Cp4.1LG00g02970.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02970.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Hydroxyproline-rich glycoprotein
Location	Cp4.1LG00 : 9794039 .. 9794461 (+)
Sequence length	423

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGGCCTTGATCCTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCACCAACCGGCACCGGCTATCCCGCCACTCCGGCCACTCTAACTCCACCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCTCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

mRNA sequence

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGGCCTTGATCCTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCACCAACCGGCACCGGCTATCCCGCCACTCCGGCCACTCTAACTCCACCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCTCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

Coding sequence (CDS)

ATGGGTTCACACCTAAACAAGGTTCTCTCCACAATCCTCCTGGCCTTGATCCTTTCCGTCCTTCCGCCGGCGACTAGCTCCGACGACACCTGCCCATATCCCTGCTACCCTCCACCAACCGGCACCGGCTATCCCGCCACTCCGGCCACTCTAACTCCACCGTCGCAAACAGACTCAGGCTCCTACTCTCCTCCAGCGTACTACTCTCCGCCGGCTGCATATTACCCATATAACCCGCCGCCGTACGATGGCGACAGCTTCGACGGCATCACTCCACCGCCACCGGATCCGATTCTGCCGTACTTCCCTTACTATTACAAGAAGCCTCCTCACAAACCGGAGGATGAATCCGGTGGTACCGCCGTGTCGGAGATCGGAGCTTTTGTATTTATTTGTGTCTCCGTCTTATTGAATTTGATGTAA

Protein sequence

MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDESGGTAVSEIGAFVFICVSVLLNLM

Homology

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL
Match: A0A0A0KUZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576580 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.6e-46
Identity = 96/135 (71.11%), Postives = 111/135 (82.22%), Query Frame = 1


Query: 9   LSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSPPAYY 68
           +  +LLAL++++ PPAT SDDTCPYPCYPPPTG+G   TPATL+PPSQT   SYSPPAYY
Sbjct: 9   IPAVLLALVIALFPPATRSDDTCPYPCYPPPTGSG-TTTPATLSPPSQTGYSSYSPPAYY 68

Query: 69  SPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDESGGTAV----SE 128
           SPPAAYYPYNPP  DG+SFDG+TPPPPDPILPYFPYYYKKPPHKP+DESGG+AV    SE
Sbjct: 69  SPPAAYYPYNPPTSDGNSFDGVTPPPPDPILPYFPYYYKKPPHKPDDESGGSAVAGRKSE 128

Query: 129 IGAFVFICVSVLLNL 140
           +G      V + L+L
Sbjct: 129 VGLLAGTFVLIALSL 142

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL
Match: A0A059D6I9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02901 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-23
Identity = 62/117 (52.99%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG 60
           M +   K++ST+ L  + S L     SD+ C YPCYPPPTGTG P TP T TPPSQT + 
Sbjct: 58  MATKAAKLVSTLFLVSVFSQLAGRARSDEPCAYPCYPPPTGTGTPVTPVTTTPPSQTGN- 117

Query: 61  SYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDES 118
             SPP+Y+ PP  Y P+ PPP  G  F    PPPPDPILPYFP+YY+KP H+ E  +
Sbjct: 118 --SPPSYFPPPGGYLPFVPPPPYGGGF--YVPPPPDPILPYFPFYYRKPLHQTESSA 169

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL
Match: B9HJA6_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s12810g PE=4 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-22
Identity = 74/144 (51.39%), Postives = 89/144 (61.81%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLT----PPSQ 60
           M  +L   LS +    +LS LP   +SDD CPYPCYPPPTGTG   TP  LT    PPSQ
Sbjct: 1   MDINLTLTLSILFFTSVLSNLPSLATSDDVCPYPCYPPPTGTG--RTPTVLTTPPSPPSQ 60

Query: 61  TDSGSYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDE 120
           + +GSYSPP Y S P    P+ PPP  G++ DG+  PPPDPILPYFP+YY+KPPH+  D 
Sbjct: 61  S-AGSYSPPGYPS-PTGNLPFYPPPPFGNNLDGL--PPPDPILPYFPFYYRKPPHQ-TDA 120

Query: 121 SGGT---------AVSEIGAFVFI 132
           S  T         A+S I AF F+
Sbjct: 121 SLATNSLPTLMMAAISNILAFAFL 137

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL
Match: V7CHY2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G093200g PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 69/145 (47.59%), Postives = 84/145 (57.93%), Query Frame = 1


