Cp4.1LG00g02200.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g02200.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Golgi apparatus membrane protein TVP23
Location	Cp4.1LG00 : 6098694 .. 6109565 (-)
Sequence length	1558

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAATTGAGAAATAGGTAAAAATTTATAGGGTAACTTCCACTAAATCGACGCATAGCGACGGAGGGAGTGGCATTTGCTCTCCATTTCTGCATCAACAAGCAAAATTCAACACATACCCACAAAATAATCTCTGCAAAATCTCTCCAACTTCCCGATCATGGATCCGAACGAGGTAAATTTACTCTCTCCCAACTTTTAAGGCCTTCCCCCATCTTTATTTTCTCATCTTTACGTGTTTAGTAATGTTGTTGATCTTCTGGGAACGGCATTTCCCCCTCTCCCTGCGCTTCTTGCTAGATCCAATCTTAAATTTTCGCCTGGGGCTACAATGGTGCCTACTTTTTTTTTGTTTGTGATTTGATTGAAAGAACCGAAGTAAATGAAAATCCGCGATTCATGTAAGATCTGAGCTAACGACGGGAAAATTATGGAGGATTTTCAAATTAGATTGGTTGAATTTCAACTGGTTTCAATTTTAGATTGCTTGGGTGAATAAAATGAACTTAGGGTTCCATTGGCCTTCTAGATTTGGAATGTTTTTACAGAGTCATTACTACCACCGTTTAACTTATACGCGTTTAACTCATACGATCCCTCTAATGCGTACAGCTGCCTGCGGAAAATTATGCGAATCCGAGGACTTGTCTCTTTCATGTTCTTTTTAAGGTATGTTCATATAATGATGATGATAAATGAGTTCATTCTTGAGTGATCTCTGGGGTTTATATGGTTGTTTTACACAGGCTGGAGCACTGGCTTTTTACATTCTTTCCTCTCTGTTTTTCAATAGCTTTGTTATCATCTTCGTGGTGACTGTTTTTCTGGCTGCTCTCGATTTCTGGGTTGTGAAGAATGTGAGTGGGCGTATTTTGGTTGGTTTGAGATGGTGGAATGAAATAGACGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTGGATCAAGAGGTGAGTGCTTAGTTTTTACATCTTCACCACTTGCTTCGCATTTATGTTACCAGGACAGCATTTTAATGTTTATTTCTCGCTTCTAATGCACATGGATCCTTGATTATACCTCAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTATCTTACAGTAAGAAAATGTTATGATCCCAAATATTTTGATAATTGGCCTGGTAAAGTCTTGTTTGCATGATTAAATGATTATGATCTTCAATGTTCAGGCCGTGGCATGGACTGTGCTGGGAATATTCTCGTTGATAAAATTGCAAGCAGATTATCTCCTTGTTGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATTGGTTTTACAAAATGCCGTAAAGGTAAGCAAACAAGCCAATAAGTTCTTTTAGTGTTCATACATCATTTCAATCATTGTTTGAAGATCATTGATATCTATTGTAGTGTTTGTATACCAAGCAGCATGGCAGGATATGAGAAGATAGATATCTGTTTCCTTCGTTTATAAACTTGTAGTGTAGCCCTTGGACACATACACATGCATATCGCCACAAATAGCTCATATACATATATATATTGTGATATCCTACATTGGTTAGGGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTTTCCTAGTTCCCTAGTTCCCTAGCATACGCGTTTTAAAGCCTTGTGAGGAAGCCCAAAAGGAAAAGTCTAAAGAGGACCATATCTGCTAGTGGTGGGCTTGGACTGTTACATATATTATAGTCCCGTTGTTGTTGTTTGGTTTGTTCAAGAACAAAGTAGAAGAAGTAGAATGGAGGGATGATCTGAAAGTTACCGAAGCTTTGTTCTAAGATTGATATAATGTTTGTGATTGTTGTATCAGATGCGAAGAAGCAGTTTCAGCGATTTGCAACACAGACCATTGCTTCCCAGTTCTCCTCTACATTACAATCAGCTTTTAGCGTTGTTTGATGTAAATGTTCATATTATTTTAGGCATTATTATTGCCTTGGATTTTGGGCTTCCTTCTCAACTGTTTTTTTTCTTTTTTCTTTTTGGATACGAATATTTAAAGATTGAATAATAATGAGTTGTTGTATTCTGAAAATCCAATGAAATGAATCTTCTTTTTGGTATACATACCCATATGTCCAATTCAATCTTACGGTTTGCATTTGATAGTTCGGATTCTTGAATCATATGAACACACATCGATAACTGTTAATATATACACAAAAACCATTTATTTACACTTTTTTTTTAATTAACATTACTTTTGAAAGTTTAGGGACATTTTTGAAACGTAGTACTAACCGATAAGAGTATAATAAAGTATTTTTGATATTTTAAAAAAGTTAATTATAAATTTCTTGAAGCTTGAAAAAGTGAGTAGAAAATGAGAAGTGGCCATTGGGGCGTTACAATGCTCTTAAAAAATTTGAACTGAAAGCTGCGGGGTTTGATCAGAAGCAACACAGGGATGAGCGCCAATAAACTGGCATCCTCCACTCGTTTCCACCCAATCCCATTGATAGTAAGAAACTCTCTCCAATGGATTAACAACTCCACCACTTTACAATCAACCCCACCTTTCACACCAAAATCGCCATCCATTTGGGCTACAAATCTCATCAAATCATACTTCGACAAGGGCCTATCCAAACACGCTCGTAACCTGTTCGATGAAATGCCTGAAAGAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATGACTATACTCAATCATGGGCTGTGTTCTGTGAGATGCTTAGGAGTCATATTCACCCAAATGCCTTCACTCTGTCTAGTGTTCTCAAGGCTTGCAAGGGCATGAAGGCTCTTTCATGTGGGACTTTGGCTCATAGTTTGGCCACGAAACACGGTATTGACGGGTCAATGTATGTCCAGAATGCACTCTTGGATATGTATGCTACTTGCTGTGCTACCATGGATGATGCTTTGACTGTGTTTAATGATATACCTCTCAAGACTGCTGTGTCTTGGACTACCTTGATTGCAGGGTTCACTCACAGAGGTGATGGCTACAGCGGCCTTCAAGTTTTCAGGCAAATGTTACTGGTAACTATAACCTTAACCATTTTATACTTTTTCCACCACTCTATTTCATCGTTCATATCTATTTTACAAGATAGTTAATGACAATAACTTATTAAGTACAAAATTGAAAGATTAGAGACCTATCACATATGCAATATTGAATTTTTTTGACGAACAGGATAATGTTGAACCAAACTCGTTTAGCTTTTCCATCGCGGTTAGAGCTTGTGCTTCAATCGGCTCGTATGCATATGGAAAACAAATACATGCAGCAGTCACCAAATATGGCCTCCATTCTGATATTCCAGTATTGAATTCAATACTCGACATGTATTGCAGGTGTAACTGTTTATGTGATGCAAAAAGATGTTTTGGTGAAATGACTGAAAGGAATTTGATTACATGGAACACCTTGATAGCAGGGTATGAAAGATCAGATTCCAGCGAGTCTTTAAGTTTATTTTCGCAAATGGGGTCTGAAGGCTATGAACCAAATTGTTTTACGTTCACAAGTATTACAGCAGCTTGTGCCAATTTAGCAGTCTTAGGGTGTGGACAACAGGTTCATGGTGGAATCATTCGTAGAGGATTTGACAATAGTGTAGCTTTGGTGAATGCACTTATCGACATGTATGCGAAGTGCGGGAACATAAATGATTCACACAAACTCTTCTGTGATATGCCTCGTAGAGACTTAGTGTCCTGGACTACCATGATGATTGGCTATGGATCACACGGATATGGAAAAGAGGTCATTAAGTTGTTCGATGAAATGGTTCGAAGTGGAATTCAACCTGATCGGATCGTGTTCATGGCGGTCCTAAGTGCTTGCAGCCATGCTGGACTTGTGAACAAGGGTCTAAGTTATTTCAGATCAATGCTGGAGGATTACAATCTTAACCCCGATCACGAAATCTATGGGTGTGTAGTGGACTTGCTTGGGCGTGCTGGGAGAGTCGAGGAAGCTTTTCAACTAGTCGAGAGTATGCCATTTGAACCCGACGAGTCGGTTTGGGGTGCCCTGTTGGGAGCATGTAAAGCATATGAGCTTTCAAATCTAGGAAAGTTGGCAGCTCAGAGAGTATTGGATACAAGGCCGAATATGGCAGGGACTTACCTGCTGTTGTCCAATATATATGCAGCTGAAGGCAAATGGGGTGAGTTTGCGAAAATGAGGAAGCTGATGAAAGGGATGGACAACAAGAAAGAAGTGGGAAAGAGTTGGATTGAAATTAGAAATGAAGTTTATAGTTTTGTGGTTGGAGATAAGATGGGGCCTCACATAGAGTGCGTGCATAAAGTTCTTAAACTACTTATTTGGCATATGAAGGATGATGGGGATGTCACAGATTTAGATTCACAACATGAATCATAGACCACATGAATATCAATATTTTCCAAAAACGGCGTCGAAGGTGCTCGAAACAAGAAATGCTGGGGCGATCTTCTTTTATGCTGATGCCACCTTGCCTTCCGCAAAGAAATGCTCAAAGGTACGAATGTCTTTCATATACCACGTACGTATCTATTGTTGATCGACATATGTTGAAGTGGAAGAACAACTTGAAGGGAGAGAGGTTTTTGAAGAAGAACCTTAAGCACTTATGCTTGTTAATTCTCTTTGTTGTTGCGAAAATAGCATACATCTCATGAGTATTTATAGCGGAGAAATCACAATCGATCTCCTAAACTTTCTCCTCAAGTTAAGCAACTAAACCCGGTGTCTCTCACAATCCCACGTTGTTCCATGTGTTTCAAGGGCAAGAGCCCATTTGGAAGCCCTATTTCATCTCCATGGTACACTTCATCTGCTTTGCCTTTGATTTCCTTGTTACAACAGACATTTTTCTCTTTATCATTTGCTTCTGAATCAGCAAGGCAGGGAAAATGATGTAGGATTCATATAGTCCATTGGTTTCTCTTTTGCCCTTCATTTTCTCTGGAATTACACGAATGCCATTGGGAAGAGTAAACAACATGAACAAGCAAGAGCTAGAGAATTCACAAGTTTAGTGTGGTATTGACACTGGCCCACATGCAGGCAGTTGAGAGGAAGAAATAGTATCCTTTCAAGGGAAGGAGGGATGATAGCCAATGAATTTGTGACACGTCAGATATACATACTAAACTGAGGCAATTAAAATTAGTTAATCATTTGTGCATGCAAAATTATTAAATTTTTGAACTTTTGAATTAATTTAGATTTTTTTTTGAGATGTCTATACATAAAAATTTCAAATTGAAGATCGGAATCGATTCACTTGTGATAGCTTAAGACTTTAATTTGTAGAATCATAAGATTGTTATATGTTAGATTGTATTTTGTGTTGTATGATACCATTAGTATGTTTGAAAATTGAGTTACATGATTGACAAATATTGTAAGAAAATTGAATATTGATGTCACGAGTAAGGAGAAGAAAAGGAATAGAAAGAGGCTAGTAAGAGAAGAGGAAACAGATGGTAGAGACATGATCGGAAGTTGAGCAGATGTAGGAGCTCCCCAAGAGGTCGAGTCGATCCAAGGGCACCTATTGGGTCAAGCTCCCTGTCAGACTAGAAGAGAAAGTTCGATCCAATGAGATATTTGTAGCACCTGGAATTTTAAGAAAATAAATAAAAGATATTTTTTAAAAAAAAAAAAAAAAAGGAAGGAACGAAGGAAAGCAGAATGGCACGCACACAAGTTAGAGAAGATGACCCCAACTAGTCCTCTAACAAGCAAGTAAGCCAATTAGTAGGTTACTTCTTTACATTAGAGCTTTGGTCGGTGGCAGGTAGAAGGGCCTTTGCTCAACGGATAAAAGTTACTAATAGGATATTAATAGAGAGACCGTAGTAAGGAGACTTTAACAGACCTGTTAGAGTCAAGCCTCAACTTTCATAATGTGAGTTTCCTTCTCCCCTCAGCTTGATAACTTCTATCTACATCAAGATCTAACCCTGCTCTCTAGTGATCTTCGCCCCATTCCATGGCACCCGCATGAAAAGAAAGATCGACAAATAGCATACCAATCAGATCCGCCTCTCTAATTCACTTGGAAAAAGATAGACCAAGCAGACAATACTGTCAACGTTAGTTTTTTAACCTTCTCTTTAACAAATTTGAAGCTAGCCACTTTCACAAGTTTTATTCTTTTGACTTAATGTAGGACGTATTGAGAAATTTTGGAGAAATTTTGGAGAAATTTGGACTATCCTCGAAGACCAGAAACAAGCTCGAGAAGTCTACATTAATGTAAGTAACTGCATAGAACAAGTTTCTAAGAAATGTTTGAAAAAGTCAATTTGGAATGAGTGCAAATGATTTAGACCATACTTAGGGAAAATATTATATTTATTGTATTTGATATTTAATATGTTAGATATATTAAATAAAATTATTTATTTAAAATTTAAATGAAATTTAAATTAAATATATATTTTGATATTTATGATATTTAAATATGATATAAAGAAGATTATATCATAATATATTAAATATTTAAACAAAATTTGACAAAATTTCTACAAGCTTCATAGGACCGTTGGTTTTCTTTAAAACTCTACTTCTTCAATTCCTTCGGTGATTATCTTTCTAGAGGCTATCAAGGAGATCTTGTTAAAGAACTTTTACATCGTTGGAATATATCAAGAAGGCTTGGAAGCTACAATTTCCATTCTTAATAAAATTAAATTGGTTCTCAATGCGTCTGCTTTAAGAATGAAGAGACTATCTCCAAGATTAGATCTTATCTCATGTTTTTAGGATACCCGAGACTAGCTCCTTGAAGCTAATCCAATCTTTGAGTGGACTCAGGTCTAGATCTTTGATCATCATTGACGATTTTGGGGTGCACGGTCTACTGAAAACATATTGATCTAGGTCAAAACCGCTCTAGTTCTAGCATCATAATCTTGACTCAAATAGTTCATGCATGCTTGTTAGGAAGATATTCCTATCAATCACCTGATGCAGCTAGGTGGCTTAACGCGAACTTTTGCCTCCAAGGTACTCTGTTCTAACTCATTGGTCATCTCTAGGTGCTAAGGAGGTCTATTGGGTTCCTAAGGTAGCTAGGTGACTTAAAGCAAACTTTTGACTTCAAGGTACTCTATTCTAATTCCTTGAGTCTTCTTAGTCTGGGAGCACTAGAGTCAAGACCCTCTGACAGCCGCTCACGATCTTAAGGTGCTTAGTCTACTAGAGGTGACCTGACCTAGATCATCATCTAGACATCTTGAATCTACACATTAGTCCTAGCTCTGTGCAAATAAACACGATCTACAAGGAGAACTTGCAATCAATCACCTGGAGCTAAACATACTATATCATGCATTCATACAAGTTCAACGGCGAGATAATATCTATCAATCGCCCAGAGCACACGTTACAATATCTCATGCTCCATTCTAACATGGAAAAAAAAAATGAAAATTAACATGCATCTTAAATTCTCATCTTAGGGGCATTTCGATAAATATGTATAACATACCTAGCATTTTTCATCTAAAATGCCCTTATGAGGTCCTAAACATGCATATTCTAACCACCTAAGGTAAAATATGCTCATATACTAACACATCCTAGCTATCCCTAAAAGTATTACGTGAGAAAAATTCAAATGGCTAATTACATTGGTGATGCGTGCCTTCTTGAGCTAACTTTTCCGCATGTTATGAGCTCCAAATTTTATGAGGTTTCGCTGGAAGGTTCTAATTCAAGCCATGATAAGGTCAATATCGAAATCAAAGTGAAAAACAGTCGAACAGAGGTCAAAATCTATTCAAAATTGGTCTAAACTACCTAACTTACCGTTCTTGATGATCGTCGAAACTCTGACTTCCAATCTTATCCTCTTCCGATTTCTTCATCAAAGTTCTACAAAATCTCCTAAACAAAACAACATATTAAAATTTGAAAGCCTAATTCCTCAAATTTCTTGGATCTAGAGAAAAACCGAGGAACAAAAACTCGAAAGCCATTCCTCTTGTTCTTCCTCGATTTTTTATGGATTTAAGTGATTCAAACACTTGGATTGGTTCTCCCAAAATCACTTAGCATTTGGTATGAAGGATCTTTTTGGCCAAATTCCTACTCGAAGGTGCCATTTGGGATGGGTATCAGGTTCTCTTAAAATCCTAATTGATTTAAACCAAGACATCTCAACCATGCCTCAAGAAAAATGGATTTCATTTATGGTTAGATATGGGTCTTAGACAAGTATCAAAGTTTTCTTATATTATTTGTTAAATGATTCGAATCTCAAACTAGTGTTATATGAATCTTACTAAATCTCGTGTTATATGAATCTTACTAATCATTTCTCTTGAGGAGATTCCTTATCACAAATCATTAACCTACTGTTACTATAATCATTAGGAAATAAGGGTCACATTAATCATTTGATTTTCCTACTTTTTATATTTTTATATTTTTCTTGAGTTTCTGATATACTTAAACATTTTTCTCTTTTACATCTTTCTCTTTTACATCATCTTAAAATTTAGGGCATTTTTCTCTTTTACATCGTCTTAAAATTTAGTCTCTATGTTCTTCAATAAAATTTTGGAAACTTGAACTTCAAAGGAAAAATCAAAAAATTACTTATTGTCGGTGTTACAACTATGATTTAAAAATGCTGGACCTAAAGCTTGTTGTATGTCACGAGCATGGATACTTCTCCAAACATGTTTGGTACGAACATGTACTTAGTATTTAAGTATTCTTAAATACTCAAACCTCTAGTAAAGCTCAAGAGATCATTACTTTCATCTCCACGGTGGAACAACTGCACGACATCGAGAGATTGTAATTTCAAGAAAATATAGTAAACATACATAAATTTCAAAATGAAAGCTCTGTAAATCCTTTTTTTTCTTTTGATGTCAATAAATTAGACGTAAACTAGAAACTTAACAATGAACTGAACTATGAAGCAGAAGTAGCATTGCAATTCAAGAGTGTATCAACCACCCTTCCATGGATATCGAAGGTAGTCAATCAATCCCTTGTATAATCAAATACCTATTGTATGTAATCACTCGATCTCACTCATGAATCCAATTAGAGAAAACGTTGAAGGAACGCTTTTATCTCATCAATGTAGGGAGATCGAGTAGGAATTATATGACCAGAGTCGTGTTCGATTATCACAGAACAACCTGCATCAAAACAAGAAGCAAGGTCTCTGCTCATTTTGTTCGCGATCTGCCTATCATTTCCCTTATCGCTACCAAATATGTGAAGTGAGGGGCAGCTGATCACTCCATGCTCCAACTCCGGTATTTGAAGAGGAAACCCCGAACACAACACTGCAAATCGAACGTCTACCGCACCCTTTACACTCATTTTTCTCGAACAAACTGCAGCAGTCATTGCTGCTCCTTGTGAAAACCCCAAGATTCCATCAAATGGTCCTTTCTCAGAAAATACAGTCTTCAAATACGCCAATGATTCTTCAAATCCATCAGTTTGTTTCTGGTACTGGAGTGGATCAAATACGGCATCTGCAACTTCCCATTTTGTTTCACTCCTTTCACCTGTATTGTCTTCTGCTATTAACCAAGCAAACTTCTTCTTGCAATGCTCTACTGGTGGAGGACAATTTGGTTGCACCGAAGAAGTCACACAAGTTTCCCGGTCTCGGGGATGGTAAATAAACGATAACTCATGAGGTGCATCGACATACACAAACTCCACCATGGCTTTGAGTTTCTTGGCCAATGATGCCGTTCTTCCTTTAAAGCTTGAAGCATTCTGTCTAAATCCATGCAAACATAGGATTCTCAATTTTCTTGGTGACCTACAAACCTAAATAAGAGTTTCAGTAAAAACTAAATTAGAGGAAGAAGATAGATTGGACCTCCAACCTCTTAGGCTCAGAACAGCAGGGCAACCAAGTTCTTTTAAAGTTGGACTTTAAACTGCTAAATATCAGTAATATAATTTGATGGAAAACAAAACATGAACACCACATAGAGGATTTGTTGGTAAACACTTCATGGGATCTGAGTATTTTTGAGATCAAGGAGTCGAGGTGACGATATTAAGAATTAACACAGACCTTACCATTACTCCAAGGAAGTTGCTGGGAACCAATTTCGTGATCACTTTGCTGTGAAACTACTTCCAACTTTGTGCTCTGGAATTGTGAAATCGGCCCGCCATCCTTGCCGTTCTTCCGGCAGAGCTCACAAACATAAAGGGTGTTCTTCTTCTGAGCCGTGATAACAGGTAGCAGAAGCAGGATTGCACAAATCACAAGAAAGCTAAATGTGATCAGAAATAAGATGATAAGGAGATAAGAAAAGTGAATCTTTGAATTCATGCTGTTGCTAAGAAATCATTAAATAATGGAACAGCAAGCCAGATATGATTGAGGGAAAAGAGATTACTATTATAGCAGACCTGGCAATTATCACACACCAAAACAAGCATTCGACAATATTTACACCGACAGCGAGAAGAATAATCATCAAAGGGATCTCCACAATTAAGGCAGGTTCCTATGATATCTTCCGTTGAGCTCCCAACTGATATCCTATAAGATATAACCACAGAAAAGAATAGTAAGAATATTTCAGCTCAAATAGAAACATCATTCATTTCTCCAGTTTCCCATGATGCTGCAGTCACCAATTCCTCTTAGAATATTTGATAATTTCAAAAGTTTCAAGAAATCTACTTTATGAACCAAATTATGTTCATAAAATTGTTTGGTCAATACTTGAATGAATATATATCATATTGGACGTCTTCATCTTTTGAATATTGTCTAAACTTATAGGATGCTGAGGGCGTCAGATATTTCACCTGTGATCAAACACAAAATTCTTTCC

