Cp4.1LG00g02440.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02440.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG00 : 7487494 .. 7488217 (-)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTTTCTATTATTTACATAATGAACAGTCGAGCAGCTTGGGTGCTCAAATTCAAGCTGATTAACTAGAAAAAAAATTGAATAAAAGAATGAAGTCTTGGCTAAAGTTGATTCACTACATTGGAAACTAGAAAACGTAAGAAACCAAACTGGAAAACAGAAAAAACTAAGAGATATCGGAGAAAATGATTTTAATAGGAAATTTGAAAGAAGAATGGATGGAAAAGATTGAATTGCACAAAAGGTACTACATGAGAAAGAGAGAGTTCATACCATGGATTAAGGACTTGGAGACAAAAGTAGACACTCTACATTACAGTAGAAGGGAAATAGAAGAACAGAACATTCGGATGAGATCAAAAAATCAGTGGCTCAACAACACTAAGAATTTCGAGTTGGAGCTGACATTGACGTGTAAGGAGACATAAGCTTCTTCTTAGATAATCGCCTTAGTAGGGTAAGTCAAGAGTTTGAAACAAAAAATTGATGCATCGCAGGCTTGAGAGAACAAAATTAGGGCAAGATATGGAGCAATGTAAACAAAAATTTTCTCAGAGTGAAAATTAAAATTATCTATTGAGAAAGAACCCTAAAGGAAAAGGACTAAATCATTATTGGAAGAAAGCAAGCAAGCGAAGAGCGGCTTATCAAACGTGGCTTTGAGCCTGATAAGCATAGAGAGGAAGATGGAAGATTAAGCAAAAGAGCTCCAACAGCTTGA

mRNA sequence

ATGGTAAATGAAGTCTTGGCTAAAGTTGATTCACTACATTGGAAACTAGAAAACATATCGGAGAAAATGATTTTAATAGGAAATTTGAAAGAAGAATGGATGGAAAAGATTGAATTGCACAAAAGTAGAAGGGAAATAGAAGAACAGAACATTCGGATGAGATCAAAAAATCAGTGGCTCAACAACACTAAGAATTTCGAGTTGGAGCTGACATTGACAAAGCAAGCAAGCGAAGAGCGGCTTATCAAACGTGGCTTTGAGCCTGATAAGCATAGAGAGGAAGATGGAAGATTAAGCAAAAGAGCTCCAACAGCTTGA

Coding sequence (CDS)

ATGGTAAATGAAGTCTTGGCTAAAGTTGATTCACTACATTGGAAACTAGAAAACATATCGGAGAAAATGATTTTAATAGGAAATTTGAAAGAAGAATGGATGGAAAAGATTGAATTGCACAAAAGTAGAAGGGAAATAGAAGAACAGAACATTCGGATGAGATCAAAAAATCAGTGGCTCAACAACACTAAGAATTTCGAGTTGGAGCTGACATTGACAAAGCAAGCAAGCGAAGAGCGGCTTATCAAACGTGGCTTTGAGCCTGATAAGCATAGAGAGGAAGATGGAAGATTAAGCAAAAGAGCTCCAACAGCTTGA

Protein sequence

MVNEVLAKVDSLHWKLENISEKMILIGNLKEEWMEKIELHKSRREIEEQNIRMRSKNQWLNNTKNFELELTLTKQASEERLIKRGFEPDKHREEDGRLSKRAPTA

Homology

[Close]

BLAST of Cp4.1LG00g02440.1 vs. TrEMBL
Match: A0A0A0KV05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051400 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-08
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 3   NEVLAKVDSLHWKLEN---------------ISEKMILIGNLKEEWMEKI---------- 62
           NE LAKVD LH +L++               ISE M LI NLK+E  +KI          
Sbjct: 129 NEALAKVDFLHRELDSVRSQKRELENRKNKEISENMALIVNLKQEISKKIGLEQKILEDK 188

Query: 63  ---------------ELHKSRREIEEQNIRMRSKNQWLNNTKNFELELTLTKQASE 79
                           LH  RREIEEQNIRMRS+NQWL NTKN ELE+ LT + +E
Sbjct: 189 ERVLDRIKELETELDTLHYRRREIEEQNIRMRSENQWL-NTKNSELEMALTSKETE 243