Query: 3   SHLNKVLST--ILLALILSVLPPATSSDDT-CPYPCYPPPTGTGYPATPATLTPPSQTDS 62
           SH N   S+  I L+++L   P  T +D+  CPYPCYPPPTG   P TP++        +
Sbjct: 4   SHPNPATSSTLIFLSMLLLCFPTTTKTDNPPCPYPCYPPPTGIVTPTTPSS-------GA 63

Query: 63  GSYSPPA------YYSPPAAYYPYNP-PPYDG--DSFDG-----ITPPPPDPILPYFPYY 122
           GS  PPA       Y PP   YPY P PPY G  D+  G      TPPPPDPILPYFP+Y
Sbjct: 64  GSTVPPAPPQPGLAYPPPTGTYPYYPTPPYGGGVDNSGGGGGVFATPPPPDPILPYFPFY 123

Query: 123 YKKPPHKPEDESGGTAVSEIGAFVF 131
           Y+KPPHKPED S  T++ +    VF
Sbjct: 124 YRKPPHKPEDNSAPTSLKKRKEMVF 141

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL
Match: V4UGT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017051mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.6e-19
Identity = 66/141 (46.81%), Postives = 82/141 (58.16%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTG-------TGYPATPAT-LT 60
           M   L +   T+    IL      T  D  CPYPCYPPPTG       TG P+ PAT LT
Sbjct: 1   MARKLIQNFPTLFFYSILVNFLVLTMQDQPCPYPCYPPPTGPGSGTPTTGTPSPPATTLT 60

Query: 61  PPSQTDSGSYS----PPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKK 120
           PPS + SGS S    P  YYSPP+   P  P P +G++  G  PPPPDPILPYFPYYY+K
Sbjct: 61  PPSSSGSGSVSSYPPPTGYYSPPSENLPNYPAPPNGNNLYG--PPPPDPILPYFPYYYRK 120

Query: 121 PPHKPEDESGGTAVSEIGAFV 130
           PPH+ +++S  T+  +  A +
Sbjct: 121 PPHQTDNQSSATSTGKSMALI 139

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10
Match: AT1G23050.1 (AT1G23050.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 11  TILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG-SYSPPA--- 70
           T++    L   P    SD  CPYPCYP P   G  +TP+   PP     G +Y  PA   
Sbjct: 12  TLIFVFSLVYFPYLVISDTPCPYPCYPTPPIGGGSSTPSMTQPPPYPPPGVNYPTPAGNL 71

Query: 71  -YYSPPAAYYP-YNPPPYDGDSFDGIT---PPPPDPILPYFPYYYKKPPHKPEDESGGTA 130
             Y PP    P Y  PPY G    G +   PPPP+ ILPYFPYY++KPPH+ +  S  + 
Sbjct: 72  PNYPPPVGNIPNYPSPPYGGGDSSGSSFYGPPPPNAILPYFPYYFRKPPHQTDQTSSSSH 131

Query: 131 VSEIGAFVFICVSV 136
           V+  G +    V+V
Sbjct: 132 VAVPGKWTVRIVAV 145

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10
Match: AT1G70985.1 (AT1G70985.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 68.2 bits (165), Expect = 4.7e-12
Identity = 47/120 (39.17%), Postives = 56/120 (46.67%), Query Frame = 1


Query: 9   LSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSPPAYY 68
           L ++L    L + P  T S   CPYPC P P                   +GS  P  YY
Sbjct: 8   LISLLFVFSLVMFPFITISQTPCPYPCNPLPIA----------------GTGSTQPAGYY 67

Query: 69  SPPAAYYP---------YNPPPYDGDSFDG--ITPPPPDPILPYFPYYYKKPPHKPEDES 118
             P  YYP         Y  PPY G +  G    PPPPDPILPYFP+YY+KPPH+ +  S
Sbjct: 68  PQPTGYYPPPSSSNVPNYPSPPYYGGNPSGGYNGPPPPDPILPYFPFYYRKPPHQTDQSS 111

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10
Match: AT5G49280.1 (AT5G49280.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-11
Identity = 56/156 (35.90%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 9   LSTILLALILSVLPPATSSDD--------TCPYPCYP-----PPTGTGYPATPATLTPPS 68
           LST+++ L++SV P  TS D+        +C  PC P     PP     P+TP T  PP 
Sbjct: 9   LSTLVVMLLVSVTPTVTSKDEVVSCTMCSSCDNPCSPVQSSPPPPSPPPPSTPTTACPPP 68

Query: 69  QTDSGSYSPPAYYSPPAAY------YP----------YNPPPYDGDSFDGITPPPPDPIL 128
            +   S    +YY PP +       YP          Y PPPY G+     TPPPP+PI+
Sbjct: 69  PSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQGYYYPPPYSGNY---PTPPPPNPIV 128

