Cp4.1LG00g02580.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACTCGTTTTGATTTTGGCGAGTTCATGAACCTTCCGAAGAAAATTCATATAAACTTATCAGTAATGGAAGTTTCATAGCATATAAGGTAGGCCTAATTATGTAAATTTTTTTTAAGATGGTTTATCTCTAGACAAGGAATGTCTTAGCCTTCCAAATTCCTCAGCCACACACCAATCAAGCTCCACAGCCACACACCAATCAAGCTCCACAGCCACACAAATGGCCTCCACTCCTTTCCGCCTTGTTGTCTTCACCATCTTTCTTCATCTTCATTTCCCAAAATCTCTGCCCTTCCTCTTTTCTCTTCAATCCTCCACCATATACTTCCTCTTTCTCTATCCCCTTCCTTCCCGATTTTTCTTCTCTTCGATTCTCTCTTGGATTTATCCGGCGGCAGTGTTTTACCGGCACTGCGGTGCTTTGAGTTGCTGCTTTTCCTCCGAATTTCGTGGAGTTGATGATCTCGGAGTAGGAAACGGGAGAAGAGGGATTTCCGGGAATCTATTCTGAATCGCGGTGGTAATCTGGAGTGTGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGTAATTTCGATCTTTTGATGCTCTACTTTTGATTTATTGCTCGTTTATTTGCTAGTTTCGTTCATCTCATGGTGAATGGTATGATATAATGAGTGTAGATTAGCGATTTCGGGTGCGTCGATGAGTATCTCAATAGCATTTACTTAAATCACTACTAAATCCAAAGGTTTAAGTTTATTTGTGAGATTGAAATTTAGTAAGAGCCTCAACAAGTGAAAGAAGTTTGAACACAGGATCTTCAGTCTTTACTTCAATTTTAGTAATAGGGATTCGGATTTAGAATCTTTGATACCGATGCCATGTTAATTTATCTCTATACTAAAAGATTTAAGCTTATAAGTTATGGCAAATTTTTTCTGTAACATATGACATGATATGATATCAATTCAAGTCTAGTCGTTTTACTGCGTGGTTGCTGTTGCCTAGATAATCATTTCCTCTGGTATCTGATTAATTAACTCTCCTGGATTGCCAGTTTATGCTAATGAGATTGATTTTTGAACGGCTTCAAGATCCAGAATTGGTATTTGTTTTGAATAACCAAGAAAATCAAATACGTAATCATACTTTGTTCTTATGATACTTTGATTGTTATAAATCATCATTGTTTGTTAGATTCAAGTAGTTTAATTGTAGAGAGTCGGTATTGAAATATTCAAATTTCGCTTGAGGGATGTCGTTCGGTATGCTGAGTGTTCTATATCTCATTCGGTATCAGGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATTCCTCCACAACAAGTTCCTAACTTCTCATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGGTAAAGAAAAGCTAGATACTTCACCTTCTACGCATCCATTTGTTTGTTTTTTGTTGATCATACTGCAACAAAGGAAGTGAGCTTTTTGTTCTTCTTTGGATGAAAAATAGTGGAGATGAAGTGAAATGTAGTTTATACCAACATCTCCTGTTTAATTAATTCTACATATTTAGAAACCATAACTTTTTGAACCTTCCTGCATATGTTCAGAGGTACTCTGGCATTTTCTCCCAAAGATGAAACTAGTTTAGCATAAAGTTTCTAAACATCTGTAACGGCCAAAGCCACTGCTAGCAAATATTGTCCTCTTTAGGCTTTCTCTTTCAAGCTTCCCTCAAAGTTTTTAAAACTCGTCTGCTAATGAGAGGTTTCACACCTCTACAAAGAATGTTTTGTTCTCTTCCCCAAACTAGATGTGGGAGATCTTACAATCCATCCCCTTTGGGACCCAGTGTTCTCGTTGATACTCGTTCCAATCTCCAATCGATGTGGAACCTCCAATTCACCCCCTACGGGGCTCAACCTTCTCGTTGTCACATCGCCTGGTGTCTGACTCTGATACCATTTGTAACGGCCCAAGCCCATTGCTATTGGATATTGTCTTTTCTAGGCTTTCTTTTCCTTTCGGGTTTTCCCTCAAAGTTTTTAAAACGCATCTGTTAGGGAGAGGTTTTCACACCCTTATAAAAATTGATTCATTTGGATCTCACAACATCTGTTAGTTTAAATTCATATCGTGCACCGTTTTCCAAAATTTGGTTATTCTGATGCAAAACTGTATTTCCAATGGGAAGCGGAATCTCCAAAACAATAATAGAACACTGGCTGGCTTTGTTTTGGATCCATGCCTGTAGTTTCTTTAGAGATTTCTGTTCCTTACCGTTTCTAACACAGAGGCAAACTTTTCACGAAGAATTGCATTACATCACTTGATTTATAGTTACTTCTTGTAATCATGATTATTGGGTTGTCACACTTATCCCCAAGTTTCATTACTGCAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCGGAGCTTCCTACTTCACACGCAGGTAGTGCATTCACATGCAGACCGACGAAGTCGAGCACGTCATACAAAAAGCCCAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCTGATCTTGGATGAACGAAGAAATGCACAGATGTTGAATTGGTATGCCTGTGAAAAATAGAGTTTATAATCTTACAAAATGTCTATGTATAGTATTATCGACATGGACATCTGATAGTATGCGTTATAGTAGTTTGCTCTGATCTTGTGGCTAGAATATTCGTTCAGTCTTTGTAACATTTTCTTTTGCTTTTGTACCTTATTTATTACCTTATTATAACTTTTGGATCTTATATGAAAAATATAAGATTATATTAAAGAATGGTAACTCATGTTGTAAAGATTAAAAGGGTTGTTTGTTTAAAGCTT