mRNA sequence

AACAATTGAGAAATAGGTAAAAATTTATAGGGTAACTTCCACTAAATCGACGCATAGCGACGGAGGGAGTGGCATTTGCTCTCCATTTCTGCATCAACAAGCAAAATTCAACACATACCCACAAAATAATCTCTGCAAAATCTCTCCAACTTCCCGATCATGGATCCGAACGAGCTGCCTGCGGAAAATTATGCGAATCCGAGGACTTGTCTCTTTCATGTTCTTTTTAAGCTTTGTTATCATCTTCGTGGTGACTGTTTTTCTGGCTGCTCTCGATTTCTGGGTTGTGAAGAATGTGAGTGGGCGTATTTTGGTTGGTTTGAGATGGTGGAATGAAATAGACGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTGGATCAAGAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTATCTTACAGCCGTGGCATGGACTGTGCTGGGAATATTCTCGTTGATAAAATTGCAAGCAGATTATCTCCTTGTTGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATTGGTTTTACAAAATGCCGTAAAGATGCGAAGAAGCAGTTTCAGCGATTTGCAACACAGACCATTGCTTCCCAGTTCTCCTCTACATTACAATCAGCTTTTAGCGTTCTGCGGGGTTTGATCAGAAGCAACACAGGGATGAGCGCCAATAAACTGGCATCCTCCACTCGTTTCCACCCAATCCCATTGATAGTAAGAAACTCTCTCCAATGGATTAACAACTCCACCACTTTACAATCAACCCCACCTTTCACACCAAAATCGCCATCCATTTGGGCTACAAATCTCATCAAATCATACTTCGACAAGGGCCTATCCAAACACGCTCGTAACCTGTTCGATGAAATGCCTGAAAGAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATGACTATACTCAATCATGGGCTGTGTTCTGTGAGATGCTTAGGAGTCATATTCACCCAAATGCCTTCACTCTGTCTAGTGTTCTCAAGGCTTGCAAGGGCATGAAGGCTCTTTCATGTGGGACTTTGGCTCATAGTTTGGCCACGAAACACGGTATTGACGGGTCAATGTATGTCCAGAATGCACTCTTGGATATGTATGCTACTTGCTGTGCTACCATGGATGATGCTTTGACTGTGTTTAATGATATACCTCTCAAGACTGCTGTGTCTTGGACTACCTTGATTGCAGGGTTCACTCACAGAGGTGATGGCTACAGCGGCCTTCAAGTTTTCAGGCAAATGTGTAACTGTTTATGTGATGCAAAAAGATGTTTTGGTGAAATGACTGAAAGGAATTTGATTACATGGAACACCTTGATAGCAGGGTATGAAAGATCAGATTCCAGCGAGTCTTTAAGTTTATTTTCGCAAATGGGGTCTGAAGGCTATGAACCAAATTGTTTTACGTTCACAAGTATTACAGCAGCTTGTGCCAATTTAGCAGTCTTAGGGATGCTGAGGGCGTCAGATATTTCACCTGTGATCAAACACAAAATTCTTTCC

Coding sequence (CDS)

ATGCGAATCCGAGGACTTGTCTCTTTCATGTTCTTTTTAAGCTTTGTTATCATCTTCGTGGTGACTGTTTTTCTGGCTGCTCTCGATTTCTGGGTTGTGAAGAATGTGAGTGGGCGTATTTTGGTTGGTTTGAGATGGTGGAATGAAATAGACGATATGGGTGAGAGTGTGTGGAAATTTGAAAGCCTGGATCAAGAGTCATTGGCTCGGATGAACAAAAAAGATTCCTGGCTGTTCTGGTGGACCTTGTATCTTACAGCCGTGGCATGGACTGTGCTGGGAATATTCTCGTTGATAAAATTGCAAGCAGATTATCTCCTTGTTGTAGGAGTTTGTTTGACTTTGAGCATTGCAAACATTATTGGTTTTACAAAATGCCGTAAAGATGCGAAGAAGCAGTTTCAGCGATTTGCAACACAGACCATTGCTTCCCAGTTCTCCTCTACATTACAATCAGCTTTTAGCGTTCTGCGGGGTTTGATCAGAAGCAACACAGGGATGAGCGCCAATAAACTGGCATCCTCCACTCGTTTCCACCCAATCCCATTGATAGTAAGAAACTCTCTCCAATGGATTAACAACTCCACCACTTTACAATCAACCCCACCTTTCACACCAAAATCGCCATCCATTTGGGCTACAAATCTCATCAAATCATACTTCGACAAGGGCCTATCCAAACACGCTCGTAACCTGTTCGATGAAATGCCTGAAAGAGATGTGGTTGCCTGGACTGCTATGATTGTTGGCTTTACTTCTTGCAATGACTATACTCAATCATGGGCTGTGTTCTGTGAGATGCTTAGGAGTCATATTCACCCAAATGCCTTCACTCTGTCTAGTGTTCTCAAGGCTTGCAAGGGCATGAAGGCTCTTTCATGTGGGACTTTGGCTCATAGTTTGGCCACGAAACACGGTATTGACGGGTCAATGTATGTCCAGAATGCACTCTTGGATATGTATGCTACTTGCTGTGCTACCATGGATGATGCTTTGACTGTGTTTAATGATATACCTCTCAAGACTGCTGTGTCTTGGACTACCTTGATTGCAGGGTTCACTCACAGAGGTGATGGCTACAGCGGCCTTCAAGTTTTCAGGCAAATGTGTAACTGTTTATGTGATGCAAAAAGATGTTTTGGTGAAATGACTGAAAGGAATTTGATTACATGGAACACCTTGATAGCAGGGTATGAAAGATCAGATTCCAGCGAGTCTTTAAGTTTATTTTCGCAAATGGGGTCTGAAGGCTATGAACCAAATTGTTTTACGTTCACAAGTATTACAGCAGCTTGTGCCAATTTAGCAGTCTTAGGGATGCTGAGGGCGTCAGATATTTCACCTGTGATCAAACACAAAATTCTTTCC

Protein sequence

MRIRGLVSFMFFLSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEIDDMGESVWKFESLDQESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKLQADYLLVVGVCLTLSIANIIGFTKCRKDAKKQFQRFATQTIASQFSSTLQSAFSVLRGLIRSNTGMSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITWNTLIAGYERSDSSESLSLFSQMGSEGYEPNCFTFTSITAACANLAVLGMLRASDISPVIKHKILS

Homology

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BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot
Match: TVP23_ARATH (Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.8e-66
Identity = 125/152 (82.24%), Postives = 144/152 (94.74%), Query Frame = 1


