Cp4.1LG01g00160.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAAATGATGTTTTTTTAAAACAATTTTAAAATTCTAAGTATCTTTTAAAAATAAAATTTGAATTATAATGGTATAAAAAAAATTTATTTAGATTTTAAGTATAATTTTTTTTTTATAACCTTAATGGTTAAAATTTGATGATAAAAAATGCTGGGGAACATAAGAGTTAAAAACTATTTTTCAATAAAAAAAAAGAATAAAAAAAGCTAGAGAGAGAAATGAGGAGCCTACCTAGTGAACAACAAGAGTCATCGTTTTCATGGAGATCGAAGTTCCGTCCGATTATGGGTCTTGAGACTCTATAAATATCTGCTTCCTCACCCGGCTATAATCCTCCAATAAATTCGAAAAGAAATCAACCATCAGCAACGCAAGGAATCAATTAAGGATGCTCTTCTTCAAATCTTCTTCCGGAGCAGTACACCAGGAATCTCAGCCGCAGGAGGAGGTCAAGAGATGTGGCGGAGGCGGAGACGGCGGCGCGTGTATCTCACTGACCGTGTGGAGGAAGTCACTGCTACTCACTTGCAACGGATTCACAGTCATCGATCGTAGCGGAAACATCGTATACCGAGTCGACAATTACATTGGACGCCCGGAGGAAGTGATTCTAATGGACGGCCTCGGCAAATCCGTCCTCACAATGTGCCGCTCCAAGGTCAGTCAAATTTTACTCTCACGCATACGTTTGATTCTTCGTCTTTCCGATGAAATTGAACTTAATGTTTATGAATCGCTCTGATTTTCTCTGTGATTCCGGCTGGATTGGATTTTAATTTGTGTTTGTTTTGGTTAAACAGAAACTCGGAATAGCAGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGCAAAATTAGGGCTAGAAAGAATCCGATATGTCGAGTGAGGAAGAACATGAACATACTACATGTCGCTCCGAATTCGAAAGTGCTTGCGTACGTATACGATTACAGAATCTCAGACAAAAAGTATGCGTACAGTATAGAAGGTTCGTACGGGCAGAGATCGTGCAAGATTTTGGACGCGTCGAGGAGAGTGGTGGCGGAGGTGAGGAGGAAGGAGCCGATTAACGGCGGCGTATGTTTTGGGGCGGAGGTTTTTCTTCTGCTGGTTCTTCCTGGTTTTGATTCGGGATTGGCTATGGCTCTGGTTTTACTTTTGGATCAGATGTTCTCTTAGAATTTGATTCTTCTTCGTCGTGTTCATCTCCATCTGTGGTTGTACATATTTTGCAGAAGCTGCGTTTTCATTTTGAAAGGGATTTGTTTCCTTTTTGAGTAAGGAGTGTACAATATTGCTTTGTTGTAGGAATAATTGAATTTCCTTTCGCCTATTTCATTTTCAATCCCAATTTTGGACTCTTATGATCATCCTTTTAAACAAGTAATTCAG GTAAATGATGTTTTTTTAAAACAATTTTAAAATTCTAAGTATCTTTTAAAAATAAAATTTGAATTATAATGGTATAAAAAAAATTTATTTAGATTTTAAGTATAATTTTTTTTTTATAACCTTAATGGTTAAAATTTGATGATAAAAAATGCTGGGGAACATAAGAGTTAAAAACTATTTTTCAATAAAAAAAAAGAATAAAAAAAGCTAGAGAGAGAAATGAGGAGCCTACCTAGTGAACAACAAGAGTCATCGTTTTCATGGAGATCGAAGTTCCGTCCGATTATGGGTCTTGAGACTCTATAAATATCTGCTTCCTCACCCGGCTATAATCCTCCAATAAATTCGAAAAGAAATCAACCATCAGCAACGCAAGGAATCAATTAAGGATGCTCTTCTTCAAATCTTCTTCCGGAGCAGTACACCAGGAATCTCAGCCGCAGGAGGAGGTCAAGAGATGTGGCGGAGGCGGAGACGGCGGCGCGTGTATCTCACTGACCGTGTGGAGGAAGTCACTGCTACTCACTTGCAACGGATTCACAGTCATCGATCGTAGCGGAAACATCGTATACCGAGTCGACAATTACATTGGACGCCCGGAGGAAGTGATTCTAATGGACGGCCTCGGCAAATCCGTCCTCACAATGTGCCGCTCCAAGAAACTCGGAATAGCAGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGCAAAATTAGGGCTAGAAAGAATCCGATATGTCGAGTGAGGAAGAACATGAACATACTACATGTCGCTCCGAATTCGAAAGTGCTTGCGTACGTATACGATTACAGAATCTCAGACAAAAAGTATGCGTACAGTATAGAAGGTTCGTACGGGCAGAGATCGTGCAAGATTTTGGACGCGTCGAGGAGAGTGGTGGCGGAGGTGAGGAGGAAGGAGCCGATTAACGGCGGCGTATGTTTTGGGGCGGAGGTTTTTCTTCTGCTGGTTCTTCCTGGTTTTGATTCGGGATTGGCTATGGCTCTGGTTTTACTTTTGGATCAGATGTTCTCTTAGAATTTGATTCTTCTTCGTCGTGTTCATCTCCATCTGTGGTTGTACATATTTTGCAGAAGCTGCGTTTTCATTTTGAAAGGGATTTGTTTCCTTTTTGAGTAAGGAGTGTACAATATTGCTTTGTTGTAGGAATAATTGAATTTCCTTTCGCCTATTTCATTTTCAATCCCAATTTTGGACTCTTATGATCATCCTTTTAAACAAGTAATTCAG