Cp4.1LG00g01910.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG00g01910.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaC01g26880D protein
LocationCp4.1LG00 : 5315742 .. 5316242 (+)
Sequence length345
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGGAACATGGGAATAGATCGGATACCAATACGGACTACCTATTTCAATTGTTGTGCTTTCTCAAATTGCATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGCAGATTTGCAGTGGTCTATAATTTACTGAGTACTCGGTATAACTCACGCATTCGTGTACAAACCCGTGCAGACGAAGTAACACGAATATCTCCGGTAGTCAGTCTATTTCCATCAGCCGGCCGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACAGATA

mRNA sequence

ATCGGAACATGGGAATAGATCGGATACCAATACGGACTACCTATTTCAATTGTTGTGCTTTCTCAAATTGCATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGCAGATTTGCAGTGGTCTATAATTTACTGAGTACTCGGTATAACTCACGCATTCGTGGGCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACAGATA

Coding sequence (CDS)

ATGGGAATAGATCGGATACCAATACGGACTACCTATTTCAATTGTTGTGCTTTCTCAAATTGCATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGCAGATTTGCAGTGGTCTATAATTTACTGA

Protein sequence

MGIDRIPIRTTYFNCCAFSNCIPIQGFKFRSIFAELIIPLENADLQWSIIY
Homology
[Close]
BLAST of Cp4.1LG00g01910.1 vs. TrEMBL
Match: A0A078FWT9_BRANA (BnaC01g26880D protein OS=Brassica napus GN=BnaC01g26880D PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 1  MGIDRIPIRTTYFNCCAFSNCIPIQGFKFRS 32
          MGID IPIRTTYFNCCAFSNCIPIQGFKFRS
Sbjct: 27 MGIDLIPIRTTYFNCCAFSNCIPIQGFKFRS 57

[Close]
BLAST of Cp4.1LG00g01910.1 vs. NCBI nr
Match: gi|674915612|emb|CDY17564.1| (BnaC01g26880D [Brassica napus])

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-10
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 

Query: 1  MGIDRIPIRTTYFNCCAFSNCIPIQGFKFRS 32
          MGID IPIRTTYFNCCAFSNCIPIQGFKFRS
Sbjct: 27 MGIDLIPIRTTYFNCCAFSNCIPIQGFKFRS 57

The following BLAST results are available for this feature:
BLAST of Cp4.1LG00g01910.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g01910.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A078FWT9_BRANA5.2e-1096.77BnaC01g26880D protein OS=Brassica napus GN=BnaC01g26880D PE=3 SV=1[more]
BLAST of Cp4.1LG00g01910.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG00g01910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|674915612|emb|CDY17564.1|7.5e-1096.77BnaC01g26880D [Brassica napus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG00g01910Cp4.1LG00g01910gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1_LG00_15g00020.1:five_prime_utr:001Cp4.1_LG00_15g00020.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1_LG00_15g00020.1:cds:001Cp4.1_LG00_15g00020.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1_LG00_15g00020.1:three_prime_utr:001Cp4.1_LG00_15g00020.1:three_prime_utr:001three_prime_UTR
Cp4.1_LG00_15g00020.1:three_prime_utr:002Cp4.1_LG00_15g00020.1:three_prime_utr:002three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG00g01910.1Cp4.1LG00g01910.1-proteinpolypeptide