Query: 129 PYFPYYYKKPPHKPEDESGGTAVSEIGAF--VFICV 134
           PYFP+YY  PP     +   ++ S I A   VF+C+
Sbjct: 129 PYFPFYYHTPPPGSGSDRFMSSYSIIFALFAVFLCL 161

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10
Match: AT3G06750.1 (AT3G06750.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 47/119 (39.50%), Postives = 56/119 (47.06%), Query Frame = 1


Query: 13  LLALILSVLPPATSSDDT--------CPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSP 72
           LL L++S+    TS D+T        C  PC P P+    P  P    P S    GSY  
Sbjct: 12  LLILLMSLPLLVTSKDETVSCTMCSSCDNPCNPVPSSYSPPPPP----PSSSGGGGSY-- 71

Query: 73  PAYYSPPAAYYPYN---PPPYDGDSFDGI----------TPPPPDPILPYFPYYYKKPP 111
             YYSPP          PPPY GD + G           TPPPP+PI+PYFP+YY  PP
Sbjct: 72  --YYSPPPPSSSGGVKYPPPYGGDGYGGYYPPPYYGNYGTPPPPNPIVPYFPFYYHTPP 122

[Close]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10
Match: AT4G16140.1 (AT4G16140.1 proline-rich family protein)

HSP 1 Score: 48.5 bits (114), Expect = 3.8e-06
Identity = 42/103 (40.78%), Postives = 51/103 (49.51%), Query Frame = 1


Query: 25  TSSDDTC-PYPCYPPPTGTGYPATPATLT---PPSQTDSGSYSPPAYYSPPAA----YYP 84
           TS D+ C P P  PPP     P  P+  T   PP  + SG    P YY PPA+    Y P
Sbjct: 35  TSCDNPCQPNPSPPPPPSNPSPPPPSPTTTACPPPPSSSGG--GPYYYYPPASQSGSYRP 94

Query: 85  ---------YNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPP 111
                    Y PPP  G ++     PPP+PI+PYFP+YY  PP
Sbjct: 95  PPSSSSGGYYYPPPKSGGNYP--YTPPPNPIVPYFPFYYYNPP 133

[Close]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr
Match: gi|659072902|ref|XP_008467157.1| (PREDICTED: extensin [Cucumis melo])

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-46
Identity = 98/135 (72.59%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 9   LSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSPPAYY 68
           +  +LLAL++++LPPAT SDDTCPYPCYPPPTG G   TPAT +PPSQ    SYSPPAYY
Sbjct: 5   IPAVLLALVIALLPPATRSDDTCPYPCYPPPTGPG-TTTPATPSPPSQPGYSSYSPPAYY 64

Query: 69  SPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDESGGTAV----SE 128
           SPPAAYYPYNPPP DG+SFDG+TPPPPDPILPYFPYYYKKPPHKP+DESGG+AV    SE
Sbjct: 65  SPPAAYYPYNPPPSDGNSFDGVTPPPPDPILPYFPYYYKKPPHKPDDESGGSAVAGRKSE 124

Query: 129 I----GAFVFICVSV 136
           +    G FVFI +S+
Sbjct: 125 VGLIAGTFVFIFLSL 138

[Close]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr
Match: gi|778704056|ref|XP_011655467.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 8.0e-46
Identity = 96/135 (71.11%), Postives = 111/135 (82.22%), Query Frame = 1


Query: 9   LSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSGSYSPPAYY 68
           +  +LLAL++++ PPAT SDDTCPYPCYPPPTG+G   TPATL+PPSQT   SYSPPAYY
Sbjct: 9   IPAVLLALVIALFPPATRSDDTCPYPCYPPPTGSG-TTTPATLSPPSQTGYSSYSPPAYY 68

Query: 69  SPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDESGGTAV----SE 128
           SPPAAYYPYNPP  DG+SFDG+TPPPPDPILPYFPYYYKKPPHKP+DESGG+AV    SE
Sbjct: 69  SPPAAYYPYNPPTSDGNSFDGVTPPPPDPILPYFPYYYKKPPHKPDDESGGSAVAGRKSE 128

Query: 129 IGAFVFICVSVLLNL 140
           +G      V + L+L
Sbjct: 129 VGLLAGTFVLIALSL 142

[Close]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr
Match: gi|629121722|gb|KCW86212.1| (hypothetical protein EUGRSUZ_B02901 [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 62/117 (52.99%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG 60
           M +   K++ST+ L  + S L     SD+ C YPCYPPPTGTG P TP T TPPSQT + 
Sbjct: 58  MATKAAKLVSTLFLVSVFSQLAGRARSDEPCAYPCYPPPTGTGTPVTPVTTTPPSQTGN- 117