ATGCTCTTCTTCAAATCTTCTTCCGGAGCAGTACACCAGGAATCTCAGCCGCAGGAGGAGGTCAAGAGATGTGGCGGAGGCGGAGACGGCGGCGCGTGTATCTCACTGACCGTGTGGAGGAAGTCACTGCTACTCACTTGCAACGGATTCACAGTCATCGATCGTAGCGGAAACATCGTATACCGAGTCGACAATTACATTGGACGCCCGGAGGAAGTGATTCTAATGGACGGCCTCGGCAAATCCGTCCTCACAATGTGCCGCTCCAAGAAACTCGGAATAGCAGAGAACTGGTGCGTGTACGAAGGGGAAGTAGGAGGCAAAATTAGGGCTAGAAAGAATCCGATATGTCGAGTGAGGAAGAACATGAACATACTACATGTCGCTCCGAATTCGAAAGTGCTTGCGTACGTATACGATTACAGAATCTCAGACAAAAAGTATGCGTACAGTATAGAAGGTTCGTACGGGCAGAGATCGTGCAAGATTTTGGACGCGTCGAGGAGAGTGGTGGCGGAGGTGAGGAGGAAGGAGCCGATTAACGGCGGCGTATGTTTTGGGGCGGAGGTTTTTCTTCTGCTGGTTCTTCCTGGTTTTGATTCGGGATTGGCTATGGCTCTGGTTTTACTTTTGGATCAGATGTTCTCTTAG MLFFKSSSGAVHQESQPQEEVKRCGGGGDGGACISLTVWRKSLLLTCNGFTVIDRSGNIVYRVDNYIGRPEEVILMDGLGKSVLTMCRSKKLGIAENWCVYEGEVGGKIRARKNPICRVRKNMNILHVAPNSKVLAYVYDYRISDKKYAYSIEGSYGQRSCKILDASRRVVAEVRRKEPINGGVCFGAEVFLLLVLPGFDSGLAMALVLLLDQMFS
BLAST of Cp4.1LG01g00160.1 vs. Swiss-Prot
Match: LOR17_ARATH (Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2) HSP 1 Score: 193.0 bits (489), Expect = 3.5e-48 Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. Swiss-Prot
Match: LOR8_ARATH (Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 2.3e-36 Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. Swiss-Prot
Match: LOR5_ARATH (Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=2 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 3.2e-25 Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. Swiss-Prot
Match: LOR12_ARATH (Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20 Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. Swiss-Prot
Match: LOR11_ARATH (Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14 Identity = 64/184 (34.78%), Postives = 89/184 (48.37%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TrEMBL
Match: A0A0A0KWV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050160 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 4.6e-92 Identity = 175/219 (79.91%), Postives = 194/219 (88.58%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TrEMBL
Match: D7TV75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00500 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66 Identity = 141/223 (63.23%), Postives = 162/223 (72.65%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TrEMBL
Match: A0A061G4S4_THECC (UPF0706 protein, putative OS=Theobroma cacao GN=TCM_016348 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 6.5e-62 Identity = 132/218 (60.55%), Postives = 155/218 (71.10%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TrEMBL
Match: A0A0D2QHG8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G085200 PE=4 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.6e-60 Identity = 125/219 (57.08%), Postives = 160/219 (73.06%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TrEMBL