Query: 6   LVSFMFFLSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEIDDMGESVWKFESLDQ 65
           ++S +FF SFVIIFVVTV LAALDFWVVKNVSGRILVGLRWWNEI+D+GESVWKFESLDQ
Sbjct: 35  ILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQ 94

Query: 66  ESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKLQADYLLVVGVCLTLSIANIIGFTK 125
           ESLARMNKKDSWLFWWTLYL A AW +LG+FSLI+ QADYLLVVGVCL+L++ANIIGFTK
Sbjct: 95  ESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTK 154

Query: 126 CRKDAKKQFQRFATQTIASQFSSTLQSAFSVL 158
           C+KDAKKQFQ+FA+QTIAS+F ST+QSAF+++
Sbjct: 155 CKKDAKKQFQQFASQTIASRFQSTVQSAFTLV 186

[Close]

BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-56
Identity = 110/204 (53.92%), Postives = 141/204 (69.12%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWIN-NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGL 226
           MS  KLA S  F PIP  VR+SL+     S+     PP+ PK   I ATNLI SYF+KGL
Sbjct: 1   MSITKLARSNAFKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGL 60

Query: 227 SKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKA 286
            + AR+LFDEMP+RDVVAWTAMI G+ S N   ++W  F EM++    PN FTLSSVLK+
Sbjct: 61  VEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKS 120

Query: 287 CKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVS 346
           C+ MK L+ G L H +  K G++GS+YV NA+++MYATC  TM+ A  +F DI +K  V+
Sbjct: 121 CRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVT 180

Query: 347 WTTLIAGFTHRGDGYSGLQVFRQM 370
           WTTLI GFTH GDG  GL++++QM
Sbjct: 181 WTTLITGFTHLGDGIGGLKMYKQM 204

[Close]

BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-27
Identity = 74/225 (32.89%), Postives = 117/225 (52.00%), Query Frame = 1


Query: 215 NLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHP 274
           N++  Y   G+   AR +FD MPERDVV+W  M++G+    +  ++   + E  RS I  
Sbjct: 118 NMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKF 177

Query: 275 NAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTV 334
           N F+ + +L AC   + L     AH      G   ++ +  +++D YA  C  M+ A   
Sbjct: 178 NEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK-CGQMESAKRC 237

Query: 335 FNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITWNTL 394
           F+++ +K    WTTLI+G+   GD              +  A++ F EM E+N ++W  L
Sbjct: 238 FDEMTVKDIHIWTTLISGYAKLGD--------------MEAAEKLFCEMPEKNPVSWTAL 297

Query: 395 IAGYERSDS-SESLSLFSQMGSEGYEPNCFTFTSITAACANLAVL 439
           IAGY R  S + +L LF +M + G +P  FTF+S   A A++A L
Sbjct: 298 IAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASL 327

[Close]

BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-27
Identity = 75/239 (31.38%), Postives = 128/239 (53.56%), Query Frame = 1


Query: 216 LIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPN 275
           L+  Y   G    A+ +FDEM +R+VV+W ++I  F       ++  VF  ML S + P+
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252

Query: 276 AFTLSSVLKACKGMKALSCGTLAHSLATKHG-IDGSMYVQNALLDMYATCCATMDDALTV 335
             TL+SV+ AC  + A+  G   H    K+  +   + + NA +DMYA  C+ + +A  +
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAK-CSRIKEARFI 312

Query: 336 FNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITWNTL 395
           F+ +P++  ++ T++I+G+               M      A+  F +M ERN+++WN L
Sbjct: 313 FDSMPIRNVIAETSMISGYA--------------MAASTKAARLMFTKMAERNVVSWNAL 372

Query: 396 IAGY-ERSDSSESLSLFSQMGSEGYEPNCFTFTSITAACANLAVLGMLRASDISPVIKH 453
           IAGY +  ++ E+LSLF  +  E   P  ++F +I  ACA+LA L +   + +  V+KH
Sbjct: 373 IAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH-VLKH 415

[Close]

BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-26
Identity = 75/229 (32.75%), Postives = 123/229 (53.71%), Query Frame = 1


Query: 212 WATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSH 271
           W T ++ +Y  +G        FD++P+RD V+WT MIVG+ +   Y ++  V  +M++  
Sbjct: 83  WNT-VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG 142

Query: 272 IHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDA 331
           I P  FTL++VL +    + +  G   HS   K G+ G++ V N+LL+MYA C   M  A
Sbjct: 143 IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM-A 202

Query: 332 LTVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITW 391
             VF+ + ++   SW  +IA   H   G   L + +            F +M ER+++TW
Sbjct: 203 KFVFDRMVVRDISSWNAMIA--LHMQVGQMDLAMAQ------------FEQMAERDIVTW 262

Query: 392 NTLIAGY-ERSDSSESLSLFSQMGSEG-YEPNCFTFTSITAACANLAVL 439
           N++I+G+ +R     +L +FS+M  +    P+ FT  S+ +ACANL  L
Sbjct: 263 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKL 295

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL
Match: A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 8.9e-93
Identity = 168/203 (82.76%), Postives = 182/203 (89.66%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           MS +KLASS  FHPIPLIVRNSLQWI+NST LQS PPFTP+ PS+WATNLIKSYFDKGL+
Sbjct: 1   MSVDKLASSPHFHPIPLIVRNSLQWISNST-LQSNPPFTPEGPSVWATNLIKSYFDKGLT 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
           + A NLF+E+PERDVV WTAMIVGFTSCN Y Q+W +F EMLRS + PNAFT+SSVLKAC
Sbjct: 61  REACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGMKALSCG LAHSLATKHGID S+YVQNALLDMYA  CATMDDAL+VFNDIPLKTAVSW
Sbjct: 121 KGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSW 180

Query: 347 TTLIAGFTHRGDGYSGLQVFRQM 370
           TTLIAGFTHRGDGYSGL  FRQM
Sbjct: 181 TTLIAGFTHRGDGYSGLLAFRQM 202

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL
Match: W9QSM5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018897 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 6.2e-86
Identity = 168/306 (54.90%), Postives = 205/306 (66.99%), Query Frame = 1


Query: 184 IVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVA 243
           ++RNSLQ  N  T  QS PPF PK+PS+ ATNLIKSY +KGL K AR++FDEMP +DVVA
Sbjct: 1   MIRNSLQ--NRIT--QSNPPFLPKAPSVLATNLIKSYLEKGLVKEARSVFDEMPHKDVVA 60

Query: 244 WTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKACKGMKALSCGTLAHSLAT 303
           WTAM+ G+TSCND+  +W +FC M+RS + PNAFT SSVLKAC+GMKAL CG   H    
Sbjct: 61  WTAMVEGYTSCNDHGHAWLLFCAMVRSEVGPNAFTFSSVLKACRGMKALLCGASVHGSVV 120

Query: 304 KHG--IDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSWTTLIAGFTHRGDGYS 363
           K G  ++GS+YV+NAL+DMYATCCA+MDDA  VF D+ +K AVSWTTLI GFTHRGDGY 
Sbjct: 121 KRGVTVEGSVYVENALMDMYATCCASMDDACRVFRDMFVKNAVSWTTLITGFTHRGDGYM 180