[Close]

BLAST of Cp4.1LG00g02440.1 vs. NCBI nr
Match: gi|659102486|ref|XP_008452159.1| (PREDICTED: intracellular protein transport protein USO1 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-08
Identity = 51/116 (43.97%), Postives = 61/116 (52.59%), Query Frame = 1


Query: 3   NEVLAKVDSLHWKLEN---------------ISEKMILIGNLKEEWMEKI---------- 62
           NE LAKVD LH +L++               ISE + LIGNLK+E  +KI          
Sbjct: 162 NEALAKVDFLHRELDSVRSQKRELENRKNKEISENVALIGNLKQEISKKIGVEQKILEEK 221

Query: 63  ---------------ELHKSRREIEEQNIRMRSKNQWLNNTKNFELELTLTKQASE 79
                           LH  RREIEEQNIRMRS+NQWL NTKN ELE+ LT + +E
Sbjct: 222 ERVLIRIKDLETELDSLHYRRREIEEQNIRMRSENQWL-NTKNTELEMALTSRETE 276

[Close]

BLAST of Cp4.1LG00g02440.1 vs. NCBI nr
Match: gi|700198230|gb|KGN53388.1| (hypothetical protein Csa_4G051400 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 3   NEVLAKVDSLHWKLEN---------------ISEKMILIGNLKEEWMEKI---------- 62
           NE LAKVD LH +L++               ISE M LI NLK+E  +KI          
Sbjct: 129 NEALAKVDFLHRELDSVRSQKRELENRKNKEISENMALIVNLKQEISKKIGLEQKILEDK 188

Query: 63  ---------------ELHKSRREIEEQNIRMRSKNQWLNNTKNFELELTLTKQASE 79
                           LH  RREIEEQNIRMRS+NQWL NTKN ELE+ LT + +E
Sbjct: 189 ERVLDRIKELETELDTLHYRRREIEEQNIRMRSENQWL-NTKNSELEMALTSKETE 243

[Close]

BLAST of Cp4.1LG00g02440.1 vs. NCBI nr
Match: gi|778697521|ref|XP_004149765.2| (PREDICTED: golgin subfamily A member 6-like protein 22 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 51/116 (43.97%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 3   NEVLAKVDSLHWKLEN---------------ISEKMILIGNLKEEWMEKI---------- 62
           NE LAKVD LH +L++               ISE M LI NLK+E  +KI          
Sbjct: 162 NEALAKVDFLHRELDSVRSQKRELENRKNKEISENMALIVNLKQEISKKIGLEQKILEDK 221

Query: 63  ---------------ELHKSRREIEEQNIRMRSKNQWLNNTKNFELELTLTKQASE 79
                           LH  RREIEEQNIRMRS+NQWL NTKN ELE+ LT + +E
Sbjct: 222 ERVLDRIKELETELDTLHYRRREIEEQNIRMRSENQWL-NTKNSELEMALTSKETE 276

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g02440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV05_CUCSA	4.5e-08	43.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G051400 PE=4 SV=1	[more]

BLAST of Cp4.1LG00g02440.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g02440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102486\|ref\|XP_008452159.1\|	1.3e-08	43.97	PREDICTED: intracellular protein transport protein USO1 [Cucumis melo]	[more]
gi\|700198230\|gb\|KGN53388.1\|	6.5e-08	43.97	hypothetical protein Csa_4G051400 [Cucumis sativus]	[more]
gi\|778697521\|ref\|XP_004149765.2\|	6.5e-08	43.97	PREDICTED: golgin subfamily A member 6-like protein 22 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG00g02440	Cp4.1LG00g02440	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_25g00040.1:cds:005	Cp4.1_LG00_25g00040.1:cds:005	CDS
Cp4.1_LG00_25g00040.1:cds:004	Cp4.1_LG00_25g00040.1:cds:004	CDS
Cp4.1_LG00_25g00040.1:cds:003	Cp4.1_LG00_25g00040.1:cds:003	CDS
Cp4.1_LG00_25g00040.1:cds:002	Cp4.1_LG00_25g00040.1:cds:002	CDS
Cp4.1_LG00_25g00040.1:cds:001	Cp4.1_LG00_25g00040.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG00g02440.1	Cp4.1LG00g02440.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 30..50 scor