AACTCGTTTTGATTTTGGCGAGTTCATGAACCTTCCGAAGAAAATTCATATAAACTTATCAGTAATGGAAGTTTCATAGCATATAAGGTAGGCCTAATTATGTAAATTTTTTTTAAGATGGTTTATCTCTAGACAAGGAATGTCTTAGCCTTCCAAATTCCTCAGCCACACACCAATCAAGCTCCACAGCCACACACCAATCAAGCTCCACAGCCACACAAATGGCCTCCACTCCTTTCCGCCTTGTTGTCTTCACCATCTTTCTTCATCTTCATTTCCCAAAATCTCTGCCCTTCCTCTTTTCTCTTCAATCCTCCACCATATACTTCCTCTTTCTCTATCCCCTTCCTTCCCGATTTTTCTTCTCTTCGATTCTCTCTTGGATTTATCCGGCGGCAGTGTTTTACCGGCACTGCGGTGCTTTGAGTTGCTGCTTTTCCTCCGAATTTCGTGGAGTTGATGATCTCGGAGTAGGAAACGGGAGAAGAGGGATTTCCGGGAATCTATTCTGAATCGCGGTGGTAATCTGGAGTGTGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATTCCTCCACAACAAGTTCCTAACTTCTCATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCGGAGCTTCCTACTTCACACGCAGGTAGTGCATTCACATGCAGACCGACGAAGTCGAGCACGTCATACAAAAAGCCCAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCTGATCTTGGATGAACGAAGAAATGCACAGATGTTGAATTGGTATGCCTGTGAAAAATAGAGTTTATAATCTTACAAAATGTCTATGTATAGTATTATCGACATGGACATCTGATAGTATGCGTTATAGTAGTTTGCTCTGATCTTGTGGCTAGAATATTCGTTCAGTCTTTGTAACATTTTCTTTTGCTTTTGTACCTTATTTATTACCTTATTATAACTTTTGGATCTTATATGAAAAATATAAGATTATATTAAAGAATGGTAACTCATGTTGTAAAGATTAAAAGGGTTGTTTGTTTAAAGCTT ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATTCCTCCACAACAAGTTCCTAACTTCTCATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCGGAGCTTCCTACTTCACACGCAGGTAGTGCATTCACATGCAGACCGACGAAGTCGAGCACGTCATACAAAAAGCCCAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCTGATCTTGGATGA MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCMKDVDKVKMEPPNPKNPQVPAKIPPQQVPNFSSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHAGSAFTCRPTKSSTSYKKPRIEMVDDEEFFTVPDLG
BLAST of Cp4.1LG00g02580.1 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 7.6e-81 Identity = 159/248 (64.11%), Postives = 189/248 (76.21%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. Swiss-Prot
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2) HSP 1 Score: 292.0 bits (746), Expect = 6.0e-78 Identity = 158/242 (65.29%), Postives = 181/242 (74.79%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2) HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 5.2e-29 Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. Swiss-Prot
Match: BBX23_ARATH (B-box zinc finger protein 23 OS=Arabidopsis thaliana GN=BBX23 PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TrEMBL
Match: E5GC89_CUCME (Salt-tolerance protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 462.6 bits (1189), Expect = 2.9e-127 Identity = 226/237 (95.36%), Postives = 232/237 (97.89%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TrEMBL
Match: A0A0A0KBS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G081450 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 7.0e-126 Identity = 223/237 (94.09%), Postives = 232/237 (97.89%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TrEMBL