Query: 364 GLQVFRQM------------------------------CN-------------------C 423
           GL+   ++                              C                    C
Sbjct: 181 GLREDAELNPFSFSIAVRACASISSRTFGRQIHAAVIKCGFESNLVVMNAVLDMYCRYAC 240

Query: 424 LCDAKRCFGEMTERNLITWNTLIAGYERSDSSESLSLFSQMGSEGYEPNCFTFTSITAAC 439
           L +A +CF EMTE+NLITWNTLIAGY+R DSSE L LFSQM S+G+ PNCFTF+++TA C
Sbjct: 241 LSEANQCFLEMTEKNLITWNTLIAGYQRMDSSECLHLFSQMESQGFRPNCFTFSNVTAGC 300

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL
Match: F6I4U5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00870 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.1e-77
Identity = 168/333 (50.45%), Postives = 189/333 (56.76%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           MS  KL S+T FHPIPLIVRNS+Q + N TT    PPF PK PS+ AT LIKSYF KGL 
Sbjct: 1   MSTRKLLSTTHFHPIPLIVRNSIQLVQNCTT-PPNPPFIPKGPSVLATTLIKSYFGKGLI 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
             AR LFDEMPERDVVAWT MI G+TSCN++T +W VFCEM+   + PNAFT+SSVLKAC
Sbjct: 61  GEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGMK LS G L H LA KHG+DG +YV NAL+DMYATCC +MDDA  VF  I LK  VSW
Sbjct: 121 KGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSW 180

Query: 347 TTLIAGFTHRGDGYSGLQVFRQMC----------------NCLCDAKRCFGEMTERNLIT 406
           TTLIAG+THR DGY GL+VFRQM                  C       FGE     +  
Sbjct: 181 TTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTK 240

Query: 407 WNTLIAGYERS--------DSSESLSLFSQMGSEGYE----------------------- 439
                 G+E +        D     S FS+     YE                       
Sbjct: 241 -----HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPTE 300

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL
Match: B9RFL6_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1435710 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.1e-74
Identity = 147/278 (52.88%), Postives = 183/278 (65.83%), Query Frame = 1


Query: 217 IKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNA 276
           +KSYF+KGL + ARN+FDEM ERDVVAWT MI G+ SCN++  +W++FC+M+ S ++PNA
Sbjct: 1   MKSYFEKGLVREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNPNA 60

Query: 277 FTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFN 336
           FT+SSVLKACKGMK+LSCGTL H  A KHGI+GS++V NAL+D YATCC +M +A  VF 
Sbjct: 61  FTISSVLKACKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFC 120

Query: 337 DIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQM------CN----------CLCDAKRCF 396
            I +K AVSWTTLIAG+TH+GDG+ GLQ+FRQM      CN          C       F
Sbjct: 121 GIEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNF 180

Query: 397 G----------------------------------------EMTERNLITWNTLIAGYER 439
           G                                        EMT R+LITWNT+IAGYER
Sbjct: 181 GKQIHAAVIKHGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYER 240

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL
Match: A0A0A0L2G2_CUCSA (Golgi apparatus membrane protein TVP23 OS=Cucumis sativus GN=Csa_4G499830 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-70
Identity = 141/152 (92.76%), Postives = 149/152 (98.03%), Query Frame = 1


Query: 6   LVSFMFFLSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEIDDMGESVWKFESLDQ 65
           ++S +FF SFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEI+D+GESVWKFESLDQ
Sbjct: 32  ILSSLFFNSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQ 91

Query: 66  ESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKLQADYLLVVGVCLTLSIANIIGFTK 125
           ESL+RMNKKDSWLFWWTLYLTAVAWTVLGIFSLIK QADYLLVVGVCLTLSIANIIGFTK
Sbjct: 92  ESLSRMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKFQADYLLVVGVCLTLSIANIIGFTK 151

Query: 126 CRKDAKKQFQRFATQTIASQFSSTLQSAFSVL 158
           CRKDAKKQFQ+FATQTIASQFSSTLQSAFSV+
Sbjct: 152 CRKDAKKQFQQFATQTIASQFSSTLQSAFSVV 183

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10
Match: AT1G09330.1 (AT1G09330.1 unknown protein)

HSP 1 Score: 252.7 bits (644), Expect = 4.4e-67
Identity = 125/152 (82.24%), Postives = 144/152 (94.74%), Query Frame = 1


Query: 6   LVSFMFFLSFVIIFVVTVFLAALDFWVVKNVSGRILVGLRWWNEIDDMGESVWKFESLDQ 65
           ++S +FF SFVIIFVVTV LAALDFWVVKNVSGRILVGLRWWNEI+D+GESVWKFESLDQ
Sbjct: 35  ILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQ 94

Query: 66  ESLARMNKKDSWLFWWTLYLTAVAWTVLGIFSLIKLQADYLLVVGVCLTLSIANIIGFTK 125
           ESLARMNKKDSWLFWWTLYL A AW +LG+FSLI+ QADYLLVVGVCL+L++ANIIGFTK
Sbjct: 95  ESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTK 154

Query: 126 CRKDAKKQFQRFATQTIASQFSSTLQSAFSVL 158
           C+KDAKKQFQ+FA+QTIAS+F ST+QSAF+++
Sbjct: 155 CKKDAKKQFQQFASQTIASRFQSTVQSAFTLV 186

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10
Match: AT1G56570.1 (AT1G56570.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 222.2 bits (565), Expect = 6.3e-58
Identity = 110/204 (53.92%), Postives = 141/204 (69.12%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWIN-NSTTLQSTPPFTPKSPSIWATNLIKSYFDKGL 226
           MS  KLA S  F PIP  VR+SL+     S+     PP+ PK   I ATNLI SYF+KGL
Sbjct: 1   MSITKLARSNAFKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGL 60

Query: 227 SKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKA 286
            + AR+LFDEMP+RDVVAWTAMI G+ S N   ++W  F EM++    PN FTLSSVLK+
Sbjct: 61  VEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKS 120

Query: 287 CKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVS 346
           C+ MK L+ G L H +  K G++GS+YV NA+++MYATC  TM+ A  +F DI +K  V+
Sbjct: 121 CRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVT 180

Query: 347 WTTLIAGFTHRGDGYSGLQVFRQM 370
           WTTLI GFTH GDG  GL++++QM
Sbjct: 181 WTTLITGFTHLGDGIGGLKMYKQM 204

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10
Match: AT2G21090.1 (AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-29
Identity = 74/225 (32.89%), Postives = 117/225 (52.00%), Query Frame = 1


Query: 215 NLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHP 274
           N++  Y   G+   AR +FD MPERDVV+W  M++G+    +  ++   + E  RS I  
Sbjct: 118 NMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKF 177

Query: 275 NAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTV 334
           N F+ + +L AC   + L     AH      G   ++ +  +++D YA  C  M+ A   
Sbjct: 178 NEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAK-CGQMESAKRC 237

Query: 335 FNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITWNTL 394
           F+++ +K    WTTLI+G+   GD              +  A++ F EM E+N ++W  L
Sbjct: 238 FDEMTVKDIHIWTTLISGYAKLGD--------------MEAAEKLFCEMPEKNPVSWTAL 297

Query: 395 IAGYERSDS-SESLSLFSQMGSEGYEPNCFTFTSITAACANLAVL 439
           IAGY R  S + +L LF +M + G +P  FTF+S   A A++A L
Sbjct: 298 IAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASL 327