Query: 61  SYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDES 118
             SPP+Y+ PP  Y P+ PPP  G  F    PPPPDPILPYFP+YY+KP H+ E  +
Sbjct: 118 --SPPSYFPPPGGYLPFVPPPPYGGGF--YVPPPPDPILPYFPFYYRKPLHQTESSA 169

[Close]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr
Match: gi|702286183|ref|XP_010046541.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 62/117 (52.99%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLTPPSQTDSG 60
           M +   K++ST+ L  + S L     SD+ C YPCYPPPTGTG P TP T TPPSQT + 
Sbjct: 1   MATKAAKLVSTLFLVSVFSQLAGRARSDEPCAYPCYPPPTGTGTPVTPVTTTPPSQTGN- 60

Query: 61  SYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDES 118
             SPP+Y+ PP  Y P+ PPP  G  F    PPPPDPILPYFP+YY+KP H+ E  +
Sbjct: 61  --SPPSYFPPPGGYLPFVPPPPYGGGF--YVPPPPDPILPYFPFYYRKPLHQTESSA 112

[Close]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr
Match: gi|566183664|ref|XP_002311500.2| (hydroxyproline-rich glycoprotein [Populus trichocarpa])

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 74/144 (51.39%), Postives = 89/144 (61.81%), Query Frame = 1


Query: 1   MGSHLNKVLSTILLALILSVLPPATSSDDTCPYPCYPPPTGTGYPATPATLT----PPSQ 60
           M  +L   LS +    +LS LP   +SDD CPYPCYPPPTGTG   TP  LT    PPSQ
Sbjct: 1   MDINLTLTLSILFFTSVLSNLPSLATSDDVCPYPCYPPPTGTG--RTPTVLTTPPSPPSQ 60

Query: 61  TDSGSYSPPAYYSPPAAYYPYNPPPYDGDSFDGITPPPPDPILPYFPYYYKKPPHKPEDE 120
           + +GSYSPP Y S P    P+ PPP  G++ DG+  PPPDPILPYFP+YY+KPPH+  D 
Sbjct: 61  S-AGSYSPPGYPS-PTGNLPFYPPPPFGNNLDGL--PPPDPILPYFPFYYRKPPHQ-TDA 120

Query: 121 SGGT---------AVSEIGAFVFI 132
           S  T         A+S I AF F+
Sbjct: 121 SLATNSLPTLMMAAISNILAFAFL 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g02970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUZ1_CUCSA	5.6e-46	71.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576580 PE=4 SV=1	[more]
A0A059D6I9_EUCGR	3.9e-23	52.99	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02901 PE=4 SV=1	[more]
B9HJA6_POPTR	2.5e-22	51.39	Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s12810g PE=...	[more]
V7CHY2_PHAVU	1.2e-19	47.59	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G093200g PE=4 SV=1	[more]
V4UGT7_9ROSI	2.6e-19	46.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017051mg PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23050.1	2.3e-14	39.55	hydroxyproline-rich glycoprotein family protein	[more]
AT1G70985.1	4.7e-12	39.17	hydroxyproline-rich glycoprotein family protein	[more]
AT5G49280.1	1.8e-11	35.90	hydroxyproline-rich glycoprotein family protein	[more]
AT3G06750.1	2.4e-08	39.50	hydroxyproline-rich glycoprotein family protein	[more]
AT4G16140.1	3.8e-06	40.78	proline-rich family protein	[more]

BLAST of Cp4.1LG00g02970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072902\|ref\|XP_008467157.1\|	6.1e-46	72.59	PREDICTED: extensin [Cucumis melo]	[more]
gi\|778704056\|ref\|XP_011655467.1\|	8.0e-46	71.11	PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]	[more]
gi\|629121722\|gb\|KCW86212.1\|	5.6e-23	52.99	hypothetical protein EUGRSUZ_B02901 [Eucalyptus grandis]	[more]
gi\|702286183\|ref\|XP_010046541.1\|	5.6e-23	52.99	PREDICTED: leucine-rich repeat extensin-like protein 3 [Eucalyptus grandis]	[more]
gi\|566183664\|ref\|XP_002311500.2\|	3.6e-22	51.39	hydroxyproline-rich glycoprotein [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG00g02970	Cp4.1LG00g02970	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_38g00010.1:cds:001	Cp4.1_LG00_38g00010.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG00g02970.1	Cp4.1LG00g02970.1-protein	polypeptide