Match: B3TLK3_CUCSA (Putative transcription factor OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 456.1 bits (1172), Expect = 2.7e-125 Identity = 222/237 (93.67%), Postives = 231/237 (97.47%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TrEMBL
Match: A0A061EJL3_THECC (COL domain class transcription factor isoform 2 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 4.3e-99 Identity = 183/239 (76.57%), Postives = 204/239 (85.36%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TrEMBL
Match: A0A061EKC2_THECC (COL domain class transcription factor isoform 1 OS=Theobroma cacao GN=TCM_020013 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 4.0e-97 Identity = 182/239 (76.15%), Postives = 203/239 (84.94%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein) HSP 1 Score: 301.6 bits (771), Expect = 4.3e-82 Identity = 159/248 (64.11%), Postives = 189/248 (76.21%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TAIR10
Match: AT2G31380.1 (AT2G31380.1 salt tolerance homologue) HSP 1 Score: 292.0 bits (746), Expect = 3.4e-79 Identity = 158/242 (65.29%), Postives = 181/242 (74.79%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1) HSP 1 Score: 141.0 bits (354), Expect = 9.6e-34 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2) HSP 1 Score: 129.4 bits (324), Expect = 2.9e-30 Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. TAIR10
Match: AT4G10240.1 (AT4G10240.1 B-box zinc finger family protein) HSP 1 Score: 124.8 bits (312), Expect = 7.2e-29 Identity = 59/114 (51.75%), Postives = 78/114 (68.42%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. NCBI nr
Match: gi|659120145|ref|XP_008460037.1| (PREDICTED: salt tolerance protein-like isoform X1 [Cucumis melo]) HSP 1 Score: 462.6 bits (1189), Expect = 4.1e-127 Identity = 226/237 (95.36%), Postives = 232/237 (97.89%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. NCBI nr
Match: gi|700191100|gb|KGN46304.1| (hypothetical protein Csa_6G081450 [Cucumis sativus]) HSP 1 Score: 458.0 bits (1177), Expect = 1.0e-125 Identity = 223/237 (94.09%), Postives = 232/237 (97.89%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. NCBI nr
Match: gi|821595467|ref|NP_001295820.1| (B-box zinc finger protein 24-like [Cucumis sativus]) HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125 Identity = 222/237 (93.67%), Postives = 231/237 (97.47%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. NCBI nr
Match: gi|659120149|ref|XP_008460039.1| (PREDICTED: salt tolerance protein-like isoform X2 [Cucumis melo]) HSP 1 Score: 456.1 bits (1172), Expect = 3.8e-125 Identity = 225/237 (94.94%), Postives = 231/237 (97.47%), Query Frame = 1
BLAST of Cp4.1LG00g02580.1 vs. NCBI nr
Match: gi|778711409|ref|XP_011656726.1| (PREDICTED: B-box zinc finger protein 24-like isoform X2 [Cucumis sativus]) HSP 1 Score: 451.4 bits (1160), Expect = 9.5e-124 Identity = 222/237 (93.67%), Postives = 231/237 (97.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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