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10
Match: AT2G13600.1 (AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 8.1e-29
Identity = 75/239 (31.38%), Postives = 128/239 (53.56%), Query Frame = 1


Query: 216 LIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPN 275
           L+  Y   G    A+ +FDEM +R+VV+W ++I  F       ++  VF  ML S + P+
Sbjct: 193 LVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPD 252

Query: 276 AFTLSSVLKACKGMKALSCGTLAHSLATKHG-IDGSMYVQNALLDMYATCCATMDDALTV 335
             TL+SV+ AC  + A+  G   H    K+  +   + + NA +DMYA  C+ + +A  +
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAK-CSRIKEARFI 312

Query: 336 FNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITWNTL 395
           F+ +P++  ++ T++I+G+               M      A+  F +M ERN+++WN L
Sbjct: 313 FDSMPIRNVIAETSMISGYA--------------MAASTKAARLMFTKMAERNVVSWNAL 372

Query: 396 IAGY-ERSDSSESLSLFSQMGSEGYEPNCFTFTSITAACANLAVLGMLRASDISPVIKH 453
           IAGY +  ++ E+LSLF  +  E   P  ++F +I  ACA+LA L +   + +  V+KH
Sbjct: 373 IAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH-VLKH 415

[Close]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-28
Identity = 75/229 (32.75%), Postives = 123/229 (53.71%), Query Frame = 1


Query: 212 WATNLIKSYFDKGLSKHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSH 271
           W T ++ +Y  +G        FD++P+RD V+WT MIVG+ +   Y ++  V  +M++  
Sbjct: 83  WNT-VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEG 142

Query: 272 IHPNAFTLSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDA 331
           I P  FTL++VL +    + +  G   HS   K G+ G++ V N+LL+MYA C   M  A
Sbjct: 143 IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM-A 202

Query: 332 LTVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLQVFRQMCNCLCDAKRCFGEMTERNLITW 391
             VF+ + ++   SW  +IA   H   G   L + +            F +M ER+++TW
Sbjct: 203 KFVFDRMVVRDISSWNAMIA--LHMQVGQMDLAMAQ------------FEQMAERDIVTW 262

Query: 392 NTLIAGY-ERSDSSESLSLFSQMGSEG-YEPNCFTFTSITAACANLAVL 439
           N++I+G+ +R     +L +FS+M  +    P+ FT  S+ +ACANL  L
Sbjct: 263 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKL 295

[Close]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr
Match: gi|778662137|ref|XP_011659402.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 168/203 (82.76%), Postives = 182/203 (89.66%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           MS +KLASS  FHPIPLIVRNSLQWI+NST LQS PPFTP+ PS+WATNLIKSYFDKGL+
Sbjct: 1   MSVDKLASSPHFHPIPLIVRNSLQWISNST-LQSNPPFTPEGPSVWATNLIKSYFDKGLT 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
           + A NLF+E+PERDVV WTAMIVGFTSCN Y Q+W +F EMLRS + PNAFT+SSVLKAC
Sbjct: 61  REACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPNAFTMSSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGMKALSCG LAHSLATKHGID S+YVQNALLDMYA  CATMDDAL+VFNDIPLKTAVSW
Sbjct: 121 KGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSW 180

Query: 347 TTLIAGFTHRGDGYSGLQVFRQM 370
           TTLIAGFTHRGDGYSGL  FRQM
Sbjct: 181 TTLIAGFTHRGDGYSGLLAFRQM 202

[Close]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr
Match: gi|659099292|ref|XP_008450526.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis melo])

HSP 1 Score: 341.7 bits (875), Expect = 2.0e-90
Identity = 166/203 (81.77%), Postives = 179/203 (88.18%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           MS +KLASS  FHPIPLIVRNSLQWI+NST LQS PPFTPK PS WATNLIKSYFDKGL+
Sbjct: 1   MSVDKLASSPHFHPIPLIVRNSLQWISNST-LQSNPPFTPKGPSFWATNLIKSYFDKGLT 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
           + A NLF+E+PERDVV WTAMIVGFTSCN Y Q+W +F EMLRS + PNAFT+SSVLKAC
Sbjct: 61  REACNLFNEIPERDVVTWTAMIVGFTSCNHYPQAWTMFSEMLRSEVQPNAFTMSSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGMKALSCG LAHSLATK GID S+YVQNALLDMYA  CATMDDAL+VFNDIPLKTAVSW
Sbjct: 121 KGMKALSCGALAHSLATKLGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSW 180

Query: 347 TTLIAGFTHRGDGYSGLQVFRQM 370
           TTLIAG THRGDGYSGL  FR+M
Sbjct: 181 TTLIAGLTHRGDGYSGLLAFRKM 202

[Close]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr
Match: gi|1000980908|ref|XP_015570530.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Ricinus communis])

HSP 1 Score: 328.2 bits (840), Expect = 2.3e-86
Identity = 166/328 (50.61%), Postives = 215/328 (65.55%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           M++ +L S+  F+ +P ++ N  +W  N T +QS  P+ PK+PS  AT+L+KSYF+KGL 
Sbjct: 1   MNSKRLISTNSFYTLPSLITNHFRWTQN-TPIQSNKPYAPKAPSFLATDLMKSYFEKGLV 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
           + ARN+FDEM ERDVVAWT MI G+ SCN++  +W++FC+M+ S ++PNAFT+SSVLKAC
Sbjct: 61  REARNVFDEMLERDVVAWTVMIAGYASCNEHAYAWSMFCDMVASEMNPNAFTISSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGMK+LSCGTL H  A KHGI+GS++V NAL+D YATCC +M +A  VF  I +K AVSW
Sbjct: 121 KGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMDAYATCCVSMREACLVFCGIEVKNAVSW 180

Query: 347 TTLIAGFTHRGDGYSGLQVFRQM------CN----------CLCDAKRCFG--------- 406
           TTLIAG+TH+GDG+ GLQ+FRQM      CN          C       FG         
Sbjct: 181 TTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPYSFSIAVRACASIGSHNFGKQIHAAVIK 240

Query: 407 -------------------------------EMTERNLITWNTLIAGYERSDSSESLSLF 439
                                          EMT R+LITWNT+IAGYERSDS E+L +F
Sbjct: 241 HGCEFSLPVMNSILDMYCRCGRLPEANQYFHEMTRRDLITWNTIIAGYERSDSIEALFIF 300

[Close]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr
Match: gi|703086268|ref|XP_010092960.1| (hypothetical protein L484_018897 [Morus notabilis])

HSP 1 Score: 326.2 bits (835), Expect = 8.8e-86
Identity = 168/306 (54.90%), Postives = 205/306 (66.99%), Query Frame = 1


Query: 184 IVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLSKHARNLFDEMPERDVVA 243
           ++RNSLQ  N  T  QS PPF PK+PS+ ATNLIKSY +KGL K AR++FDEMP +DVVA
Sbjct: 1   MIRNSLQ--NRIT--QSNPPFLPKAPSVLATNLIKSYLEKGLVKEARSVFDEMPHKDVVA 60

Query: 244 WTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKACKGMKALSCGTLAHSLAT 303
           WTAM+ G+TSCND+  +W +FC M+RS + PNAFT SSVLKAC+GMKAL CG   H    
Sbjct: 61  WTAMVEGYTSCNDHGHAWLLFCAMVRSEVGPNAFTFSSVLKACRGMKALLCGASVHGSVV 120