Match: A0A151R561_CAJCA (UPF0706 protein At5g01750 family OS=Cajanus cajan GN=KK1_041177 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 3.6e-60 Identity = 130/217 (59.91%), Postives = 160/217 (73.73%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TAIR10
Match: AT5G41590.1 (AT5G41590.1 Protein of unknown function (DUF567)) HSP 1 Score: 193.0 bits (489), Expect = 1.9e-49 Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TAIR10
Match: AT2G38640.1 (AT2G38640.1 Protein of unknown function (DUF567)) HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37 Identity = 87/190 (45.79%), Postives = 122/190 (64.21%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TAIR10
Match: AT1G80120.1 (AT1G80120.1 Protein of unknown function (DUF567)) HSP 1 Score: 116.7 bits (291), Expect = 1.8e-26 Identity = 78/186 (41.94%), Postives = 111/186 (59.68%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TAIR10
Match: AT3G15810.1 (AT3G15810.1 Protein of unknown function (DUF567)) HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21 Identity = 67/182 (36.81%), Postives = 100/182 (54.95%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. TAIR10
Match: AT1G53880.1 (AT1G53880.1 Eukaryotic translation initiation factor 2B (eIF-2B) family protein) HSP 1 Score: 82.4 bits (202), Expect = 3.7e-16 Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. NCBI nr
Match: gi|659102191|ref|XP_008451999.1| (PREDICTED: protein LURP-one-related 17 [Cucumis melo]) HSP 1 Score: 349.4 bits (895), Expect = 4.6e-93 Identity = 177/218 (81.19%), Postives = 194/218 (88.99%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. NCBI nr
Match: gi|449457598|ref|XP_004146535.1| (PREDICTED: protein LURP-one-related 17 [Cucumis sativus]) HSP 1 Score: 345.5 bits (885), Expect = 6.7e-92 Identity = 175/219 (79.91%), Postives = 194/219 (88.58%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. NCBI nr
Match: gi|225426130|ref|XP_002272759.1| (PREDICTED: protein LURP-one-related 17 [Vitis vinifera]) HSP 1 Score: 258.8 bits (660), Expect = 8.2e-66 Identity = 141/223 (63.23%), Postives = 162/223 (72.65%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. NCBI nr
Match: gi|590678662|ref|XP_007040364.1| (UPF0706 protein, putative [Theobroma cacao]) HSP 1 Score: 245.4 bits (625), Expect = 9.4e-62 Identity = 132/218 (60.55%), Postives = 155/218 (71.10%), Query Frame = 1
BLAST of Cp4.1LG01g00160.1 vs. NCBI nr
Match: gi|1009156867|ref|XP_015896463.1| (PREDICTED: protein LURP-one-related 17-like [Ziziphus jujuba]) HSP 1 Score: 241.9 bits (616), Expect = 1.0e-60 Identity = 129/211 (61.14%), Postives = 159/211 (75.36%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
|