = 1.6e-118 Identity = 218/334 (65.27%), Postives = 253/334 (75.75%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. Swiss-Prot
Match: Y38K_CAPSE (Uncharacterized 38.1 kDa protein OS=Capnoides sempervirens PE=2 SV=1) HSP 1 Score: 402.5 bits (1033), Expect = 4.2e-111 Identity = 209/338 (61.83%), Postives = 244/338 (72.19%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. Swiss-Prot
Match: CAN1_ARATH (Staphylococcal-like nuclease CAN1 OS=Arabidopsis thaliana GN=CAN1 PE=1 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 5.5e-111 Identity = 207/336 (61.61%), Postives = 244/336 (72.62%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. Swiss-Prot
Match: CAN1_ORYSJ (Probable staphylococcal-like nuclease CAN1 OS=Oryza sativa subsp. japonica GN=Os01g0166100 PE=2 SV=1) HSP 1 Score: 370.2 bits (949), Expect = 2.3e-101 Identity = 192/338 (56.80%), Postives = 232/338 (68.64%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. Swiss-Prot
Match: CAN2_ORYSJ (Probable staphylococcal-like nuclease CAN2 OS=Oryza sativa subsp. japonica GN=Os11g0109500 PE=2 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.8e-85 Identity = 159/323 (49.23%), Postives = 215/323 (66.56%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TrEMBL
Match: B6CAZ6_CUCSA (Calcium-dependent nuclease OS=Cucumis sativus GN=Csa_5G218750 PE=2 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 6.6e-148 Identity = 268/338 (79.29%), Postives = 286/338 (84.62%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TrEMBL
Match: B9S495_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688330 PE=4 SV=1) HSP 1 Score: 495.7 bits (1275), Expect = 4.0e-137 Identity = 249/337 (73.89%), Postives = 276/337 (81.90%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TrEMBL
Match: A1KYZ0_POPTO (Ca(2+)-dependent DNase OS=Populus tomentosa GN=CDD PE=2 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 5.3e-137 Identity = 245/337 (72.70%), Postives = 272/337 (80.71%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TrEMBL
Match: B9HHW7_POPTR (Ca(2+)-dependent nuclease family protein OS=Populus trichocarpa GN=POPTR_0008s07470g PE=4 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 1.2e-136 Identity = 244/337 (72.40%), Postives = 272/337 (80.71%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TrEMBL
Match: A0A061FJY4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_042417 PE=4 SV=1) HSP 1 Score: 489.6 bits (1259), Expect = 2.9e-135 Identity = 247/337 (73.29%), Postives = 270/337 (80.12%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TAIR10
Match: AT2G40410.2 (AT2G40410.2 Staphylococcal nuclease homologue) HSP 1 Score: 427.2 bits (1097), Expect = 8.9e-120 Identity = 218/334 (65.27%), Postives = 253/334 (75.75%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. TAIR10
Match: AT3G56170.1 (AT3G56170.1 Ca-2+ dependent nuclease) HSP 1 Score: 402.1 bits (1032), Expect = 3.1e-112 Identity = 207/336 (61.61%), Postives = 244/336 (72.62%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. NCBI nr
Match: gi|659114095|ref|XP_008456902.1| (PREDICTED: uncharacterized 38.1 kDa protein [Cucumis melo]) HSP 1 Score: 540.4 bits (1391), Expect = 2.1e-150 Identity = 270/338 (79.88%), Postives = 292/338 (86.39%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. NCBI nr
Match: gi|568384727|ref|NP_001275526.1| (uncharacterized protein LOC101213685 [Cucumis sativus]) HSP 1 Score: 531.6 bits (1368), Expect = 9.5e-148 Identity = 268/338 (79.29%), Postives = 286/338 (84.62%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. NCBI nr
Match: gi|255559589|ref|XP_002520814.1| (PREDICTED: staphylococcal-like nuclease CAN2 [Ricinus communis]) HSP 1 Score: 495.7 bits (1275), Expect = 5.8e-137 Identity = 249/337 (73.89%), Postives = 276/337 (81.90%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. NCBI nr
Match: gi|60476854|gb|AAX21543.1| (Ca(2+)-dependent DNase [Populus tomentosa]) HSP 1 Score: 495.4 bits (1274), Expect = 7.6e-137 Identity = 245/337 (72.70%), Postives = 272/337 (80.71%), Query Frame = 1
BLAST of Cp4.1LG01g05650.1 vs. NCBI nr
Match: gi|224098748|ref|XP_002311254.1| (Ca(2+)-dependent nuclease family protein [Populus trichocarpa]) HSP 1 Score: 494.2 bits (1271), Expect = 1.7e-136 Identity = 244/337 (72.40%), Postives = 272/337 (80.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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