Query: 304 KHG--IDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSWTTLIAGFTHRGDGYS 363
           K G  ++GS+YV+NAL+DMYATCCA+MDDA  VF D+ +K AVSWTTLI GFTHRGDGY 
Sbjct: 121 KRGVTVEGSVYVENALMDMYATCCASMDDACRVFRDMFVKNAVSWTTLITGFTHRGDGYM 180

Query: 364 GLQVFRQM------------------------------CN-------------------C 423
           GL+   ++                              C                    C
Sbjct: 181 GLREDAELNPFSFSIAVRACASISSRTFGRQIHAAVIKCGFESNLVVMNAVLDMYCRYAC 240

Query: 424 LCDAKRCFGEMTERNLITWNTLIAGYERSDSSESLSLFSQMGSEGYEPNCFTFTSITAAC 439
           L +A +CF EMTE+NLITWNTLIAGY+R DSSE L LFSQM S+G+ PNCFTF+++TA C
Sbjct: 241 LSEANQCFLEMTEKNLITWNTLIAGYQRMDSSECLHLFSQMESQGFRPNCFTFSNVTAGC 300

[Close]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr
Match: gi|802755356|ref|XP_012088861.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas])

HSP 1 Score: 320.5 bits (820), Expect = 4.8e-84
Identity = 162/328 (49.39%), Postives = 212/328 (64.63%), Query Frame = 1


Query: 167 MSANKLASSTRFHPIPLIVRNSLQWINNSTTLQSTPPFTPKSPSIWATNLIKSYFDKGLS 226
           MS+ +L ++T +HP P ++++ L W  N T ++S  P+ PK+PS  AT+LIKSYF+KGL 
Sbjct: 1   MSSRRLLTTTGYHPFPPMIKHHLSWAEN-TPIKSKTPYIPKAPSFLATDLIKSYFEKGLV 60

Query: 227 KHARNLFDEMPERDVVAWTAMIVGFTSCNDYTQSWAVFCEMLRSHIHPNAFTLSSVLKAC 286
           + ARNLFDEM ERDVVAWTAMI G+ SC+++  +W++FC M+++ ++PNAFT+SSVLKAC
Sbjct: 61  REARNLFDEMSERDVVAWTAMIAGYASCDEHVYAWSMFCNMVKNALNPNAFTISSVLKAC 120

Query: 287 KGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDIPLKTAVSW 346
           KGM+ LSCG L H  A KHG  GS+YV NAL+DMYATCC +M DA  VF+ I  K  V+W
Sbjct: 121 KGMENLSCGALVHGFAIKHGQQGSIYVDNALMDMYATCCVSMRDAWMVFHAIEEKNPVTW 180

Query: 347 TTLIAGFTHRGDGYSGL-------------------------------QVFRQM------ 406
           TT+IA +THRGDG+ GL                                  +QM      
Sbjct: 181 TTMIACYTHRGDGHCGLQIFRQMLLEEKECNPYSFSIAIRACASVGSQHYGKQMHAAAIK 240

Query: 407 -------------------CNCLCDAKRCFGEMTERNLITWNTLIAGYERSDSSESLSLF 439
                              C CL +A + F EMT+++LITWNTLI+GYE+SDS +SL +F
Sbjct: 241 HGCECSLPVMNSILDMYCRCGCLSEANQYFHEMTQKDLITWNTLISGYEKSDSIKSLFIF 300

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g02200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TVP23_ARATH	7.8e-66	82.24	Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN...	[more]
PPR83_ARATH	1.1e-56	53.92	Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis th...	[more]
PP167_ARATH	1.1e-27	32.89	Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN...	[more]
PP151_ARATH	1.4e-27	31.38	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN...	[more]
PP168_ARATH	1.2e-26	32.75	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG00g02200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW37_CUCSA	8.9e-93	82.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1	[more]
W9QSM5_9ROSA	6.2e-86	54.90	Uncharacterized protein OS=Morus notabilis GN=L484_018897 PE=4 SV=1	[more]
F6I4U5_VITVI	3.1e-77	50.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00870 PE=4 SV=...	[more]
B9RFL6_RICCO	1.1e-74	52.88	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]
A0A0A0L2G2_CUCSA	2.8e-70	92.76	Golgi apparatus membrane protein TVP23 OS=Cucumis sativus GN=Csa_4G499830 PE=3 S...	[more]

BLAST of Cp4.1LG00g02200.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09330.1	4.4e-67	82.24	unknown protein	[more]
AT1G56570.1	6.3e-58	53.92	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G21090.1	6.2e-29	32.89	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G13600.1	8.1e-29	31.38	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22070.1	6.8e-28	32.75	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Cp4.1LG00g02200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662137\|ref\|XP_011659402.1\|	1.3e-92	82.76	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]
gi\|659099292\|ref\|XP_008450526.1\|	2.0e-90	81.77	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]
gi\|1000980908\|ref\|XP_015570530.1\|	2.3e-86	50.61	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Ricin...	[more]
gi\|703086268\|ref\|XP_010092960.1\|	8.8e-86	54.90	hypothetical protein L484_018897 [Morus notabilis]	[more]
gi\|802755356\|ref\|XP_012088861.1\|	4.8e-84	49.39	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatro...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR008564	TVP23-like
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007030	Golgi organization
biological_process	GO:0009306	protein secretion
biological_process	GO:0009826	unidimensional cell growth
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005768	endosome
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005802	trans-Golgi network
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG00g02200	Cp4.1LG00g02200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG00g02200.1	Cp4.1LG00g02200.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_19g00030.1:five_prime_utr:002	Cp4.1_LG00_19g00030.1:five_prime_utr:002	five_prime_UTR
Cp4.1_LG00_19g00030.1:five_prime_utr:001	Cp4.1_LG00_19g00030.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1_LG00_19g00030.1:cds:008	Cp4.1_LG00_19g00030.1:cds:008	CDS
Cp4.1_LG00_19g00030.1:cds:007	Cp4.1_LG00_19g00030.1:cds:007	CDS
Cp4.1_LG00_19g00030.1:cds:006	Cp4.1_LG00_19g00030.1:cds:006	CDS
Cp4.1_LG00_19g00030.1:cds:005	Cp4.1_LG00_19g00030.1:cds:005	CDS
Cp4.1_LG00_19g00030.1:cds:004	Cp4.1_LG00_19g00030.1:cds:004	CDS
Cp4.1_LG00_19g00030.1:cds:003	Cp4.1_LG00_19g00030.1:cds:003	CDS
Cp4.1_LG00_19g00030.1:cds:002	Cp4.1_LG00_19g00030.1:cds:002	CDS
Cp4.1_LG00_19g00030.1:cds:001	Cp4.1_LG00_19g00030.1:cds:001	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 344..370 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 387..433 score: 4.6E-8coord: 240..286 score: 3.8
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 242..276 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 310..341 score: 5.185coord: 240..274 score: 10.095coord: 342..376 score: 7.53coord: 209..239 score: 6.182coord: 387..420 score: 8
IPR008564	Protein of unknown function DUF846, eukaryotic	PFAM	PF05832	DUF846	coord: 8..126 score: 3.6
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 157..183 score: 1.9E-138coord: 202..438 score: 1.9E
None	No IPR available	PANTHER	PTHR24015:SF909	SUBFAMILY NOT NAMED	coord: 202..438 score: 1.9E-138coord: 157..183 score: 1.9E